BAC Information

Click to search

BAC

Clone NameB6Ng01-188P16
Chromosome12 (Build37)
Map Location 120,967,188 - 120,968,341
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188P16.bB6Ng01-188P16.g
ACCGA013123GA013124
length9501,158
definitionB6Ng01-188P16.b B6Ng01-188P16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaacccatcttgtcctggtcttcttttggttgggagac
tattaatgactgcttctctttctataggggatatgggactgtttaggtca
tcaacctgatcttgatcctgatttaacttatttacctggtatctgtctag
aaatttgtccatttcatccaggttttccagttttgttgaggatagccttt
tgtagtaggatctgatgatgttttcgatttcttcaggttctgttcttatg
tctcccttttcatttctgattttgttaattaggatactgtccctgtgtcc
tctagtgagtctggctaagggtttatctatcttgttgattttctcaagga
accagctcctggtttggttgactctttgaacagttctttttgtttccact
tggttgattctagtcctgagtttgattatttcctgctgtctattcctctt
gggtgaatttgcttccttttgttctagagcttttaggtgttctctcaagc
tggtagtgtatgctctctagtttctttttggaggcactcagagttatgag
ttttcctcttaggaatgctttcattgtgtcctataagtttgggtatgttg
tggcttcattttcattaaattataaaaagtctttaatttctttctttatt
tcttctttgaccaaggtatcattgagtagagtgttcttcaccttccctgt
gaatgttggctttctattatttatgttgttattgaagatcagccttagtc
tgtggtaatctgatagaatgcatgggtaatttcaatatttttgtatctgt
tgaggcctgttttgtgattaattatatggttgattttggagaaggtgcca
tgaggtgctgagaagaaggtatatccctcttgttttaggataaaaatgtt
ctgtagaatatctgtcaaatccattttgtttcataacctcatgttagttt


gaattctgtagggattgtatatcagatatttacattacagtttataacag
tagcaaaattacagttgtgaagtagcaacgaaataattttatgattaggg
gtcatcacaacatgaggaattgtattaaaatgttgcctcagtagaatggt
tgagagctactaatccagagtaggactatttcaatgttgtgatttgttgc
gaccattagttatattaataaaaaaaatagtccaaatgatcagccaaaga
agacaagtaaaaatttaataaaattatctaccctttaaaaagaatagcta
acatagtcactgaaagaaatatgcttctgatccatagttacatgaacaaa
agtatatttctgtcctcctatttgcagggatcaagtgtgtaaatgagcat
ggaaagcaacagtatatgccaagcccactaaaatctgaagaaacacaata
accaggtcttcttaaatcatgagagaagggaggtcagtgatcaaaccaca
gtcctcaaaatctgagggatggacggatacagaaaatcacatactgccca
gcagaaaccataaatgcaggtctctatgggaatcagagcagaaatcatca
tagaaatttgcacctgaatgtgattctcagactgccatggaatctctagt
ggctcagtgtgtacagggatgctcagccacttctgtgtgttttgctttga
gcaatcaccctcaattctctcagggaatatttgggaaatactctaggact
tcaactaggtaaagaatgaagtaacttctgaaatacactgaaatagtctg
ttcttcctgaaaaggtctgaactgagggaaaaccatttttaccagagctt
accctacacttttgtgttgttttgtttctgtcttttttcccaaacctcac
ttacctgtggaagggaaatccccagattcgcccctcttaaacattgcata
tccccagtggtatgaagctatgctgagaaacactgggtaaacttcacagc
ccagagaacatggacttcactactgtagtaaagaaccatcctaccttctc
agcacaaaaataaacacaccatactaaaaattggccaggatgatcaaatc
aacacctgaaagcaggtccgaatgactaaggaggaaggatcttttttttt
caatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120967188_120968341
seq2: B6Ng01-188P16.g_65_1222

seq1  GAATTCTGTAGGGATTGTATATCAGATATTTACATTACAGTTTATAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGGGATTGTATATCAGATATTTACATTACAGTTTATAACAG  50

seq1  TAGCAAAATTACAGTTGTGAAGTAGCAACGAAATAATTTTATGATTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAATTACAGTTGTGAAGTAGCAACGAAATAATTTTATGATTAGGG  100

seq1  GTCATCACAACATGAGGAATTGTATTAAAATGTTGCCTCAGTAGAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACAACATGAGGAATTGTATTAAAATGTTGCCTCAGTAGAATGGT  150

seq1  TGAGAGCTACTAATCCAGAGTAGGACTATTTCAATGTTGTGATTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTACTAATCCAGAGTAGGACTATTTCAATGTTGTGATTTGTTGC  200

seq1  GACCATTAGTTATATTAATAAAAAAAATAGTCCAAATGATCAGCCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAGTTATATTAATAAAAAAAATAGTCCAAATGATCAGCCAAAGA  250

seq1  AGACAAGTAAAAATTTAATAAAATTATCTACCCTTTAAAAAGAATAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTAAAAATTTAATAAAATTATCTACCCTTTAAAAAGAATAGCTA  300

seq1  ACATAGTCACTGAAAGAAATATGCTTCTGATCCATAGTTACATGAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCACTGAAAGAAATATGCTTCTGATCCATAGTTACATGAACAAA  350

seq1  AGTATATTTCTGTCCTCCTATTTGCAGGGATCAAGTGTGTAAATGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTCTGTCCTCCTATTTGCAGGGATCAAGTGTGTAAATGAGCAT  400

seq1  GGAAAGCAACAGTATATGCCAAGCCCACTAAAATCTGAAGAAACACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAACAGTATATGCCAAGCCCACTAAAATCTGAAGAAACACAATA  450

seq1  ACCAGGTCTTCTTAAATCATGAGAGAAGGGAGGTCAGTGATCAAACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCTTCTTAAATCATGAGAGAAGGGAGGTCAGTGATCAAACCACA  500

seq1  GTCCTCAAAATCTGAGGGATGGACGGATACAGAAAATCACATACTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAAATCTGAGGGATGGACGGATACAGAAAATCACATACTGCCCA  550

seq1  GCAGAAACCATAAATGCAGGTCTCTATGGGAATCAGAGCAGAAATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACCATAAATGCAGGTCTCTATGGGAATCAGAGCAGAAATCATCA  600

seq1  TAGAAATTTGCACCTGAATGTGATTCTCAGACTGCCATGGAATCTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTGCACCTGAATGTGATTCTCAGACTGCCATGGAATCTCTAGT  650

seq1  GGCTCAGTGTGTACAGGGATGCTCAGCCACTTCTGTGTGTTTTGCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGTGTACAGGGATGCTCAGCCACTTCTGTGTGTTTTGCTTTGA  700

seq1  GCAATCACCCTCAATTCTCTCAGGGAATATTTGGGAAATACTCTAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACCCTCAATTCTCTCAGGGAATATTTGGGAAATACTCTAGGACT  750

seq1  TCAACTAGGTAAAGAATGAAGTAACTTCTGAAATACACTGAAATAGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAGGTAAAGAATGAAGTAACTTCTGAAATACACTGAAATAGTCTG  800

seq1  TTCTTCCTGAAAAGGTCTGAACTGAGGGAAAACCATTTTTACCAGAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGAAAAGGTCTGAACTGAGGGAAAACCATTTTTACCAGAGCTT  850

seq1  ACCCTACACTTTTGTGTTTGTTTTGTTTCTGTCTTTTTTCCCAAACCTCA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCTACACTTTTGTG-TTGTTTTGTTTCTGTCTTTTTTCCCAAACCTCA  899

seq1  CTTACCTGTGGAAGGGAAATCCCCAGATTCG-CCCTCTT-AACATTGCAT  948
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CTTACCTGTGGAAGGGAAATCCCCAGATTCGCCCCTCTTAAACATTGCAT  949

seq1  ATCCCCAGTGGTATGAAGGCTAATGCTGAGAAACACT-GGTAAACTTCAC  997
      ||||||||||||||||| ||| ||||||||||||||| ||||||||||||
seq2  ATCCCCAGTGGTATGAA-GCT-ATGCTGAGAAACACTGGGTAAACTTCAC  997

seq1  AGCCCAGAG-ACATGGACTCAACTACTGTAGTAAAGAA-CATCCTACC-T  1044
      ||||||||| |||||||||  ||||||||||||||||| ||||||||| |
seq2  AGCCCAGAGAACATGGACTTCACTACTGTAGTAAAGAACCATCCTACCTT  1047

seq1  CCCAGCACAAAAATAAAACACAACATACTAAAAAT--GGCAGGATGAACA  1092
      | |||||||||||| ||||||| ||||||||||||  | |||||||| | 
seq2  CTCAGCACAAAAAT-AAACACACCATACTAAAAATTGGCCAGGATGATC-  1095

seq1  AAAGCAACACTAAAAGGCAGTTCAG-ATGACAAAAGAAGAAAGATCTTTT  1141
      ||| ||||||   || |||| || | ||||| || || ||| ||||||||
seq2  AAATCAACACCTGAAAGCAGGTCCGAATGACTAAGGAGGAAGGATCTTTT  1145

seq1  TTTTTTCATATTT  1154
      |||||  ||||||
seq2  TTTTTCAATATTT  1158


| Home | SequenceCutter | Blast | Download |