BAC Information

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BAC

Clone NameB6Ng01-189N18
Chromosome12 (Build37)
Map Location 53,873,076 - 53,971,036
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N18.bB6Ng01-189N18.g
ACCGA013767GA013768
length1,172395
definitionB6Ng01-189N18.b B6Ng01-189N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,969,867 - 53,971,036)(53,873,076 - 53,873,476)
sequence
gaattctgttcctttcaaaccatgggtggggtttcagaatacatacaaaa
gaagtggcaggatcgataaatgaggtctgagctagctcggacaacatctg
aacctagattcattcaatatttcattcatgattaatacactctgccccct
tgtgccctaaaccatgtgctcagcccactcttaattcactgtagacagaa
accattttgtgatggtctggtgaaaattcagatgtgtgcaagtgtactga
caggaaacagacataataaaattaaggacacaaaatgaaaagggcaactt
agcaggggatgctgggaacatgggtaagaaaagccctgtcgagagggtca
caaggcaaaacaacttccattatttatctgtaagttagactttagctact
tctgaagcaaagtgggatatgccagctgacttccagatagagagcacaac
taatgttttttaaggcggagggaacatgggggcaaagaacagaaaggtga
cagtcctggcactagaagcacgcccttggaattgtgaaagttgaaagaaa
ggtttggtagaggaattagacaccagggacatcagtagacataaggatat
agcgcttaaataatttctgcataccaaggaaaacatagaagatggtccag
aaaagatcacatcttcagaactgccttatgtctttgtgcaaataatccag
actacctagaaggcagaggcaaaggctgagagaaaccttaagtgtgggga
gatctaggctgaaaaggatcagctaaccagagagagcagtgatgacaaga
agaaacctacagaaaacctaggtgttgctggtgaaagaggaccccatgtg
tctgtgtttcttgcctgtctgtctgcttacagtgcatccgggaggagggc
tttcatgaagatcacacaaaggttcacaggccatctcccttcccaggctt
gggaagagacagctcagagtgatgtggcccagagggacctttttcccttc
ttcctccaataggtcactaatgtcagagcatcaatgacccttaggagctc
tcagtactaaaatgctcttggattcgttcactgattattgatttttattg
tcactttgatcagcagtttcttgaactggagctgaccatggcttcctgaa
cttgcaattggtgacatttcat
tggaggctctgcggaaggaaggactcccatctgccaggaccctacaactg
agcctgccgccaagtcagagaagtgttgggattcacactggaactggagg
ctgtctgaactgactcctctatggagtacaatgttataagaagtaaattt
caggaaaagagaggaagcagagggaacacagtcagagcagttggaagttg
atgtacgtgcgaaaattctggcaattctgactttagagttttggctatgg
tgttaataaaggacaggttgtgttttggttgatttattgttatttaaaaa
ttctccacaaatgatgtattcattgtatgcatgacagacacaaagccagg
gaaaggaaagagggttggctgccccgatgttgagttcccactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53969867_53971036
seq2: B6Ng01-189N18.b_49_1220 (reverse)

seq1  ATGAAATGTCA-CAATGCCAGTTTCAGGAAAGCACTGGTCAGCCTCAGTT  49
      ||||||||||| ||||  ||  |||||| ||||  ||||||||  |||||
seq2  ATGAAATGTCACCAATTGCAAGTTCAGG-AAGCCATGGTCAGCTCCAGTT  49

seq1  CAAGGAAACTGCTGATC-AAGTGGCCAATAAAATCAATTATCAGTGGACG  98
      ||| ||||||||||||| ||||| | |  ||||||||| ||||||| |||
seq2  CAA-GAAACTGCTGATCAAAGTGACAATAAAAATCAATAATCAGTGAACG  98

seq1  AATCCCAGGAGGCATTTTAGTACTGAGAGCTCCT-AGGGTCATTGATGGC  147
      ||||| ||   ||||||||||||||||||||||| |||||||||||| ||
seq2  AATCCAAG--AGCATTTTAGTACTGAGAGCTCCTAAGGGTCATTGAT-GC  145

seq1  TCTGACATTAGTGACCTATGGGAGGAAGAAGGG-AAAAGGTCCCTCTGGG  196
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TCTGACATTAGTGACCTATTGGAGGAAGAAGGGAAAAAGGTCCCTCTGGG  195

seq1  CCACATCACTCTGAGCTGT-TCTCTCCCAGCCTGGG-AGGGAGATGGCCT  244
      ||||||||||||||||||| |||  || |||||||| |||||||||||||
seq2  CCACATCACTCTGAGCTGTCTCTTCCCAAGCCTGGGAAGGGAGATGGCCT  245

seq1  GTG-ACCTTTGTGTGATCTTCATGGAAGCCCTCCTCCCGGATGCACTGTA  293
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGAACCTTTGTGTGATCTTCATGAAAGCCCTCCTCCCGGATGCACTGTA  295

seq1  AGCAGACAGACAGGCAAGAAACACAGACACATGGGGTCCTCTTTCACCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAGACAGGCAAGAAACACAGACACATGGGGTCCTCTTTCACCAG  345

seq1  CAACACCTAGGTTTTCTGTAGGTTTCTTCTTGTCATCACTGCTCTCTCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTAGGTTTTCTGTAGGTTTCTTCTTGTCATCACTGCTCTCTCTG  395

seq1  GTTAGCTGATCCTTTTCAGCCTAGATCTCCCCACACTTAAGGTTTCTCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGATCCTTTTCAGCCTAGATCTCCCCACACTTAAGGTTTCTCTC  445

seq1  AGCCTTTGCCTCTGCCTTCTAGGTAGTCTGGATTATTTGCACAAAGACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGCCTCTGCCTTCTAGGTAGTCTGGATTATTTGCACAAAGACAT  495

seq1  AAGGCAGTTCTGAAGATGTGATCTTTTCTGGACCATCTTCTATGTTTTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTTCTGAAGATGTGATCTTTTCTGGACCATCTTCTATGTTTTCC  545

seq1  TTGGTATGCAGAAATTATTTAAGCGCTATATCCTTATGTCTACTGATGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGCAGAAATTATTTAAGCGCTATATCCTTATGTCTACTGATGTC  595

seq1  CCTGGTGTCTAATTCCTCTACCAAACCTTTCTTTCAACTTTCACAATTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTCTAATTCCTCTACCAAACCTTTCTTTCAACTTTCACAATTCC  645

seq1  AAGGGCGTGCTTCTAGTGCCAGGACTGTCACCTTTCTGTTCTTTGCCCCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGTGCTTCTAGTGCCAGGACTGTCACCTTTCTGTTCTTTGCCCCC  695

seq1  ATGTTCCCTCCGCCTTAAAAAACATTAGTTGTGCTCTCTATCTGGAAGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCTCCGCCTTAAAAAACATTAGTTGTGCTCTCTATCTGGAAGTC  745

seq1  AGCTGGCATATCCCACTTTGCTTCAGAAGTAGCTAAAGTCTAACTTACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCATATCCCACTTTGCTTCAGAAGTAGCTAAAGTCTAACTTACAG  795

seq1  ATAAATAATGGAAGTTGTTTTGCCTTGTGACCCTCTCGACAGGGCTTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATGGAAGTTGTTTTGCCTTGTGACCCTCTCGACAGGGCTTTTC  845

seq1  TTACCCATGTTCCCAGCATCCCCTGCTAAGTTGCCCTTTTCATTTTGTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATGTTCCCAGCATCCCCTGCTAAGTTGCCCTTTTCATTTTGTGT  895

seq1  CCTTAATTTTATTATGTCTGTTTCCTGTCAGTACACTTGCACACATCTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTTATTATGTCTGTTTCCTGTCAGTACACTTGCACACATCTGA  945

seq1  ATTTTCACCAGACCATCACAAAATGGTTTCTGTCTACAGTGAATTAAGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACCAGACCATCACAAAATGGTTTCTGTCTACAGTGAATTAAGAG  995

seq1  TGGGCTGAGCACATGGTTTAGGGCACAAGGGGGCAGAGTGTATTAATCAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGAGCACATGGTTTAGGGCACAAGGGGGCAGAGTGTATTAATCAT  1045

seq1  GAATGAAATATTGAATGAATCTAGGTTCAGATGTTGTCCGAGCTAGCTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAATATTGAATGAATCTAGGTTCAGATGTTGTCCGAGCTAGCTCA  1095

seq1  GACCTCATTTATCGATCCTGCCACTTCTTTTGTATGTATTCTGAAACCCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATTTATCGATCCTGCCACTTCTTTTGTATGTATTCTGAAACCCC  1145

seq1  ACCCATGGTTTGAAAGGAACAGAATTC  1170
      |||||||||||||||||||||||||||
seq2  ACCCATGGTTTGAAAGGAACAGAATTC  1172

seq1: chr12_53873076_53873476
seq2: B6Ng01-189N18.g_67_467

seq1  GAATTCTGGAGGCTCTGCGGAAGGAAGGACTCCCATCTGCCAGGACCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGGCTCTGCGGAAGGAAGGACTCCCATCTGCCAGGACCCTA  50

seq1  CAACTGAGCCTGCCGCCAAGTCAGAGAAGTGTTGGGATTCACACTGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGCCTGCCGCCAAGTCAGAGAAGTGTTGGGATTCACACTGGAAC  100

seq1  TGGAGGCTGTCTGAACTGACTCCTCTATGGAGTACAATGTTATAAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGTCTGAACTGACTCCTCTATGGAGTACAATGTTATAAGAAGT  150

seq1  AAATTTCAGGAAAAGAGAGGAAGCAGAGGGAACACAGTCAGAGCAGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGGAAAAGAGAGGAAGCAGAGGGAACACAGTCAGAGCAGTTGG  200

seq1  AAGTTGATGTACGTGCGAAAATTCTGGCAATTCTGACTTTAGAGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATGTACGTGCGAAAATTCTGGCAATTCTGACTTTAGAGTTTTGG  250

seq1  CTATGGTGTTAATAAAGGACAGGTTGTGTTTTGGTTGATTTATTGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGTTAATAAAGGACAGGTTGTGTTTTGGTTGATTTATTGTTATT  300

seq1  TAAAAATTCTCCACAAATGATGTATTCATTGTATGCATGACAGACACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTCTCCACAAATGATGTATTCATTGTATGCATGACAGACACAAA  350

seq1  GCCAGGGAAAGGAAAGAGGGTTGGCTGCCCCGATGTTGAGTTCCCACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAAAGGAAAGAGGGTTGGCTGCCCCGATGTTGAGTTCCCACTCC  400

seq1  C  401
      |
seq2  C  401