BAC Information

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BAC

Clone NameB6Ng01-186N23
Chromosome12 (Build37)
Map Location 87,097,336 - 87,254,651
singlet/doubletdoublet
Overlap geneBC011209, 0610007P14Rik, Ttll5
Upstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N23.bB6Ng01-186N23.g
ACCGA011604GA011605
length209988
definitionB6Ng01-186N23.b B6Ng01-186N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,097,336 - 87,097,544)(87,253,665 - 87,254,651)
sequence
cagttctgccttcttttgctctgaaggcaaggggcccagccctccccaaa
catggccatgtggctgtgtagaaagacagatgtcctgtgcaggcatcctt
gtccagggagggcccatagacacataagcaatgttttgtagttttcacca
ttaaagtttctctatgtttatctggctcccctctgatgttagcaatccag
atccgtttg
gaattcaccacagcgctcctatgctagtgtctcgcatcctaagattgcac
acaccagcctttacactcagcttttaaacagtctttatgtctaagttttt
tttttcttttctccaacttcacaactggtggtaatatacccaggaagtct
attacctgaccaaatgttatagaaaacttctgacttttgtttgaaaataa
gctacatgaatttatttcagttttcccttaaaaggcaatcagaatgactt
ccttaaaagaaaagttagatttatgcttcagaaagcttgtagtagatgac
gggatggccctgtgggtagagtaacttgttgtacaagcctggcaacccga
ctttgattacgtgaactcaggaagtaaaggaggaagaagagaatcaactc
cgtaaatatcttccttgcctcacacatgtgccgtgcgtgcgtggcacaag
tacccacatgatcgtgtacggagacacacaaacagaaacttaagttactg
gacgagaaactaagttttagttgactcataaatgaaaactagctagacgc
aaggagctgtgctgtcttcttgttagactgctttctgtagagcacagcac
aagacacaaggaaactgggtaattctcgggaacctgcccatgtgtggagg
gaggctcaagcagttctgtggcagttcaagtcttaactgaggcaaagcca
tgttggtctttcctctggttattttcagctctactggatgaaagctctcc
atgtgctgacttccagcaggtccagtcagagccttgccctaccacagcct
cagcgtaaccatggagacagataacatgctgacagtttgcaactctcact
attaattactctaggctctttcacccccaccaagcaaaaaggtaattatt
tattggttaaaatgatgtatatagagttaaagtaaatcttatacctattt
tctaatagtgggcttccagaatacattttcaatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87097336_87097544
seq2: B6Ng01-186N23.b_50_258

seq1  CAGTTCTGCCTTCTTTTGCTCTGAAGGCCAAGGGGCCCAGCCCTCCCCAA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTTCTGCCTTCTTTTGCTCTGAAGG-CAAGGGGCCCAGCCCTCCCCAA  49

seq1  ACATGGCCATGTGGCTGTGTAGAAAGACAGATGTCCTGTGCAGGCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCATGTGGCTGTGTAGAAAGACAGATGTCCTGTGCAGGCATCCT  99

seq1  TGTCCAGGGAGGGCCCAGAGACACATAAGCAATGTTTTGTAGTTTTCACC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGAGGGCCCATAGACACATAAGCAATGTTTTGTAGTTTTCACC  149

seq1  ATAAAAGTTTCTCTATGTTTAGCTGGCTCCCCTCTGAGGTTAGCAATCCA  200
      || |||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  ATTAAAGTTTCTCTATGTTTATCTGGCTCCCCTCTGATGTTAGCAATCCA  199

seq1  GA-GCGTTTG  209
      ||  ||||||
seq2  GATCCGTTTG  209

seq1: chr12_87253665_87254651
seq2: B6Ng01-186N23.g_66_1053 (reverse)

seq1  TTTCTATTGAAAATGTATTCTGG-AGCCACCTATTAGAAAATAGGTATAA  49
      ||||||||||||||||||||||| ||||  ||||||||||||||||||||
seq2  TTTCTATTGAAAATGTATTCTGGAAGCCCACTATTAGAAAATAGGTATAA  50

seq1  GATTTAACTTTAAACTCTATATACATCATTTTAACCAAT-AATAATTACC  98
      ||||| ||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GATTT-ACTTT-AACTCTATATACATCATTTTAACCAATAAATAATTACC  98

seq1  TTTTTGCTTGGT-GGGGTGAAAGAGCCTAGAGTAATTAATAGTGAGAGTT  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTGGTGGGGGTGAAAGAGCCTAGAGTAATTAATAGTGAGAGTT  148

seq1  GCAAACTGTCAGCATGTTATCTGTCTCCATGGTTACGCTGAGGCTGTGGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGTCAGCATGTTATCTGTCTCCATGGTTACGCTGAGGCTGTGGT  198

seq1  AGGGCAAGGCTCTGACTGGACCTGCTGGAAGTCAGCACATGGAGAGCTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGGCTCTGACTGGACCTGCTGGAAGTCAGCACATGGAGAGCTTT  248

seq1  CATCCAGTAGAGCTGAAAATAACCAGAGGAAAGACCAACATGGCTTTGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTAGAGCTGAAAATAACCAGAGGAAAGACCAACATGGCTTTGCC  298

seq1  TCAGTTAAGACTTGAACTGCCACAGAACTGCTTGAGCCTCCCTCCACACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAGACTTGAACTGCCACAGAACTGCTTGAGCCTCCCTCCACACA  348

seq1  TGGGCAGGTTCCCGAGAATTACCCAGTTTCCTTGTGTCTTGTGCTGTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTTCCCGAGAATTACCCAGTTTCCTTGTGTCTTGTGCTGTGCT  398

seq1  CTACAGAAAGCAGTCTAACAAGAAGACAGCACAGCTCCTTGCGTCTAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAAGCAGTCTAACAAGAAGACAGCACAGCTCCTTGCGTCTAGCT  448

seq1  AGTTTTCATTTATGAGTCAACTAAAACTTAGTTTCTCGTCCAGTAACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATTTATGAGTCAACTAAAACTTAGTTTCTCGTCCAGTAACTTA  498

seq1  AGTTTCTGTTTGTGTGTCTCCGTACACGATCATGTGGGTACTTGTGCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTTTGTGTGTCTCCGTACACGATCATGTGGGTACTTGTGCCAC  548

seq1  GCACGCACGGCACATGTGTGAGGCAAGGAAGATATTTACGGAGTTGATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACGGCACATGTGTGAGGCAAGGAAGATATTTACGGAGTTGATTC  598

seq1  TCTTCTTCCTCCTTTACTTCCTGAGTTCACGTAATCAAAGTCGGGTTGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTCCTTTACTTCCTGAGTTCACGTAATCAAAGTCGGGTTGCC  648

seq1  AGGCTTGTACAACAAGTTACTCTACCCACAGGGCCATCCCGTCATCTACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTACAACAAGTTACTCTACCCACAGGGCCATCCCGTCATCTACT  698

seq1  ACAAGCTTTCTGAAGCATAAATCTAACTTTTCTTTTAAGGAAGTCATTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTCTGAAGCATAAATCTAACTTTTCTTTTAAGGAAGTCATTCT  748

seq1  GATTGCCTTTTAAGGGAAAACTGAAATAAATTCATGTAGCTTATTTTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTTTTAAGGGAAAACTGAAATAAATTCATGTAGCTTATTTTCAA  798

seq1  ACAAAAGTCAGAAGTTTTCTATAACATTTGGTCAGGTAATAGACTTCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTCAGAAGTTTTCTATAACATTTGGTCAGGTAATAGACTTCCTG  848

seq1  GGTATATTACCACCAGTTGTGAAGTTGGAGAAAAGAAAAAAAAAACTTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTACCACCAGTTGTGAAGTTGGAGAAAAGAAAAAAAAAACTTAG  898

seq1  ACATAAAGACTGTTTAAAAGCTGAGTGTAAAGGCTGGTGTGTGCAATCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGACTGTTTAAAAGCTGAGTGTAAAGGCTGGTGTGTGCAATCTT  948

seq1  AGGATGCGAGACACTAGCATAGGAGCGCTGTGGTGAATTC  987
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCGAGACACTAGCATAGGAGCGCTGTGGTGAATTC  988