BAC Information

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BAC

Clone NameB6Ng01-184M18
Chromosome12 (Build37)
Map Location 58,191,981 - 58,345,931
singlet/doubletdoublet
Overlap geneSlc25a21, AU021838
Upstream geneLOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184M18.bB6Ng01-184M18.g
ACCGA010081GA010082
length1,1921,114
definitionB6Ng01-184M18.b B6Ng01-184M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,191,981 - 58,193,175)(58,345,183 - 58,345,931)
sequence
gaattccaagcaccctgctgtgcctggaccacagcactgggttacaagca
catttgaccatgtagatgttgggggttcgaccctgcgtactcatgtttgc
acagcaatcactctttcccacagagccgagttaccagcccatctgtgaac
ttagagaagtgtgtgtttacacagtcattacataaaccaagaaatgtgtg
aatttttataacaattcatgctttcattttcttttctttgtatttcctcc
aacatgctagagcctagcatctgtaacacctagtcagatctttttcacaa
tatattaaactcctcatgaggcttctccatttgtttaaccatgaaaaatc
caacacggaagatgtcagcactgacagcatcactccatcaaccaaactct
gttcatataattcattattttaggaaaacttgggaactagcatccagtga
cttggactctggggtaatcccattttatccacacattgagtcacagacac
aactcaagtgttcctgcttctgtctatcaatatacgtgcaccctcaaaca
cacctatctgctgtcttcaccttcttaacaagatgattcctcctcttact
tcctccattgcctcttagtgcatttggtatgcaaatacctgttagctctc
cacttcctctttaacacagccctcatttcacagctctctccttatatcct
acaatcaccctaagggcagaaggtggtattttatattccattttatctat
agcagcaaaattaaaatctagcacatagtaaacatgtgagcaaataaagc
caataaatcaaagaaaggtcaagcaaagactggaggtgactttttccatt
tgctatgggatatcctttaatccataatgtgttgatgtttctcttttaaa
gtagtattataactttagtttctcaatatataaaaaggaaaactattatg
catgggaagaaatgccttataattttagcacttacggagatgaaattggg
agctaaaggttcttataggctagcctgggctacacagtaacttgttagac
acctggttgcatagttctgcctggaacaagaaaccaaactacataattta
cttcttattatttattaacaaacatatttcttctgatgaaccatagccag
aaatgtagttgagcctaagtatacttatctacgagtagaaat
gaattccttactagccggaatgaaaaagtgagacactctctcagaaaatt
aattaatacaccacaaagattaatattattatgaagacagcgatgaacta
agataaggaaacagtcaaagagaacagtcacaaacaaaacaatataaaga
atgataaaaacattaacatattcatgataatgtatttgaaattttccatg
taatagataaacctttaggaaaataatatacaaaaaagtcactcagtaat
taagtaaatcttaaaataattgtgtatccttcaaagaaattaatcagaaa
tagaaaatagccctgggaagaagcatattataaaactgattcaaccttat
ttggaattatttccactttacctaaaaataatttatgctttgtttaaaga
tttcattttagggctggtgagatggctcagcaggtaagcacactgactgc
tcttctgaaggtcttcagttcaaatcccagcaaccacatggtggctcaaa
accaacataatgagatatgatgccctcttctggtgcatctgaagacagct
acaatgcacttaattataataataaataaaactctgggctggagcaagca
agcagggttgatgggagtgagcagaggtcctaaaaattcaattcccaaca
accacatgaaggctcacaaccatccgctcaactacagtacgtacgtacgt
acgtacatacatatatatataatctttagagctgggcatggtggtgcacg
cctttaatcccagcacttgggaggcagaggcgggcggatttctgagttcg
aggccatcctggtctacagagtgagttctaggacagccaaggctacacag
agaaaccctgtcttaaaaaaagaaaaattacctttccatttgagcgggaa
attcattaagacacaatgttaaaggggaagtgaaactacaagatgttcta
aaggaatgtgtaacagactattgtaaaggccacccacatggtagctcatt
aggctcaaaacatacaccaattggttcagaggctcctgggattcacagac
tcactaggctctcttctcagcacagtaaagtagaataagagtcacttctc
agacagcctgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58191981_58193175
seq2: B6Ng01-184M18.b_44_1235

seq1  GAATTCCAAGCACCCTGCTGTGCCTGGACCACAGCACTGGGTTACAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCACCCTGCTGTGCCTGGACCACAGCACTGGGTTACAAGCA  50

seq1  CATTTGACCATGTAGATGTTGGGGGTTCGACCCTGCGTACTCATGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACCATGTAGATGTTGGGGGTTCGACCCTGCGTACTCATGTTTGC  100

seq1  ACAGCAATCACTCTTTCCCACAGAGCCGAGTTACCAGCCCATCTGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCACTCTTTCCCACAGAGCCGAGTTACCAGCCCATCTGTGAAC  150

seq1  TTAGAGAAGTGTGTGTTTACACAGTCATTACATAAACCAAGAAATGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGTGTGTGTTTACACAGTCATTACATAAACCAAGAAATGTGTG  200

seq1  AATTTTTATAACAATTCATGCTTTCATTTTCTTTTCTTTGTATTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATAACAATTCATGCTTTCATTTTCTTTTCTTTGTATTTCCTCC  250

seq1  AACATGCTAGAGCCTAGCATCTGTAACACCTAGTCAGATCTTTTTCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTAGAGCCTAGCATCTGTAACACCTAGTCAGATCTTTTTCACAA  300

seq1  TATATTAAACTCCTCATGAGGCTTCTCCATTTGTTTAACCATGAAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAACTCCTCATGAGGCTTCTCCATTTGTTTAACCATGAAAAATC  350

seq1  CAACACGGAAGATGTCAGCACTGACAGCATCACTCCATCAACCAAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGGAAGATGTCAGCACTGACAGCATCACTCCATCAACCAAACTCT  400

seq1  GTTCATATAATTCATTATTTTAGGAAAACTTGGGAACTAGCATCCAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATAATTCATTATTTTAGGAAAACTTGGGAACTAGCATCCAGTGA  450

seq1  CTTGGACTCTGGGGTAATCCCATTTTATCCACACATTGAGTCACAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCTGGGGTAATCCCATTTTATCCACACATTGAGTCACAGACAC  500

seq1  AACTCAAGTGTTCCTGCTTCTGTCTATCAATATACGTGCACCCTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGTGTTCCTGCTTCTGTCTATCAATATACGTGCACCCTCAAACA  550

seq1  CACCTATCTGCTGTCTTCACCTTCTTAACAAGATGATTCCTCCTCTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCTGCTGTCTTCACCTTCTTAACAAGATGATTCCTCCTCTTACT  600

seq1  TCCTCCATTGCCTCTTAGTGCATTTGGTATGCAAATACCTGTTAGCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGCCTCTTAGTGCATTTGGTATGCAAATACCTGTTAGCTCTC  650

seq1  CACTTCCTCTTTAACACAGCCCTCATTTCACAGCTCTCTCCTTATATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCTTTAACACAGCCCTCATTTCACAGCTCTCTCCTTATATCCT  700

seq1  ACAATCACCCTAAGGGCAGAAGGTGGTATTTTATATTCCATTTTATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACCCTAAGGGCAGAAGGTGGTATTTTATATTCCATTTTATCTAT  750

seq1  AGCAGCAAAATTAAAATCTAGCACATAGTAAACATGTGAGCAAATAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAATTAAAATCTAGCACATAGTAAACATGTGAGCAAATAAAGC  800

seq1  CAATAAATCAAAGAAAGGTCAAGCAAAGACTGGAGGTGAC-TTTTCCATT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATAAATCAAAGAAAGGTCAAGCAAAGACTGGAGGTGACTTTTTCCATT  850

seq1  TGCTATGGGATATCCTTTAATCCATAATGTGTTGATGTTTCTCTTTTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGGATATCCTTTAATCCATAATGTGTTGATGTTTCTCTTTTAAA  900

seq1  GTAGTATTATAACTTTAGTTTCTCAATATATAAAAAGGAAAACTATTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATTATAACTTTAGTTTCTCAATATATAAAAAGGAAAACTATTATG  950

seq1  CATGGAAGAAAATGCC-TATAATTTTAGCACTTACGGAGATGAAATTGGG  998
      ||||| |  ||||||| |||||||||||||||||||||||||||||||||
seq2  CATGGGAAGAAATGCCTTATAATTTTAGCACTTACGGAGATGAAATTGGG  1000

seq1  AGCTAAAGGTTC-TATAGGCTAGCCTGGGCTACACAGTAACTTG-TAGAC  1046
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  AGCTAAAGGTTCTTATAGGCTAGCCTGGGCTACACAGTAACTTGTTAGAC  1050

seq1  AAACCTGGGTTGCATAG-TCTGCCTGGAACAAGAAAACAAAACTACAT-A  1094
        |||| |||||||||| ||||||||||||||| |||| ||||||||| |
seq2  --ACCT-GGTTGCATAGTTCTGCCTGGAACAAG-AAACCAAACTACATAA  1096

seq1  TTTACTTC-TATTATTTAATTACAAACATATTTCTTCTGATGAAAACCAA  1143
      |||||||| ||||||||| | |||||||||||||||||||||||   | |
seq2  TTTACTTCTTATTATTTATTAACAAACATATTTCTTCTGATGAA---CCA  1143

seq1  TAG-CAGAAATGTTAGTTTTGAGCTAAAAGTATACTTATCTACGAGTAGA  1192
      ||| |||||||| |||  ||||||   |||||||||||||||||||||||
seq2  TAGCCAGAAATG-TAG--TTGAGC-CTAAGTATACTTATCTACGAGTAGA  1189

seq1  AAT  1195
      |||
seq2  AAT  1192

seq1: chr12_58345183_58345931
seq2: B6Ng01-184M18.g_444_1181 (reverse)

seq1  AGCTCAGCTTGTCTGAGAGTTGACTCTTATCTTACTTTTACTGTGCTTGG  50
      |||||||  |||||||||  ||||||||||  ||| |||||||||||  |
seq2  AGCTCAGGCTGTCTGAGAAGTGACTCTTATTCTAC-TTTACTGTGCT--G  47

seq1  AGAAGGAGGAGCCTAGTGAGTCTGGTGAATCCCAGGAGCCTCCTGAACCA  100
      |||||   ||||||||||||||| ||||||||||||||||| ||||||||
seq2  AGAAG--AGAGCCTAGTGAGTCT-GTGAATCCCAGGAGCCT-CTGAACCA  93

seq1  ATTGGTTGTTAATGTTTTTGAGCCTAATGAGCTTCCATGTGGGTTGGCCT  150
      ||||| |||  ||| |||||||||||||||||| ||||||||| ||||||
seq2  ATTGG-TGT--ATG-TTTTGAGCCTAATGAGCTACCATGTGGG-TGGCCT  138

seq1  TTAACATAGTCTGTTACACATTCCCTTAGAACATCTTGTAGTTTCACTT-  199
      |||  ||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TTACAATAGTCTGTTACACATTCCTTTAGAACATCTTGTAGTTTCACTTC  188

seq1  CCCTTTAACATTGTGTCTTAATGAATTTCCCGCTCAAATGGAAAGGTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAACATTGTGTCTTAATGAATTTCCCGCTCAAATGGAAAGGTAAT  238

seq1  TTTTCTTTTTTTAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGA  288

seq1  ACTCACTCTGTAGACCAGGATGGCCTCGAACTCAGAAATCCGCCCGCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGATGGCCTCGAACTCAGAAATCCGCCCGCCTC  338

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATGCCCAGCTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATGCCCAGCTCTA  388

seq1  AAGATTATATATATATGTATGTACGTACGTACGTACGTACTGTAGTTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATATATATATGTATGTACGTACGTACGTACGTACTGTAGTTGAG  438

seq1  CGGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGAC  488

seq1  CTCTGCTCACTCCCATCAACCCTGCTTGCTTGCTCCAGCCCAGAGTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCACTCCCATCAACCCTGCTTGCTTGCTCCAGCCCAGAGTTTTA  538

seq1  TTTATTATTATAATTAAGTGCATTGTAGCTGTCTTCAGATGCACCAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTATAATTAAGTGCATTGTAGCTGTCTTCAGATGCACCAGAAG  588

seq1  AGGGCATCATATCTCATTATGTTGGTTTTGAGCCACCATGTGGTTGCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCATATCTCATTATGTTGGTTTTGAGCCACCATGTGGTTGCTGG  638

seq1  GATTTGAACTGAAGACCTTCAGAAGAGCAGTCAGTGTGCTTACCTGCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACTGAAGACCTTCAGAAGAGCAGTCAGTGTGCTTACCTGCTGA  688

seq1  GCCATCTCACCAGCCCTAAAATGAAATCTTTAAACAAAGCATAAATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCACCAGCCCTAAAATGAAATCTTTAAACAAAGCATAAATTATT  738