BAC Information

Click to search

BAC

Clone NameB6Ng01-184J02
Chromosome12 (Build37)
Map Location 50,813,096 - 50,814,211
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Downstream geneLOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184J02.bB6Ng01-184J02.g
ACCGA009911GA009912
length1,124901
definitionB6Ng01-184J02.b B6Ng01-184J02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccccttactcaaagatggaaggtcattaacagggcacttggg
cagacaggaattacagttagtggagacactgaacattctaaatggtctaa
cgcaacattgaagggcttcttaaattcaaaaacttttgctgagcaccact
accacgggttttcactgtctctggtaacactgcttcatacagttccgtgt
aagaaagcaatacagattttaatcactgtgtttatgttttctgcttaata
gtatccatgtgtcatgctataaacataaataatttttagagaattatgca
tgttttcatattaaaactaacagggaattgtgtgggtagtaatgacagtg
gtgcagctaatactaagtttgttttgagattctgtattattttttactat
ttcatatatgtccaaattccactttgatgcaatagactaacaagcataag
gatctctacttgttttcttcccctcccaatcagtgatcaaagttatatta
ggccaaacaaatctcaatatatgcaatgtatcaatacaattttaaaataa
atattcatagcagacacaccaagtaattagtaatagcacctgaatttcag
ttaggcattgtcatttaccaaaagtgaaattaaagtcacttgattattct
tgctttctacatctgataagcaagtgtttttaactaggttcagttctcaa
gctcttacaatttctgaagtcatcttttcatttaaatttacaaattttag
ttactaataaacatttgaagtaaaaataaaaacattgttcagtggaaagc
tatggaataatagcatggcagatgccaaggaaaggatatttagttctata
aaacatttagaggagctggaaagataaatggtgacagacatgctggtaat
tagttcagtgctacaagatgcttcaaagtctagactttcagacatagaaa
ctgtgaagtagtaaataggacagcggtagtagaggcgtagacatctctct
aagatctggtttagaggggaaaacagaatgaagtggccaattaagtaatc
agttgcttgtcagattatttatttttttctttcaaggaagaaaagaacta
gggccaaggtcaaagggtaaatac

gaattctctgtttagctctgttccccatttttaatagggttatttggttc
tttgcattctaacttcttgagttctttgaatatatttaatattagcctgc
tatctggaccctcatatagcaatctcatgtgaggctatgccagtgcctgg
caaatacagaagtggatgctcacagtcatctattggatgaaacacaatat
ccctaatgaaggagctagagaaagtacgcaaggagctgaagggatctgca
gccctataggaggagcttctccttttcttctagacagaataaattttggg
ttgaaggttttgtgggtaggttggtgtccctatcactccactggggcttc
tgcctggctacaaaagatggcctcttcaggttccatatccccaatgctgt
gtcataggtaaggtcacccccactaattcttgggtgcctcccttttgcta
ggcactgtcacatccttgagatgcccctacaacctttccactcccatcaa
atgcagttttccattcattttcatgacaatctcttcatatctcttaagaa
aactgggaatcgttctacttgaagatccagctataccactcctgggcata
tacacaaaaagatgctccattccacaaagacacttgctcaaactatgttc
atagcaactttattcataatatccagaacctggaaacaacataaagtgtt
tcctcaactgaagaatggataaagaaaatgtggtgcatctacagattgga
atactattcaactttttataaacaaagaaatcatgaattttacaggcaaa
tggatcgaacttgagattatcatccttgagggatcttaacagtccccaaa
aaggtcatacacagtatgtactcataagtggacattaacccaggccatag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50813096_50814211
seq2: B6Ng01-184J02.b_44_1167

seq1  GAATTCCTCCCCTTACTCAAAGATGGAAGGTCATTAACAGGGCACTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCCTTACTCAAAGATGGAAGGTCATTAACAGGGCACTTGGG  50

seq1  CAGACAGGAATTACAGTTAGTGGAGACACTGAACATTCTAAATGGTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAATTACAGTTAGTGGAGACACTGAACATTCTAAATGGTCTAA  100

seq1  CGCAACATTGAAGGGCTTCTTAAATTCAAAAACTTTTGCTGAGCACCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACATTGAAGGGCTTCTTAAATTCAAAAACTTTTGCTGAGCACCACT  150

seq1  ACCACGGGTTTTCACTGTCTCTGGTAACACTGCTTCATACAGTTCCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGGTTTTCACTGTCTCTGGTAACACTGCTTCATACAGTTCCGTGT  200

seq1  AAGAAAGCAATACAGATTTTAATCACTGTGTTTATGTTTTCTGCTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAATACAGATTTTAATCACTGTGTTTATGTTTTCTGCTTAATA  250

seq1  GTATCCATGTGTCATGCTATAAACATAAATAATTTTTAGAGAATTATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATGTGTCATGCTATAAACATAAATAATTTTTAGAGAATTATGCA  300

seq1  TGTTTTCATATTAAAACTAACAGGGAATTGTGTGGGTAGTAATGACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATATTAAAACTAACAGGGAATTGTGTGGGTAGTAATGACAGTG  350

seq1  GTGCAGCTAATACTAAGTTTGTTTTGAGATTCTGTATTATTTTTTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCTAATACTAAGTTTGTTTTGAGATTCTGTATTATTTTTTACTAT  400

seq1  TTCATATATGTCCAAATTCCACTTTGATGCAATAGACTAACAAGCATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATGTCCAAATTCCACTTTGATGCAATAGACTAACAAGCATAAG  450

seq1  GATCTCTACTTGTTTTCTTCCCCTCCCAATCAGTGATCAAAGTTATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTACTTGTTTTCTTCCCCTCCCAATCAGTGATCAAAGTTATATTA  500

seq1  GGCCAAACAAATCTCAATATATGCAATGTATCAATACAATTTTAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACAAATCTCAATATATGCAATGTATCAATACAATTTTAAAATAA  550

seq1  ATATTCATAGCAGACACACCAAGTAATTAGTAATAGCACCTGAATTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATAGCAGACACACCAAGTAATTAGTAATAGCACCTGAATTTCAG  600

seq1  TTAGGCATTGTCATTTACCAAAAGTGAAATTAAAGTCACTTGATTATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATTGTCATTTACCAAAAGTGAAATTAAAGTCACTTGATTATTCT  650

seq1  TGCTTTCTACATCTGATAAGCAAGTGTTTTTAACTAGGTTCAGTTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTACATCTGATAAGCAAGTGTTTTTAACTAGGTTCAGTTCTCAA  700

seq1  GCTCTTACAATTTCTGAAGTCATCTTTTCATTTAAATTTACAAATTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACAATTTCTGAAGTCATCTTTTCATTTAAATTTACAAATTTTAG  750

seq1  TTACTAATAAACATTTGAAGTAAAAATAAAAACATTGTTCAGTGGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATAAACATTTGAAGTAAAAATAAAAACATTGTTCAGTGGAAAGC  800

seq1  TATGGAATAATAGCATGGCAGATGCCAAGGAAAGGATATTTAGTTCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATAATAGCATGGCAGATGCCAAGGAAAGGATATTTAGTTCTATA  850

seq1  AAACATTTAGAGGAGCTGGAAAGATAAATGGTGACAGACATGCTGGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAGAGGAGCTGGAAAGATAAATGGTGACAGACATGCTGGTAAT  900

seq1  TAGTTCAGTGCTACAAGATGCTTCAAAGTCTAGACTTTCAGACATAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGTGCTACAAGATGCTTCAAAGTCTAGACTTTCAGACATAGAAA  950

seq1  CTGTGAAGTAGTAAATAGGACAGCGGTAGTAGAGGCGTAGACATCTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGTAGTAAATAGGACAGCGGTAGTAGAGGCGTAGACATCTCTCT  1000

seq1  AAGATCTGGTTTAGAGGGG-AAACAGGAAATGAAGTGG-CAATTAAGTAA  1048
      ||||||||||||||||||| ||||||  |||||||||| |||||||||||
seq2  AAGATCTGGTTTAGAGGGGAAAACAG--AATGAAGTGGCCAATTAAGTAA  1048

seq1  TCAGTTGC-TGTCAAGATTAT---TATTTTTCTTTCAA-GAAGACA--GA  1091
      |||||||| |||| |||||||   | |||||||||||| ||||| |   |
seq2  TCAGTTGCTTGTC-AGATTATTTATTTTTTTCTTTCAAGGAAGAAAAGAA  1097

seq1  CTAGGG-CAAGGTCAAA-GGTAAATAC  1116
      |||||| |||||||||| |||||||||
seq2  CTAGGGCCAAGGTCAAAGGGTAAATAC  1124


| Home | SequenceCutter | Blast | Download |