BAC Information

Click to search

BAC

Clone NameB6Ng01-186C22
Chromosome12 (Build37)
Map Location 62,087,164 - 62,276,474
singlet/doubletdoublet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186C22.bB6Ng01-186C22.g
ACCGA011095GA011096
length1,1911,132
definitionB6Ng01-186C22.b B6Ng01-186C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,275,269 - 62,276,474)(62,087,164 - 62,088,296)
sequence
gaattcctgtctagttgtttgtgcataacaccatattctaatgattccag
atcatttattgtgcatggacttagaacaaaacatcataccactctcttgg
gagagatgctttgaaaacaacaaactatggagagtaatttcattaaaaac
agaactctaggtatatgaacagatttattttatagtaatcaattacaata
ttgtaacagttctgtacacatttatatatctatgaatacacatagtgata
ttggtcttttaaagaacttctcatgagttaacagctactggaaagatatc
atttattcagtgaccatttttgtttgagagattatttcattgacaataat
atttctactagtttagagtactaataaaactgccctgatttgtatttcat
tattgttaccatttaagccaaaattctgactggaagtgatgttcaattac
tttcccagtctcattattcactcagcaagcacttaatttccacatgcatt
tttctataccccagatggtttgatatgcttcaataacaataatgaataag
ctgaacttagattcttttgataatacatagtgaacaggttgtaacagaag
attgtagcagaattagacagggtttttctagtacccaacaaaaagaaacc
cattcgattttaagagaaggaatttgttttggcactagctatatatgttg
ctgttatttgggttggaaaatactgcttttagaccaactactcctgtagc
cttctcagtttatgttttgaaagccaacatccttttttttttccaatagt
aggtagaatcatttagtctatacatggcctaccaaaacattatgtattca
ggtaattctggccagttcagtcatatatgctgagaagacactatttggat
aatatttacatctgggaagaaagtaaagaaaatatctttacttttagaac
agaaactaaagaaatataatgctacacttcttgcaatgttgatatagaca
tcatagatacaatcacacgaaaaaatgtgaagaatgttaaacagagacat
gtctgtaatgctactgaaaaagaaagtctctgtgccttagcctgatttaa
gcatgtatttattataaacagtgtgaaggttatttcattaggagagtgga
ttgcagtctgtccttaactgcaatggaatatatccagagag

gaattcagagtatcccagctagataagagaaatgaaattactgaatatcc
tcaaataaataaaatagctttgtggctggtgtatttatatagatctaaca
gtaataatgaatcaatacaaagacacccaagcatgatcaaacagaaaata
aatgacatgatataattttaatattagtagatggcataagtctttaggag
ttgtactgaccatatatgaggaagtaagggctaactgttctggagtttga
gataacccctttctttaaacaataggataacacttgtttactattcaata
tattaaagaaaatatcttcttcctctagttggttataaggcatgaaatca
tccctaagtacaatatgtgtaatgcacactcactatagacatgccaggtt
ggacttttccatttgacatccctgggacttggtaggaaagctagttgatg
atgtagaattcagctttctcttctgacatgagaaagtaatctcttcatct
tattgaagagttctatgatcttctactagcatccagagaactgtagcaag
ctaattgtttacctagcatatatggcaaattctaggaatttccacagttc
tgatatgaagtctccactttgaagcagcaatgactatggcctatttttaa
tttaaaactctaattctgggaatatgataggtcacaagacacctaacaaa
agtatcagacagctaacagtccatgaaaggctcctgattgagacagtgct
atgaagtatgggggaaacatcttatttctgatttaaaaatagcttaaata
agttttacatgataaatacaattatatagaatttcaaatcattagacata
gaaaaatctcaaatgagaaaacatcagaaccctaaaataaaaaggagttt
ataatataaatagcaatttgaagaaaaaatgataaaaaaatcaatataaa
ggtcaatattcaagtttttcaacattgtgggccaataaagttacaggatt
catgcatataacttatgaattatccacaattcatacaccacatacacacc
acagaatacccacaacacacacccagtggatattactttagctatgtttc
aggaaaaaattaaatacggttattttcctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62275269_62276474
seq2: B6Ng01-186C22.b_46_1236 (reverse)

seq1  CTCT-TGGATA---TCCA-TGCAGTTTAAAGACAGACTGCAAAATCAAAC  45
      |||| ||||||   |||| ||||| |||| ||||||||||  ||||  ||
seq2  CTCTCTGGATATATTCCATTGCAG-TTAAGGACAGACTGC--AATC-CAC  46

seq1  TTCTCTAGTGAAAATAAAACTTTCACACTG-TTATAATAAAATACATGCT  94
      |   ||| ||||   | ||| ||||||||| ||||||| |||||||||||
seq2  TCTCCTAATGAA---ATAACCTTCACACTGTTTATAAT-AAATACATGCT  92

seq1  TAAAATCAGCCTAAAGCACAGGAGACTCTCTTTTTCAGTAGCATTTACAG  144
      | ||||||| |||| ||||| |||||| ||||||||||||||| ||||| 
seq2  T-AAATCAGGCTAAGGCACA-GAGACTTTCTTTTTCAGTAGCA-TTACA-  138

seq1  GACATGGTCTCTGTTTAACATTTCTTCACATTTTTTTCCGTGTTGATTGT  194
      ||||| |||||||||||||| |||||||||||||||  |||| |||||| 
seq2  GACAT-GTCTCTGTTTAACA-TTCTTCACATTTTTT--CGTG-TGATTG-  182

seq1  TATCTATTGATGTCTTATTATCAACATTTGCAAGAAGTGTAGCATTAATA  244
      |||||| ||||||||   |||||||| ||||||||||||||||||| |||
seq2  TATCTA-TGATGTCT--ATATCAACA-TTGCAAGAAGTGTAGCATT-ATA  227

seq1  TTTCCTTAGTTTCTGTTCTAAAAGTAAAGATATTTTCTTTACTTTCTT-C  293
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCTTTAGTTTCTGTTCTAAAAGTAAAGATATTTTCTTTACTTTCTTCC  277

seq1  CAGATGTAAATATTATCCAAATAGTGTCTTCTCAGCATATATGACTGAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAAATATTATCCAAATAGTGTCTTCTCAGCATATATGACTGAAC  327

seq1  TGGCCAGAATTACCTGAATACATAATGTTTTGGTAGGCCATGTATAGACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAATTACCTGAATACATAATGTTTTGGTAGGCCATGTATAGACT  377

seq1  AAATGATTCTACCTACTATTGG-AAAAAAAAAGGATGTTGGCTTTCAAAA  442
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGATTCTACCTACTATTGGAAAAAAAAAAGGATGTTGGCTTTCAAAA  427

seq1  CATAAACTGAGAAGGCTACAGGAGTAGTTGGTCTAAAAGCAGTATTTTCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTGAGAAGGCTACAGGAGTAGTTGGTCTAAAAGCAGTATTTTCC  477

seq1  AACCCAAATAACAGCAACATATATAGCTAGTGCCAAAACAAATTCCTTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAATAACAGCAACATATATAGCTAGTGCCAAAACAAATTCCTTCT  527

seq1  CTTAAAATCGAATGGGTTTCTTTTTGTTGGGTACTAGAAAAACCCTGTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCGAATGGGTTTCTTTTTGTTGGGTACTAGAAAAACCCTGTCT  577

seq1  AATTCTGCTACAATCTTCTGTTACAACCTGTTCACTATGTATTATCAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCTACAATCTTCTGTTACAACCTGTTCACTATGTATTATCAAAA  627

seq1  GAATCTAAGTTCAGCTTATTCATTATTGTTATTGAAGCATATCAAACCAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAGTTCAGCTTATTCATTATTGTTATTGAAGCATATCAAACCAT  677

seq1  CTGGGGTATAGAAAAATGCATGTGGAAATTAAGTGCTTGCTGAGTGAATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTATAGAAAAATGCATGTGGAAATTAAGTGCTTGCTGAGTGAATA  727

seq1  ATGAGACTGGGAAAGTAATTGAACATCACTTCCAGTCAGAATTTTGGCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTGGGAAAGTAATTGAACATCACTTCCAGTCAGAATTTTGGCTT  777

seq1  AAATGGTAACAATAATGAAATACAAATCAGGGCAGTTTTATTAGTACTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTAACAATAATGAAATACAAATCAGGGCAGTTTTATTAGTACTCT  827

seq1  AAACTAGTAGAAATATTATTGTCAATGAAATAATCTCTCAAACAAAAATG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTAGAAATATTATTGTCAATGAAATAATCTCTCAAACAAAAATG  877

seq1  GTCACTGAATAAATGATATCTTTCCAGTAGCTGTTAACTCATGAGAAGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAATAAATGATATCTTTCCAGTAGCTGTTAACTCATGAGAAGTT  927

seq1  CTTTAAAAGACCAATATCACTATGTGTATTCATAGATATATAAATGTGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGACCAATATCACTATGTGTATTCATAGATATATAAATGTGTA  977

seq1  CAGAACTGTTACAATATTGTAATTGATTACTATAAAATAAATCTGTTCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGTTACAATATTGTAATTGATTACTATAAAATAAATCTGTTCAT  1027

seq1  ATACCTAGAGTTCTGTTTTTAATGAAATTACTCTCCATAGTTTGTTGTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGAGTTCTGTTTTTAATGAAATTACTCTCCATAGTTTGTTGTTT  1077

seq1  TCAAAGCATCTCTCCCAAGAGAGTGGTATGATGTTTTGTTCTAAGTCCAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCATCTCTCCCAAGAGAGTGGTATGATGTTTTGTTCTAAGTCCAT  1127

seq1  GCACAATAAATGATCTGGAATCATTAGAATATGGTGTTATGCACAAACAA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATAAATGATCTGGAATCATTAGAATATGGTGTTATGCACAAACAA  1177

seq1  CTAGACAGGAATTC  1206
      ||||||||||||||
seq2  CTAGACAGGAATTC  1191


seq1: chr12_62087164_62088296
seq2: B6Ng01-186C22.g_65_1196

seq1  GAATTCAGAGTATCCCAGCTAGATAAGAGAAATGAAATTACTGAATATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTATCCCAGCTAGATAAGAGAAATGAAATTACTGAATATCC  50

seq1  TCAAATAAATAAAATAGCTTTGTGGCTGGTGTATTTATATAGATCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAATAAAATAGCTTTGTGGCTGGTGTATTTATATAGATCTAACA  100

seq1  GTAATAATGAATCAATACAAAGACACCCAAGCATGATCAAACAGAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATGAATCAATACAAAGACACCCAAGCATGATCAAACAGAAAATA  150

seq1  AATGACATGATATAATTTTAATATTAGTAGATGGCATAAGTCTTTAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATGATATAATTTTAATATTAGTAGATGGCATAAGTCTTTAGGAG  200

seq1  TTGTACTGACCATATATGAGGAAGTAAGGGCTAACTGTTCTGGAGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGACCATATATGAGGAAGTAAGGGCTAACTGTTCTGGAGTTTGA  250

seq1  GATAACCCCTTTCTTTAAACAATAGGATAACACTTGTTTACTATTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCCCTTTCTTTAAACAATAGGATAACACTTGTTTACTATTCAATA  300

seq1  TATTAAAGAAAATATCTTCTTCCTCTAGTTGGTTATAAGGCATGAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAAAATATCTTCTTCCTCTAGTTGGTTATAAGGCATGAAATCA  350

seq1  TCCCTAAGTACAATATGTGTAATGCACACTCACTATAGACATGCCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGTACAATATGTGTAATGCACACTCACTATAGACATGCCAGGTT  400

seq1  GGACTTTTCCATTTGACATCCCTGGGACTTGGTAGGAAAGCTAGTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTCCATTTGACATCCCTGGGACTTGGTAGGAAAGCTAGTTGATG  450

seq1  ATGTAGAATTCAGCTTTCTCTTCTGACATGAGAAAGTAATCTCTTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAATTCAGCTTTCTCTTCTGACATGAGAAAGTAATCTCTTCATCT  500

seq1  TATTGAAGAGTTCTATGATCTTCTACTAGCATCCAGAGAACTGTAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGAGTTCTATGATCTTCTACTAGCATCCAGAGAACTGTAGCAAG  550

seq1  CTAATTGTTTACCTAGCATATATGGCAAATTCTAGGAATTTCCACAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTTACCTAGCATATATGGCAAATTCTAGGAATTTCCACAGTTC  600

seq1  TGATATGAAGTCTCCACTTTGAAGCAGCAATGACTATGGCCTATTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAAGTCTCCACTTTGAAGCAGCAATGACTATGGCCTATTTTTAA  650

seq1  TTTAAAACTCTAATTCTGGGAATATGATAGGTCACAAGACACCTAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTCTAATTCTGGGAATATGATAGGTCACAAGACACCTAACAAA  700

seq1  AGTATCAGACAGCTAACAGTCCATGAAAGGCTCCTGATTGAGACAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGACAGCTAACAGTCCATGAAAGGCTCCTGATTGAGACAGTGCT  750

seq1  ATGAAGTATGGGGGAAACATCTTATTTCTGATTTAAAAATAGCTTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTATGGGGGAAACATCTTATTTCTGATTTAAAAATAGCTTAAATA  800

seq1  AGTTTTACATGATAAATACAATTATATAGAATTTCAAATCATTAGACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATGATAAATACAATTATATAGAATTTCAAATCATTAGACATA  850

seq1  GAAAAATCTCAAATGAGAAAACATCAGAA-CCTAAAATAAAAAGGAGTTT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAAAATCTCAAATGAGAAAACATCAGAACCCTAAAATAAAAAGGAGTTT  900

seq1  ATAATATAAATAGCAATTTGAAGAAAAAATGATAAAAAAATCAATATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAATAGCAATTTGAAGAAAAAATGATAAAAAAATCAATATAAA  950

seq1  GGTCAAATATTCAAGTTTTTCAACATTTGTGGGCCAATAAAAGTTACAGG  999
      |||| |||||||||||||||||||| |||||||||||| |||||||||||
seq2  GGTC-AATATTCAAGTTTTTCAACA-TTGTGGGCCAAT-AAAGTTACAGG  997

seq1  ATTCAATGCATATAACTTATGAA-TAT-CAC-ATTCATACA-CACATACA  1045
      |||| |||||||||||||||||| ||| ||| ||||||||| ||||||||
seq2  ATTC-ATGCATATAACTTATGAATTATCCACAATTCATACACCACATACA  1046

seq1  CACACACA-AATACACACAAACACACACACAAGTGGATA-TACTTTAGCT  1093
      ||| |||| ||||| ||| ||||||||| | |||||||| ||||||||||
seq2  CAC-CACAGAATACCCAC-AACACACAC-CCAGTGGATATTACTTTAGCT  1093

seq1  ATGTTTCAAG-AAAAATTAAATAAGGGGTTATTTTCATAAG  1133
      |||||||| | ||||||||||||   |||||||||| ||||
seq2  ATGTTTCAGGAAAAAATTAAATA--CGGTTATTTTCCTAAG  1132


| Home | SequenceCutter | Blast | Download |