BAC Information

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BAC

Clone NameB6Ng01-184K07
Chromosome12 (Build37)
Map Location 56,899,013 - 56,900,140
singlet/doubletsinglet
Overlap geneGarnl1
Upstream geneCfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184K07.bB6Ng01-184K07.g
ACCGA009967GA009968
length1,2781,117
definitionB6Ng01-184K07.b B6Ng01-184K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttttttttcttttaatcaaagccccaagtccaagtaaggggca
ggtggttattcccataactgcactaatgggcacagttcacctggcaggta
ggtactgtagtttgtagagtttatagctgcattaaatgctggattcctgt
atcctttaatcgtctgaattacaccatccaacaccatgaaagccagccag
tagtgggaatctttcagcccagttcaagcttgatttctctacaccttgca
tccaaagtgtaaaatgtgcactgtctatagcagtgatgtcttttatcagc
tagttctggtaggtaatcgataggcaagagcctgtgtggttttgagggcc
tccacgacaaacaactcctacagagttatctcatacttagcactgcagtt
tctgtttataacctggggtctgcattgtctagtctcacagggttgatgcc
ttcaaactcctttttatgttttttattggatctaccaagtgatttttctc
caacctcctttgttttataccctttcccttgggtctctcacccttccctt
ctctcccaacttgaacatttccaccctccactatatcccttcaacatcta
tttaacctatgtgtcactcactgtgtcttctgccttaagacaaccaccca
cctctcttccctttttagcagcttgggttcccaaaattctccaatggaaa
ctcacaaaactaaagagccaaggctgacacacataataagagaaaacata
tgggccattttctttctgggcactggttacctagctcaatagaatctttt
ccagatccatccattttcctgcaaagttcaaatttttatttttctttatg
gctgcataaaattccactgtgcacatgcaccacagtgccagaactcactc
cccagtgatggatatcatcaggctgttctttttcatctctattaggaata
gagcagaaaggactggtgtagagctctgtgacagagttctgtctagtgag
tgcaaggctcctggatttgattcccagcactattagcaggagaggaaagg
taatgaggaaggaggagggcggaaattaaaaggaggaggacaaacttttc
cgagcaaggcaaattccatccattcccaagagagggccatttatttttta
ctcctctgggattagggaggaaagaagaaggtcagaggcaaggaacttac
gtaaattattgattaatttgttgtgttccaaaacccacagtggccaagtg
tgtttatcatagagatgacggacactta
gaattcagtaagaaactctctggaataattcaagagaaaggaaaccgaaa
ggggagccgagttatagaggctacagagacactccatcaactctgagcca
cgataccaggcttcaccctttccaaatgccccactaactttcctgctcct
cgtttaaaggctcactactttagcacacatgccacagtggccagtgccaa
acttgctgcagcaaacctttaccactttcatctagcagaagtgttctgca
gggtgataaatgtatccacccacacaccaaaaaaaaaaaaaaaaaaaagg
taatcaaaatattacctgtcttcacagacacttctgtttggaagtgcttg
tgagctagtattttcctaaagagacaaaatacacatttcacctgagatcc
aggctcaggtttatgaattttaaaaatgattcaggctttgtagacctttg
ggaatattaaattagcaaggtaattctaggctttagtttccatcagttag
atttctcaaatgtttcctttgggctttaagaaaaatggattattttttaa
gaacctgattatatttactctctttcatacatttttgaaatatttaaata
ctatagcatgtatgtaaacaaaaaatttaaaggtcaaaagtcaactttca
gccgggcgtggtggcgcacacctttaatcccagcacttgggaggcagagg
caggcagatttctgagttcgagaccagcctggtctacaaagtgagttcca
ggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaa
aaaaaagtcagctttccttttaaagccccgggtattaaatgtgtctctgg
aaatgtactaattaatgaggttgagaaacccagctgcggatacaactcag
ttggtaagtgattgtctggcgtcacacactggaagataggcagctcaagg
acttcctttacttgtacagagagcttaaggccagtgtgccacacattagt
catgccttttaaaaatttaggatacaaagtattcctaaaacacacagcat
ctaactattaaatgatcaccacccaaatctcatgaatgtggagttctagt
cagaaagagtccacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56899013_56900140
seq2: B6Ng01-184K07.g_63_1179

seq1  GAATTCAGTAAGAAACTCTCTGGAATAATTCAAGAGAAAGGAAACCGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGAAACTCTCTGGAATAATTCAAGAGAAAGGAAACCGAAA  50

seq1  GGGGAGCCGAGTTATAGAGGCTACAGAGACACTCCATCAACTCTGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCGAGTTATAGAGGCTACAGAGACACTCCATCAACTCTGAGCCA  100

seq1  CGATACCAGGCTTCACCCTTTCCAAATGCCCCACTAACTTTCCTGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACCAGGCTTCACCCTTTCCAAATGCCCCACTAACTTTCCTGCTCCT  150

seq1  CGTTTAAAGGCTCACTACTTTAGCACACATGCCACAGTGGCCAGTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAAAGGCTCACTACTTTAGCACACATGCCACAGTGGCCAGTGCCAA  200

seq1  ACTTGCTGCAGCAAACCTTTACCACTTTCATCTAGCAGAAGTGTTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGCAGCAAACCTTTACCACTTTCATCTAGCAGAAGTGTTCTGCA  250

seq1  GGGTGATAAATGTATCCACCCACACACCAAAAAAAAAAAAAAAAAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATAAATGTATCCACCCACACACCAAAAAAAAAAAAAAAAAAAAGG  300

seq1  TAATCAAAATATTACCTGTCTTCACAGACACTTCTGTTTGGAAGTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAATATTACCTGTCTTCACAGACACTTCTGTTTGGAAGTGCTTG  350

seq1  TGAGCTAGTATTTTCCTAAAGAGACAAAATACACATTTCACCTGAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGTATTTTCCTAAAGAGACAAAATACACATTTCACCTGAGATCC  400

seq1  AGGCTCAGGTTTATGAATTTTAAAAATGATTCAGGCTTTGTAGACCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGGTTTATGAATTTTAAAAATGATTCAGGCTTTGTAGACCTTTG  450

seq1  GGAATATTAAATTAGCAAGGTAATTCTAGGCTTTAGTTTCCATCAGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTAAATTAGCAAGGTAATTCTAGGCTTTAGTTTCCATCAGTTAG  500

seq1  ATTTCTCAGATGTTTCCTTTGGGCTTTAAGAAAAATGGATTATTTTTTAA  550
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAATGTTTCCTTTGGGCTTTAAGAAAAATGGATTATTTTTTAA  550

seq1  GAACCTGATTATATTTACTCTCTTTCATACATTTTTGAAATATTTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGATTATATTTACTCTCTTTCATACATTTTTGAAATATTTAAATA  600

seq1  CTATAGCATGTATGTAAACAAAAAATTTAAAGGTCAAAAGTCAACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATGTATGTAAACAAAAAATTTAAAGGTCAAAAGTCAACTTTCA  650

seq1  GCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGG  700

seq1  CAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAGTGAGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAGTGAGTTCCA  750

seq1  GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC-AAAAAAA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAA  800

seq1  AAAAAAGTCAGCTTTCCTTTTAAAGCCCC-GGTATTAAATGTGTCTCTGG  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAGTCAGCTTTCCTTTTAAAGCCCCGGGTATTAAATGTGTCTCTGG  850

seq1  AAATGTACTAAATTAATGAGGTTGAGAAACCCAGCTGCGGATACAACTCA  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACT-AATTAATGAGGTTGAGAAACCCAGCTGCGGATACAACTCA  899

seq1  GTTGGTAAAGTGATTGTCTGGCGTCACACAACTGGAAGATAAGCAGCTCA  948
      |||||| |||||||||||||||||||||| ||||||||||| ||||||||
seq2  GTTGGT-AAGTGATTGTCTGGCGTCACAC-ACTGGAAGATAGGCAGCTCA  947

seq1  AGGACTTCCTTTAC-TGTACAGAGAGCTTAAGGCCAGTGTGCCACACATT  997
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCTTTACTTGTACAGAGAGCTTAAGGCCAGTGTGCCACACATT  997

seq1  AGTCATGCCTTTAAAAAAATTTAGGAATACAAAGTATTTCCTAAAACACA  1047
      ||||||||||||  ||||||||||| |||||||||| |||||||||||||
seq2  AGTCATGCCTTT-TAAAAATTTAGG-ATACAAAGTA-TTCCTAAAACACA  1044

seq1  CAACAATCTAAAACTATTAAAATGATCACACACACAAAATCTCATGGATG  1097
      || | ||||  ||||||| |||||||||| ||| | |||||||||| |||
seq2  CAGC-ATCT--AACTATT-AAATGATCAC-CAC-CCAAATCTCATGAATG  1088

seq1  TTGGAGTTCTTAGTCCAGAAAGAGTCC-CACA  1128
       |||||||| |||| |||||||||||| ||||
seq2  -TGGAGTTC-TAGT-CAGAAAGAGTCCACACA  1117