BAC Information

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BAC

Clone NameB6Ng01-188M24
Chromosome12 (Build37)
Map Location 76,766,776 - 76,902,558
singlet/doubletdoublet
Overlap geneWdr89, Sgpp1
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, LOC665931
Downstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188M24.bB6Ng01-188M24.g
ACCGA013009GA013010
length1,060951
definitionB6Ng01-188M24.b B6Ng01-188M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,766,776 - 76,767,825)(76,902,036 - 76,902,558)
sequence
gaattcttaagatgacacctttctgagtgattaattctaattttacagca
aaggattattcagttacctctgaagtttgagagatgttcaggtctttcat
agcagtttgaaggtctaccttaccagttaccttacgtaagctttttcctc
ttaaagtccccactacagatgctgctatgccacagggtatttttaccctt
cagagtctttgcggagggctgagtaatgactcccaaagacacataagtcc
tacctaatccctagaacacatcaggacttctcgttctgacaaaaaaaaaa
aaaaaaaaaaaaaaggcttcacatttctaactaagcataatggaaaaaat
aaaatggactatctgggaaggctctacatatcacaagtttcctcagaggg
gagggaggcagggagtggagacctggctggaggaggaggaggcagatggt
agtggaagcagccattactgactgctacaagaggaaggtgctacaagcag
ggttcatctgtaatcccagcacctggaaacttaatagagaaaggttacca
tgcattcaaggccagcaggggctagagcgggaaaccatctctaagaggta
aaaagagccacagcctaaccaatatagaagctcaaaaaggctagaaaaca
cagcttccccaagagcaccaagaagttcaggaggcctttgataccttgac
attagcccagtcacaaattttagttgaaagatgatacattcgtgttgctc
atttacctatgtgcgcatgtctgcaagtgcctgtgtgctggtgcctgcag
aggccagaagcagctccagctcctctggagctgaaatgaatgagccttgt
gagctgctcactgtggatgctgggagatgggagcctgggtccttcttgca
gagcagggagcttttacagggtcagggagacagcccaggtctctcttctg
tagccttggctgttccagaaacttcactaggtagaactccactgggcctt
gaactcagaagaatctggcagcctctgcttcagcatgctgggatttaaag
catagaccac
gaattcacatgaccatctcaataaatgctagaaccaggatgcagaactca
agcagaggccatgaaggaacaatgctttttttttttcctgctccctctct
ctgacttctcagtcacttttcttttacagttcaggcacatgtggctaggg
ttagcactacccacagtgggctggagcctcctacgtcaatgagccatttg
aaaaataccctgcgacatgctcacgggtcaagctgatggaggcagctcct
cactcgaggttctcgccttggcttcccttggtgatggactggagtctgtt
agccaaataaaccctcttctcctcaagttgcttttggccaatgctttata
acagaaacagaaatcaacctgaatcaacataaagggcaaaagcaaagtag
ccccatttacagatgacatggcctatacttaaagaccctgcagggcagag
aatatagctcagttgtggaaggttacctagtgtgcataaggcactaaagt
caatccccagcaccacagaaacaacagtaacccccagaactcatccagaa
ccactttgagctgttaaacttttttttggcaaagcagcaggatgcaaaat
aaacatatacacaaaaaagtggattgcctacattccaataatgaacgttc
taggaaagaaattggagcatgatttgtgtgtatgcatgtggtggtagtgg
ggctcctattcacaatagcttaaaaataaaccaacctagtagactagggc
tgcagtgatttccctctcccaagcttgaccatgacatccaaggacaatat
gatgaagaaagatgcaaaaagtcagataagaaaggaacacactggggctg
gagagatggctcagtgggtaagagcacccgactgctcttctggaggccct
gagttcaaaaccacatggtggctcacaaccatctgtaatgggatctgatg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76766776_76767825
seq2: B6Ng01-188M24.b_48_1107

seq1  GAATTCTTAAGATGACACCTTTCTGAGTGATTAATTCTAATTTTACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGATGACACCTTTCTGAGTGATTAATTCTAATTTTACAGCA  50

seq1  AAGGATTATTCAGTTACCTCTGAAGTTTGAGAGATGTTCAGGTCTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTATTCAGTTACCTCTGAAGTTTGAGAGATGTTCAGGTCTTTCAT  100

seq1  AGCAGTTTGAAGGTCTACCTTACCAGTTACCTTACGTAAGCTTTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTGAAGGTCTACCTTACCAGTTACCTTACGTAAGCTTTTTCCTC  150

seq1  TTAAAGTCCCCACTACAGATGCTGCTATGCCACAGGGTATTTTTACCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCCCCACTACAGATGCTGCTATGCCACAGGGTATTTTTACCCTT  200

seq1  CAGAGTCTTTGCGGAGGGCTGAGTAATGACTCCCAAAGACACATAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTTTGCGGAGGGCTGAGTAATGACTCCCAAAGACACATAAGTCC  250

seq1  TACCTAATCCCTAGAACACATCAGGACTTCTCGTTCTGACAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATCCCTAGAACACATCAGGACTTCTCGTTCTGACAAAAAAAAAA  300

seq1  AAAAAAAAAAAAAAGGCTTCACATTTCTAACTAAGCATAATGGAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGGCTTCACATTTCTAACTAAGCATAATGGAAAAAAT  350

seq1  AAAATGGACTATCTGGGAAGGCTCTACATATCACAAGTTTCCTCAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTATCTGGGAAGGCTCTACATATCACAAGTTTCCTCAGAGGG  400

seq1  GAGGGAGGCAGGGAGTGGAGACCTGGCTGGAGGAGGAGGAGGCAGATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGCAGGGAGTGGAGACCTGGCTGGAGGAGGAGGAGGCAGATGGT  450

seq1  AGTGGAAGCAGCCATTACTGACTGCTACAAGAGGAAGGTGCTACAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGCAGCCATTACTGACTGCTACAAGAGGAAGGTGCTACAAGCAG  500

seq1  GGTTCATCTGTAATCCCAGCACCTGGAAACTTAATAGAGAAAGGTTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATCTGTAATCCCAGCACCTGGAAACTTAATAGAGAAAGGTTACCA  550

seq1  TGCATTCAAGGCCAGCAGGGGCTAGAGCGGGAAACCATCTCTAAGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAAGGCCAGCAGGGGCTAGAGCGGGAAACCATCTCTAAGAGGTA  600

seq1  AAAAGAGCCACAGCCTAACCAATATAGAAGCTCAAAAAGGCTAGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCCACAGCCTAACCAATATAGAAGCTCAAAAAGGCTAGAAAACA  650

seq1  CAGCTTCCCCAAGAGCACCAAGAAGTTCAGGAGGCCTTTGATACCTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCCAAGAGCACCAAGAAGTTCAGGAGGCCTTTGATACCTTGAC  700

seq1  ATTAGCCCAGTCACAAATTTTAGTTGAAAGATGATACATTCGTGTTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCAGTCACAAATTTTAGTTGAAAGATGATACATTCGTGTTGCTC  750

seq1  ATTTACCTATGTGCGCATGTCTGCAAGTGCCTGTGTGCTGGTGCCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTATGTGCGCATGTCTGCAAGTGCCTGTGTGCTGGTGCCTGCAG  800

seq1  AGGCCAGAAGCAGCTCCAGCTCCTCTGGAGCTGAAATGAATGAGCCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAGCAGCTCCAGCTCCTCTGGAGCTGAAATGAATGAGCCTTGT  850

seq1  GAGCTGCTCACTGTGGATGCT-GGAGAT-GGAGCCTGGGTCC-TCTGCAA  897
      ||||||||||||||||||||| |||||| ||||||||||||| |||   |
seq2  GAGCTGCTCACTGTGGATGCTGGGAGATGGGAGCCTGGGTCCTTCTTGCA  900

seq1  GAGCAGGGAGCTTTTACA-GGTCA-GGAGACAGCCCAGGTCTCTC-TCTG  944
      |||||||||||||||||| ||||| |||||||||||||||||||| ||||
seq2  GAGCAGGGAGCTTTTACAGGGTCAGGGAGACAGCCCAGGTCTCTCTTCTG  950

seq1  TAGCCTTGGCTGTTCCAGAA--CTCACTAGGTAGAACT-CACT-GGCCTT  990
      ||||||||||||||||||||   ||||||||||||||| |||| ||||||
seq2  TAGCCTTGGCTGTTCCAGAAACTTCACTAGGTAGAACTCCACTGGGCCTT  1000

seq1  GAACTCAAGAG-ATCTGCCAGCCTCTGCCTCCAGCATGCTGGGATTAAAG  1039
      |||||||  || ||||| ||||||||| || ||||||||||||||| || 
seq2  GAACTCAGAAGAATCTGGCAGCCTCTG-CTTCAGCATGCTGGGATTTAAA  1049

seq1  GCATAGACCAC  1050
      |||||||||||
seq2  GCATAGACCAC  1060

seq1: chr12_76902036_76902558
seq2: B6Ng01-188M24.g_68_590 (reverse)

seq1  TGTTTCTGTGGTGCTGGGGATTGACTTTAGTGCCTTATGCACACTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGGTGCTGGGGATTGACTTTAGTGCCTTATGCACACTAGGTA  50

seq1  ACCTTCCACAACTGAGCTATATTCTCTGCCCTGCAGGGTCTTTAAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACAACTGAGCTATATTCTCTGCCCTGCAGGGTCTTTAAGTATA  100

seq1  GGCCATGTCATCTGTAAATGGGGCTACTTTGCTTTTGCCCTTTATGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTCATCTGTAAATGGGGCTACTTTGCTTTTGCCCTTTATGTTGA  150

seq1  TTCAGGTTGATTTCTGTTTCTGTTATAAAGCATTGGCCAAAAGCAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTGATTTCTGTTTCTGTTATAAAGCATTGGCCAAAAGCAACTTG  200

seq1  AGGAGAAGAGGGTTTATTTGGCTAACAGACTCCAGTCCATCACCAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGAGGGTTTATTTGGCTAACAGACTCCAGTCCATCACCAAGGGA  250

seq1  AGCCAAGGCGAGAACCTCGAGTGAGGAGCTGCCTCCATCAGCTTGACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCGAGAACCTCGAGTGAGGAGCTGCCTCCATCAGCTTGACCCG  300

seq1  TGAGCATGTCGCAGGGTATTTTTCAAATGGCTCATTGACGTAGGAGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTCGCAGGGTATTTTTCAAATGGCTCATTGACGTAGGAGGCTC  350

seq1  CAGCCCACTGTGGGTAGTGCTAACCCTAGCCACATGTGCCTGAACTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACTGTGGGTAGTGCTAACCCTAGCCACATGTGCCTGAACTGTAA  400

seq1  AAGAAAAGTGACTGAGAAGTCAGAGAGAGGGAGCAGGAAAAAAAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTGACTGAGAAGTCAGAGAGAGGGAGCAGGAAAAAAAAAAAGC  450

seq1  ATTGTTCCTTCATGGCCTCTGCTTGAGTTCTGCATCCTGGTTCTAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCTTCATGGCCTCTGCTTGAGTTCTGCATCCTGGTTCTAGCATT  500

seq1  TATTGAGATGGTCATGTGAATTC  523
      |||||||||||||||||||||||
seq2  TATTGAGATGGTCATGTGAATTC  523