BAC Information

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BAC

Clone NameB6Ng01-187B18
Chromosome12 (Build37)
Map Location 100,034,147 - 100,035,249
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187B18.bB6Ng01-187B18.g
ACCGA011773GA011774
length1,1081,157
definitionB6Ng01-187B18.b B6Ng01-187B18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcagagtaagccagtagcaccatggaaatctgctgttgctgga
gctacatggaaagagctgctctaattaaaagcgagtaataaaaaccaaaa
aacaaaacagaaggctgtctaactcagatgcctgccattgaatccccttg
tcctaagtggactattttgttgggcctcagtagaggaggatgtgcttaga
cctagggcagttgtatgtccagggtacccaaaggggctttcccttttctg
aggaaaagcggagcaggcactgagggaaaggatttgtaaaggaggacctg
gcaggagaggagggatggggaaaagtcaggatgtcaagtgaagaaatagt
caatagtgaggattgtcaatcctatcttaccatagttcaaccagcagatt
caagacaatacagaggtttaagtagtgtttagatacaagttttctgtgtt
agtgaacagcaaataacagcaccactatgtatcattaagtactgcttatt
aagcaaagcgcggggatcacagctgctctctagtttctgctgcatctcac
tggctcaaggaacaccttactttgcctctgcacacagaccgaacacaatc
tgtgacttgtcctgtctcaagcctgaaggcccggcatcgcctcagttcct
gatcccacagtttaactgcgcctccttcctttgacctaggtatataaaaa
caaaacccaagtaagtatttataattgaccactacaataattttcactat
aaacacttagttgtcaggagtattttaaataccttatttataacttccag
tattctaaattttcaggaaatttacggatacatactgtatttcaatcaag
atacatatactcagttcagttaattttattttgtgaaataaaattttctt
tctgacacaagcataatttgtatttagtccatgattcatcaccaatgcac
tttttcattatagctctccactaagaaaatccacattttttaaataattg
tgtgtatgtgtacataccacgggtgatgatggaaggtcagaggacgactc
tgaatctggttgccctcttacctctttacctggggaatgaacgtcatccc
ccaggaat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacaatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaagagctaaagggatcttcacctatag
tggacacattatgactaccagtacccctgagctctgactctagctgcata
tgtatcaaagatgctagtcgtcatcactgaaagagagtcatgacacgcga
ctggtgccgtacaggaaacgcagtcaatgagtgagcaagtgctcgtcgct
acagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100034147_100035249
seq2: B6Ng01-187B18.b_48_1155

seq1  GAATTCCTCAGAGTAAGCCAGTAGCACCATGGAAATCTGCTGTTGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGTAAGCCAGTAGCACCATGGAAATCTGCTGTTGCTGGA  50

seq1  GCTACATGGAAAGAGCTGCTCTAATTAAAAGCGAGTAATAAAAACCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGGAAAGAGCTGCTCTAATTAAAAGCGAGTAATAAAAACCAAAA  100

seq1  AACAAAACAGAAGGCTGTCTAACTCAGATGCCTGCCATTGAATCCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGAAGGCTGTCTAACTCAGATGCCTGCCATTGAATCCCCTTG  150

seq1  TCCTAAGTGGACTATTTTGTTGGGCCTCAGTAGAGGAGGATGTGCTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGGACTATTTTGTTGGGCCTCAGTAGAGGAGGATGTGCTTAGA  200

seq1  CCTAGGGCAGTTGTATGTCCAGGGTACCCAAAGGGGCTTTCCCTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCAGTTGTATGTCCAGGGTACCCAAAGGGGCTTTCCCTTTTCTG  250

seq1  AGGAAAAGCGGAGCAGGCACTGAGGGAAAGGATTTGTAAAGGAGGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCGGAGCAGGCACTGAGGGAAAGGATTTGTAAAGGAGGACCTG  300

seq1  GCAGGAGAGGAGGGATGGGGAAAAGTCAGGATGTCAAGTGAAGAAATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGGAGGGATGGGGAAAAGTCAGGATGTCAAGTGAAGAAATAGT  350

seq1  CAATAGTGAGGATTGTCAATCCTATCTTACCATAGTTCAACCAGCAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGAGGATTGTCAATCCTATCTTACCATAGTTCAACCAGCAGATT  400

seq1  CAAGACAATACAGAGGTTTAAGTAGTGTTTAGATACAAGTTTTCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAATACAGAGGTTTAAGTAGTGTTTAGATACAAGTTTTCTGTGTT  450

seq1  AGTGAACAGCAAATAACAGCACCACTATGTATCATTAAGTACTGCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAGCAAATAACAGCACCACTATGTATCATTAAGTACTGCTTATT  500

seq1  AAGCAAAGCGCGGGGATCACAGCTGCTCTCTAGTTTCTGCTGCATCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGCGCGGGGATCACAGCTGCTCTCTAGTTTCTGCTGCATCTCAC  550

seq1  TGGCTCAAGGAACACCTTACTTTGCCTCTGCACACAGACCGAACACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAGGAACACCTTACTTTGCCTCTGCACACAGACCGAACACAATC  600

seq1  TGTGACTTGTCCTGTCTCAAGCCTGAAGGCCCGGCATCGCCTCAGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTGTCCTGTCTCAAGCCTGAAGGCCCGGCATCGCCTCAGTTCCT  650

seq1  GATCCCACAGTTTAACTGCGCCTCCTTCCTTTGACCTAGGTATATAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACAGTTTAACTGCGCCTCCTTCCTTTGACCTAGGTATATAAAAA  700

seq1  CAAAACCCAAGTAAGTATTTATAATTGACCACTACAATAATTTTCACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAGTAAGTATTTATAATTGACCACTACAATAATTTTCACTAT  750

seq1  AAACACTTAGTTGTCAGGAGTATTTTAAATACCTTATTTATAACTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTAGTTGTCAGGAGTATTTTAAATACCTTATTTATAACTTCCAG  800

seq1  TATTCTAAATTTTCAGGAAATTTACGGATACATACTGTATTTCAATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAATTTTCAGGAAATTTACGGATACATACTGTATTTCAATCAAG  850

seq1  ATACATATACTCAGTTCAGTTAATTTTATTTTGTGAAATAAAATTTTC-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATACATATACTCAGTTCAGTTAATTTTATTTTGTGAAATAAAATTTTCTT  900

seq1  TCTGACACAAGCATAA-TTGTATTTAGTCCATGATTCATCA-CAATGCAC  947
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TCTGACACAAGCATAATTTGTATTTAGTCCATGATTCATCACCAATGCAC  950

seq1  -TTTTCATTATAGCTCTCCACTAAGAAAATCCACATTTTTTAAATAATTG  996
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTATAGCTCTCCACTAAGAAAATCCACATTTTTTAAATAATTG  1000

seq1  TGTGTATGTGTACATACCACGGGGTGATGATGG-AGGTCAGAGGACGACT  1045
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TGTGTATGTGTACATACCAC-GGGTGATGATGGAAGGTCAGAGGACGACT  1049

seq1  CTGGAATCTGTTGCCCCTTCTACCTCTTTACCTGGGGATTGAAC-TCAT-  1093
      || ||||||| |  ||||  |||||||||||||||||| ||||| |||| 
seq2  CT-GAATCTGGTTGCCCTCTTACCTCTTTACCTGGGGAATGAACGTCATC  1098

seq1  CCCCAGGAAT  1103
      ||||||||||
seq2  CCCCAGGAAT  1108