BAC Information

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BAC

Clone NameB6Ng01-186N10
Chromosome12 (Build37)
Map Location 85,085,996 - 85,171,883
singlet/doubletdoublet
Overlap genePapln, Numb
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1
Downstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N10.bB6Ng01-186N10.g
ACCGA011578GA011579
length1,166755
definitionB6Ng01-186N10.b B6Ng01-186N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,085,996 - 85,087,169)(85,171,129 - 85,171,883)
sequence
gaattcagaaactcagggccagcctggacaccatggtaatggcccttcca
gagggacaagggaaacctaacacataaatcaatctaaaactgcaataaac
cagcatttaaggacagccttaagtttttaaaaatatgatttctcacagat
atttttttcaatatggaataagatacagttactaagagactagataaatt
ttgtctcaataagagatttaaaaaaccgcattttggaatccagaaccaca
cattttgtgagtatcttcagtgggcataataatgtaagtataagatttca
aatggcataacagtgtttgtttcttttatttacatttagtttatcttttt
agctttattggtttcgttttatatgtatgagtatttacctgcaccacatg
catgcctgatgcccacagaagtcaaactagggcatcagatcccctgtgac
tggagtttctcatggctgtaatggttgtgagctgtcatgtggtactagga
accgaaccagggtcttctggaagaacagcaagcgctcttaactgtggagc
catctctccagccacccccaccttcattcctgacacagggtctcagcatg
ttgcccacactggctttgagactagtttttgccttctcaaaaacaaagac
aaaaataacccccaaaagctgggaatgtactgtagctccacggtatgtgc
ccagtgtacctgccatcctgcattcagatcccagaatgaccaccaccaca
aacctccacccccatactcaggttcattgatagtacactcacaccttggc
taggacaggcaggttggactgtgtaagaaacacaaattctccatgtcccc
ctgtgttgtagcaagtttgtctttctctattagtcaagtttgttgggcac
accagcaaatgctttaaggatgtcttctaaggaattctctgcagtgctca
gcctttcctggcctgagtggcagacaaagcaggttctatcttgatgagca
ttcattattgctctgagttcaaggtttcgacctgtttgcccagggcgcct
gactttcatagcactgccttgctctttcacagtggagactgcagtcttct
aataactgttcctcactctaaccatcgtaagcgagacacactaagttaca
atcgcaaagggatgac
gaattcatgtcactttggggttgctaagtttggctactaatgagtgcttt
tagttctcaatttgcttaataaccaaaacttttctgcttttttgatatag
tttatgttacctcttatattccctcatgtaaaaatttacaatatatcaaa
gagatagatttattttttgaatacctgaatctattgtagaaggaaaagtg
ggaaaataactaattgtagaacataaaacaaagcaactctgtccagatgg
tgccctgcagtcgtgtatatgcagaggcccttttatctcaggtgtggcac
atttaaattcttagaagcccagggcgcttccttgcattcttcagggttaa
gagaagaggacatgtctgtggcctgtgatccagggaactagccttgcaga
ttggctcccttatgtgactgttcccgaattaaatacaggctcagataatt
tagtttcccatttttatcaaaactagtttgaaagagaaatacaaaattta
gacttttttcttataaaataattctccattcctctagaataatgataaac
tagatgagtttaactaaggatgctttaaaaataattatttaaccttctta
aagaattgtttaagaattcttcttgcctctcttaccctttgctcttactc
tttctcccttgctccctctctccatgtggccattgccagcctctctctct
ctctctttctctctctctctttctctctccctccctccctccctccctcc
ctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85085996_85087169
seq2: B6Ng01-186N10.b_46_1211

seq1  GAATTCAGAAACTCAGGGCCAGCCTGGACACCATGGTAATGGCCCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACTCAGGGCCAGCCTGGACACCATGGTAATGGCCCTTCCA  50

seq1  GAGGGACAAGGGAAACCTAACACATAAATCAATCTAAAACTGCAATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAAGGGAAACCTAACACATAAATCAATCTAAAACTGCAATAAAC  100

seq1  CAGCATTTAAGGACAGCCTTAAGTTTTTAAAAATATGATTTCTCACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTAAGGACAGCCTTAAGTTTTTAAAAATATGATTTCTCACAGAT  150

seq1  ATTTTTTTCAATATGGAATAAGATACAGTTACTAAGAGACTAGATAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCAATATGGAATAAGATACAGTTACTAAGAGACTAGATAAATT  200

seq1  TTGTCTCAATAAGAGATTTAAAAAACCGCATTTTGGAATCCAGAACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAATAAGAGATTTAAAAAACCGCATTTTGGAATCCAGAACCACA  250

seq1  CATTTTGTGAGTATCTTCAGTGGGCATAATAATGTAAGTATAAGATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGAGTATCTTCAGTGGGCATAATAATGTAAGTATAAGATTTCA  300

seq1  AATGGCATAACAGTGTTTGTTTCTTTTATTTACATTTAGTTTATCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATAACAGTGTTTGTTTCTTTTATTTACATTTAGTTTATCTTTTT  350

seq1  AGCTTTATTGGTTTCGTTTTATATGTATGAGTATTTACCTGCACCACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTGGTTTCGTTTTATATGTATGAGTATTTACCTGCACCACATG  400

seq1  CATGCCTGATGCCCACAGAAGTCAAACTAGGGCATCAGATCCCCTGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGATGCCCACAGAAGTCAAACTAGGGCATCAGATCCCCTGTGAC  450

seq1  TGGAGTTTCTCATGGCTGTAATGGTTGTGAGCTGTCATGTGGTACTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTCTCATGGCTGTAATGGTTGTGAGCTGTCATGTGGTACTAGGA  500

seq1  ACCGAACCAGGGTCTTCTGGAAGAACAGCAAGCGCTCTTAACTGTGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAACCAGGGTCTTCTGGAAGAACAGCAAGCGCTCTTAACTGTGGAGC  550

seq1  CATCTCTCCAGCCACCCCCACCTTCATTCCTGACACAGGGTCTCAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCACCCCCACCTTCATTCCTGACACAGGGTCTCAGCATG  600

seq1  TTGCCCACACTGGCTTTGAGACTAGTTTTTGCCTTCTCAAAAACAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACACTGGCTTTGAGACTAGTTTTTGCCTTCTCAAAAACAAAGAC  650

seq1  AAAAATAACCCCCAAAAGCTGGGAATGTACTGTAGCTCCACGGTATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACCCCCAAAAGCTGGGAATGTACTGTAGCTCCACGGTATGTGC  700

seq1  CCAGTGTACCTGCCATCCTGCATTCAGATCCCAGAATGACCACCACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTACCTGCCATCCTGCATTCAGATCCCAGAATGACCACCACCACA  750

seq1  AACCTCCACCCCCATACTCAGGTTCATTGATAGTACACTCACACCTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACCCCCATACTCAGGTTCATTGATAGTACACTCACACCTTGGC  800

seq1  TAGGACAGGCAGGTTGGACTGTGTAAGAAACACAAATTCTCCATGTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGCAGGTTGGACTGTGTAAGAAACACAAATTCTCCATGTCCCC  850

seq1  CTGTGTTGTAGCAAGTTTGTCTTTCTCTATTAGTCAAGTTTGTTGGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTAGCAAGTTTGTCTTTCTCTATTAGTCAAGTTTGTTGGGCAC  900

seq1  ACCAGCAAATGCTTTAAGGATGTCTTCTAAGGAATTCTCTGCAGTGCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAATGCTTTAAGGATGTCTTCTAAGGAATTCTCTGCAGTGCTCA  950

seq1  GCCTTTCCTGGCCTGAGTGGCAGACAAAGCAGGTTCTATCTTGATGAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCTGGCCTGAGTGGCAGACAAAGCAGGTTCTATCTTGATGAGCA  1000

seq1  TTTCATTATTGCTCTGAGTTCAAGGTTTCGACCTGTTTGCCCAGGGCGCC  1050
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCATTATTGCTCTGAGTTCAAGGTTTCGACCTGTTTGCCCAGGGCGCC  1049

seq1  TGACTTCCATAAGCACCTGCCTTGCTC-TTCACAGTGGAGACTGCCAGTC  1099
      |||||| ||| |||| ||||||||||| |||||||||||||||| |||||
seq2  TGACTTTCAT-AGCA-CTGCCTTGCTCTTTCACAGTGGAGACTG-CAGTC  1096

seq1  TTCTAATTAACTGTTCCTCACTCTAACCAATCGTTAGCCAGACACACCTA  1149
      |||||| ||||||||||||||||||||| ||||| ||| ||||||| |||
seq2  TTCTAA-TAACTGTTCCTCACTCTAACC-ATCGTAAGCGAGACACA-CTA  1143

seq1  AGTTTACATTCGCAAAAGGGATGAC  1174
      || ||||| |||| |||||||||||
seq2  AG-TTACAATCGC-AAAGGGATGAC  1166

seq1: chr12_85171129_85171883
seq2: B6Ng01-186N10.g_68_822 (reverse)

seq1  GGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAAAGAGAGAGAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAAAGAGAGAGAGAGAAA  50

seq1  GAGAGAGAGAGAGAGGCTGGCAATGGCCACATGGAGAGAGGGAGCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGGCTGGCAATGGCCACATGGAGAGAGGGAGCAAGGG  100

seq1  AGAAAGAGTAAGAGCAAAGGGTAAGAGAGGCAAGAAGAATTCTTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTAAGAGCAAAGGGTAAGAGAGGCAAGAAGAATTCTTAAACAA  150

seq1  TTCTTTAAGAAGGTTAAATAATTATTTTTAAAGCATCCTTAGTTAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGAAGGTTAAATAATTATTTTTAAAGCATCCTTAGTTAAACTC  200

seq1  ATCTAGTTTATCATTATTCTAGAGGAATGGAGAATTATTTTATAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTTATCATTATTCTAGAGGAATGGAGAATTATTTTATAAGAAAA  250

seq1  AAGTCTAAATTTTGTATTTCTCTTTCAAACTAGTTTTGATAAAAATGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAATTTTGTATTTCTCTTTCAAACTAGTTTTGATAAAAATGGGA  300

seq1  AACTAAATTATCTGAGCCTGTATTTAATTCGGGAACAGTCACATAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTATCTGAGCCTGTATTTAATTCGGGAACAGTCACATAAGGGA  350

seq1  GCCAATCTGCAAGGCTAGTTCCCTGGATCACAGGCCACAGACATGTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTGCAAGGCTAGTTCCCTGGATCACAGGCCACAGACATGTCCTC  400

seq1  TTCTCTTAACCCTGAAGAATGCAAGGAAGCGCCCTGGGCTTCTAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAACCCTGAAGAATGCAAGGAAGCGCCCTGGGCTTCTAAGAATT  450

seq1  TAAATGTGCCACACCTGAGATAAAAGGGCCTCTGCATATACACGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGCCACACCTGAGATAAAAGGGCCTCTGCATATACACGACTGCA  500

seq1  GGGCACCATCTGGACAGAGTTGCTTTGTTTTATGTTCTACAATTAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCATCTGGACAGAGTTGCTTTGTTTTATGTTCTACAATTAGTTAT  550

seq1  TTTCCCACTTTTCCTTCTACAATAGATTCAGGTATTCAAAAAATAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTTTTCCTTCTACAATAGATTCAGGTATTCAAAAAATAAATCT  600

seq1  ATCTCTTTGATATATTGTAAATTTTTACATGAGGGAATATAAGAGGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTGATATATTGTAAATTTTTACATGAGGGAATATAAGAGGTAAC  650

seq1  ATAAACTATATCAAAAAAGCAGAAAAGTTTTGGTTATTAAGCAAATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATATCAAAAAAGCAGAAAAGTTTTGGTTATTAAGCAAATTGAG  700

seq1  AACTAAAAGCACTCATTAGTAGCCAAACTTAGCAACCCCAAAGTGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGCACTCATTAGTAGCCAAACTTAGCAACCCCAAAGTGACATG  750

seq1  AATTC  755
      |||||
seq2  AATTC  755