BAC Information

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BAC

Clone NameB6Ng01-189A21
Chromosome12 (Build37)
Map Location 71,846,268 - 71,941,280
singlet/doubletdoublet
Overlap geneFrmd6
Upstream geneCdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061
Downstream geneActr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A21.bB6Ng01-189A21.g
ACCGA013181GA013182
length9991,077
definitionB6Ng01-189A21.b B6Ng01-189A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,846,268 - 71,847,262)(71,940,207 - 71,941,280)
sequence
gaattcatcatgtccttctaaaataaagatatcataagttatatttaatc
ccacagaaatgcccccccttcaagcctagatgtaaaagagaaattttctg
agccaactcttatgtacaagaaactgtgttgatttagacatttaaaaaat
gaagtcctgggctggagatatggttcagtaggtaagaaagagcacttggt
gtttaggtatgataacctgagttcagatcctcagtacccactttaaaaag
ctaagtgtggcctcacacacctgcaatcccaacactagggtgaggggagg
gcagaaacatcatgataagtcaatggggtataccagttagccaattcggt
cagaaaccctgtctcaaggaaatgtggtggagtgtgatagaggaaaatac
tcaccatcctcctctggcactgttgtatacttgtgcatgcccgtgcacaa
acatacacacacacacacacacacacacacacacagagagagagagagag
agagagagagagagagagagagagagagacctagttaaaggtcatgctca
tggttttacattcaaatgtcatgagctttggaggagcagagtttgagcag
tggttggcctcattccagaagccagtgtggtagaaggacaaccagagcaa
gcgttgaaactcaaaaaagaatggccactatcattgttccattttggaag
tgaaaatgggtagtcaagacctaggaaacactacaagtaattttgtcaag
tcttgtctattaaacctaactttacattgcaaaagcatgctagaatatcc
catttgttaagactgtatgccagctaagtttcttgcaaaggaaaggaaat
aaggaacattcccctgaatccctcaggtgtagggcttaaccagatgagga
atcctcctagctttgtgaaagcttgcttctggatgagatgggtgcttcat
tacaggaaagcattgaatctctcctcttgtccaggaacccctaagaaaa
gaattctcttttcattggaagaaaaccagagcaatttccggttgtggtga
aggaatatacacaaacattcctctccatgggtctcatcacttcctaaaga
aatcagatggggaaaacactggcactcttcagttaccagcttggactcac
taaataaaggtgccacccatgtctcatgggggaggggcgctcacttatct
ttatttctctcatctcagaaagaacagtccttactatgaatgtctttgaa
ataatagattcatcaaaataagttactttgcaaattagctgtcttacatt
tacagcctaattttctttttgtctttcattcgatcttcaaaaagagattg
aatcaccaaacaaattctggagtcataaagtattaacactgctgcaatga
caacagcctaagaaatctctttggaaatttgtttttccttctttaaacat
tcaaaccccaccccctggttttgacagttacaggaattacatcttcatga
attttctcccaaagtctatgtttttatattctgattattttaaggtctgc
tgtaagatctcactgtatcctttttttcttttactgttttgttttgaaga
tgacagggtttctctgtgtagctctagctgtcctgagactcgctatgtag
accaggctggcctggaactcagagatcctcctgcccctgcctccaggtgc
tgggattaaaggtgttcatcagtaggtacaggctgaaacttgtgagttca
aggttaacctggcacacatagtgaattctaggccagccaggaaaacatag
tgagaccctgtctttaaaaaaaaaaaaaaagaaagaaaagaatagaaaag
aaatgaaagaaaagaaagaaaagaaaagagccgggcagtggtggcgcaca
gagtgagttctagggatggccagaactgcacagagaactcctgtcttcaa
aaaccaaaaaccaaaatcaaaaacctcgggaggcagaggcaaggtggatc
tttgagtttgagaccagctttgttcttacaggcgagtctaaggaatagct
aggcctaatacagaggaactctgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_71846268_71847262
seq2: B6Ng01-189A21.b_45_1043

seq1  GAATTCATCATGTCCTTCTAAAATAAAGATATCATAAGTTATATTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGTCCTTCTAAAATAAAGATATCATAAGTTATATTTAATC  50

seq1  CCACAGAAATGCCCCCCCTTCAAGCCTAGATGTAAAAGAGAAATTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAATGCCCCCCCTTCAAGCCTAGATGTAAAAGAGAAATTTTCTG  100

seq1  AGCCAACTCTTATGTACAAGAAACTGTGTTGATTTAGACATTTAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTCTTATGTACAAGAAACTGTGTTGATTTAGACATTTAAAAAAT  150

seq1  GAAGTCCTGGGCTGGAGATATGGTTCAGTAGGTAAGAAAGAGCACTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTGGGCTGGAGATATGGTTCAGTAGGTAAGAAAGAGCACTTGGT  200

seq1  GTTTAGGTATGATAACCTGAGTTCAGATCCTCAGTACCCACTTTAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTATGATAACCTGAGTTCAGATCCTCAGTACCCACTTTAAAAAG  250

seq1  CTAAGTGTGGCCTCACACACCTGCAATCCCAACACTAGGGTGAGGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTGGCCTCACACACCTGCAATCCCAACACTAGGGTGAGGGGAGG  300

seq1  GCAGAAACATCATGATAAGTCAATGGGGTATACCAGTTAGCCAATTCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACATCATGATAAGTCAATGGGGTATACCAGTTAGCCAATTCGGT  350

seq1  CAGAAACCCTGTCTCAAGGAAATGTGGTGGAGTGTGATAGAGGAAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCTGTCTCAAGGAAATGTGGTGGAGTGTGATAGAGGAAAATAC  400

seq1  TCACCATCCTCCTCTGGCACTGTTGTATACTTGTGCATGCCCGTGCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCCTCCTCTGGCACTGTTGTATACTTGTGCATGCCCGTGCACAA  450

seq1  ACATACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAG  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTAGTTAAAGGTCATGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTAGTTAAAGGTCATGCTCA  550

seq1  TGG-TTTACATTCAAATGTCATGAGCTTTGGAGGAGCAGAGTTTGAGCAG  599
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTACATTCAAATGTCATGAGCTTTGGAGGAGCAGAGTTTGAGCAG  600

seq1  TGGTTGGCCTCATTCCAGAAGCCAGTGTGGTAGAAGGACAACCAGAGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCCTCATTCCAGAAGCCAGTGTGGTAGAAGGACAACCAGAGCAA  650

seq1  GCGTTGAAACTC-AGAAAGAATGGCCACTATCATTGTTCCATTTTGGAAG  698
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  GCGTTGAAACTCAAAAAAGAATGGCCACTATCATTGTTCCATTTTGGAAG  700

seq1  TGAAAATGGGTAGTCAAGACCTAGGAAACACTACAAGTAAATTTTGTCAA  748
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAAAATGGGTAGTCAAGACCTAGGAAACACTACAAGT-AATTTTGTCAA  749

seq1  GTCTTGTCCATTAAACCTAACTTTACATTGCAAAAGCATGCTAGAATATC  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTATTAAACCTAACTTTACATTGCAAAAGCATGCTAGAATATC  799

seq1  CCA-TTGTTAAGACTGTATGCCAGGCTAAG-TTCTTGCAAAAGGAAAGGA  846
      ||| ||||||||||||||||||| |||||| ||||||| |||||||||||
seq2  CCATTTGTTAAGACTGTATGCCA-GCTAAGTTTCTTGC-AAAGGAAAGGA  847

seq1  AATAAGGAAACAATTCCCCTGAATCCCTCAGGTGTAGGGCTTAACCAGAT  896
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAA--CATTCCCCTGAATCCCTCAGGTGTAGGGCTTAACCAGAT  895

seq1  GAGGAATCCACC-AGCTTTGTGAAAGCCTGCTTCTGGATGAGATTGGTGC  945
      ||||||||| || |||||||||||||| |||||||||||||||| |||||
seq2  GAGGAATCCTCCTAGCTTTGTGAAAGCTTGCTTCTGGATGAGATGGGTGC  945

seq1  -TCATCACAGGAAAGCATTGAATCTC-CCTC-TGTCCAGGAACCCCT-AG  991
       |||| |||||||||||||||||||| |||| ||||||||||||||| ||
seq2  TTCATTACAGGAAAGCATTGAATCTCTCCTCTTGTCCAGGAACCCCTAAG  995

seq1  AAAA  995
      ||||
seq2  AAAA  999

seq1: chr12_71940207_71941280
seq2: B6Ng01-189A21.g_66_1142 (reverse)

seq1  AAGACAGAGTTTCTCTGT-GTAGCCCTGGCTA-TCCTAGAACTCTCCCTG  48
      ||||||||||| ||||||  ||| ||| |||| ||||   ||||  ||||
seq2  AAGACAGAGTTCCTCTGTATTAGGCCTAGCTATTCCTTAGACTC-GCCTG  49

seq1  TA--GACCAAGCTGGTCTCAAACTCAAAGATCCACC-TGCCTCTGCCTCC  95
      ||   || |||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGAACAAAGCTGGTCTCAAACTCAAAGATCCACCTTGCCTCTGCCTCC  99

seq1  CGAGGTTTTTTGTTTTGGTTTTTGGTTTTTGAAGACAGGGGTTCTCTGTG  145
      ||||||||||  ||||||||||||||||||||||||||| ||||||||||
seq2  CGAGGTTTTTGATTTTGGTTTTTGGTTTTTGAAGACAGGAGTTCTCTGTG  149

seq1  CAGTTCTGGCCAT-CCTAGAACTCACTCTGTGCGCCACCACTGCCCGGCT  194
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGCCATCCCTAGAACTCACTCTGTGCGCCACCACTGCCCGGCT  199

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  244
      ||||||||||| ||||||||| |||| |||||||||| ||||||||||| 
seq2  CTTTTCTTTTC-TTTCTTTTC-TTTCATTTCTTTTCTATTCTTTTCTTTC  247

seq1  CTTTTTTTTTTTTTTTAAGACAGGGTCTCACTATGTTTTCCTGGCTGGCC  294
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAAAGACAGGGTCTCACTATGTTTTCCTGGCTGGCC  297

seq1  TAGAATTCACTATGTGTGCCAGGTTAACCTTGAACTCACAAGTTTCAGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCACTATGTGTGCCAGGTTAACCTTGAACTCACAAGTTTCAGCC  347

seq1  TGTACCTACTGATGAACACCTTTAATCCCAGCACCTGGAGGCAGGGGCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTACTGATGAACACCTTTAATCCCAGCACCTGGAGGCAGGGGCAG  397

seq1  GAGGATCTCTGAGTTCCAGGCCAGCCTGGTCTACATAGCGAGTCTCAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTCTGAGTTCCAGGCCAGCCTGGTCTACATAGCGAGTCTCAGGA  447

seq1  CAGCTAGAGCTACACAGAGAAACCCTGTCATCTTCAAAACAAAACAGTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGCTACACAGAGAAACCCTGTCATCTTCAAAACAAAACAGTAA  497

seq1  AAGAAAAAAAGGATACAGTGAGATCTTACAGCAGACCTTAAAATAATCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGGATACAGTGAGATCTTACAGCAGACCTTAAAATAATCAG  547

seq1  AATATAAAAACATAGACTTTGGGAGAAAATTCATGAAGATGTAATTCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAACATAGACTTTGGGAGAAAATTCATGAAGATGTAATTCCTG  597

seq1  TAACTGTCAAAACCAGGGGGTGGGGTTTGAATGTTTAAAGAAGGAAAAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCAAAACCAGGGGGTGGGGTTTGAATGTTTAAAGAAGGAAAAAC  647

seq1  AAATTTCCAAAGAGATTTCTTAGGCTGTTGTCATTGCAGCAGTGTTAATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAAAGAGATTTCTTAGGCTGTTGTCATTGCAGCAGTGTTAATA  697

seq1  CTTTATGACTCCAGAATTTGTTTGGTGATTCAATCTCTTTTTGAAGATCG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACTCCAGAATTTGTTTGGTGATTCAATCTCTTTTTGAAGATCG  747

seq1  AATGAAAGACAAAAAGAAAATTAGGCTGTAAATGTAAGACAGCTAATTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGACAAAAAGAAAATTAGGCTGTAAATGTAAGACAGCTAATTTG  797

seq1  CAAAGTAACTTATTTTGATGAATCTATTATTTCAAAGACATTCATAGTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACTTATTTTGATGAATCTATTATTTCAAAGACATTCATAGTAA  847

seq1  GGACTGTTCTTTCTGAGATGAGAGAAATAAAGATAAGTGAGCGCCCCTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTCTTTCTGAGATGAGAGAAATAAAGATAAGTGAGCGCCCCTCC  897

seq1  CCCATGAGACATGGGTGGCACCTTTATTTAGTGAGTCCAAGCTGGTAACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGACATGGGTGGCACCTTTATTTAGTGAGTCCAAGCTGGTAACT  947

seq1  GAAGAGTGCCAGTGTTTTCCCCATCTGATTTCTTTAGGAAGTGATGAGAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCCAGTGTTTTCCCCATCTGATTTCTTTAGGAAGTGATGAGAC  997

seq1  CCATGGAGAGGAATGTTTGTGTATATTCCTTCACCACAACCGGAAATTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGAGGAATGTTTGTGTATATTCCTTCACCACAACCGGAAATTGC  1047

seq1  TCTGGTTTTCTTCCAATGAAAAGAGAATTC  1074
      ||||||||||||||||||||||||||||||
seq2  TCTGGTTTTCTTCCAATGAAAAGAGAATTC  1077