BAC Information

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BAC

Clone NameB6Ng01-190A03
Chromosome12 (Build37)
Map Location 11,239,594 - 11,240,696
singlet/doubletsinglet
Overlap genenone
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
Downstream gene5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190A03.bB6Ng01-190A03.g
ACCGA013879GA013880
length1,1081,181
definitionB6Ng01-190A03.b B6Ng01-190A03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatctcctacatttatgtatttattttttaaagatttatttat
tttatgtatgtgagtacactgtcactgttctcagacacaccagaagaggg
cattggacccattatagatggttgtgaatcatcatgtgattgctgggaat
tgaacacaggacctctggaagagcagtcggtgctcttatccactgagcca
tctctccagccctgagtccctgcatttatgtttgtacactcagttcttat
ctcagacctagacatctttcctgactttttagtataattctacttctatc
tatagttctattaccaattcctgacacaattgtgcagttgtttgcttgtg
gctttttattttctgtttcccaagctagaatgcaagcaaaagggaagact
tttaactttgtgggttcgaaaactagaaaactgcttggtacaataactat
ctatgcatggcctctccctagtccactggaacctaaatacagcaatatac
attctttgcagaatgtagcctaggaaccctagcatagctcaaatggccgt
ggcagtcgctggtttcagcatgaggcattctctgttgtaaagctcagttt
tggccactcaaaaatacttgcttttccctgagcagagctcacttcctttg
ctcatgaaatgcatactttccctgtctcttgagaattcgtacaaatggaa
taacttatcatcccaagtggcttctattctttgtatttccaagattatta
cccatacctccatgaaatacaatatttgtcttctaaaaaattttccattt
tctctctgatgccaaaattaattttgatttttggattcctcagaaccttg
ctcagaagtttataccttaccccctctctattttaccaactagctaactc
atgggaaaactcggtgtaaatagcatctctggggccttactatttcctta
tatgctttttgaaagattacctgcccatgttttgggggttgtttgcattt
ttcctacaatatgccaagccatcagtatttctgaatccttggcatccata
cagggtattatgctaagaaaggcatcactgagcagacgttgggatctgaa
tttggtgg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gagattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacgggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgaaggctatgccggggcctagcaa
acacagaagtgggatgctcacagtcagctaatggatggatcacagggcct
cccaatggaggagctagaagaaagtagccaagagctaaagggatctgcaa
ccctataggtgaacacactatgactaaccagtaccctggagcttctgact
ctagctgcatattgtatcaaaagatgactagttctcatcactggaaggag
agccatggactgcaaactttaatgccagtcaggtactccaggtcaaaaag
ggaatgtgtctggttgatggtattgtccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11239594_11240696
seq2: B6Ng01-190A03.b_45_1152 (reverse)

seq1  CCACCAA--TCAGTATCCCAACATCTGCTCACTGAATGCTTTCTTTGC-T  47
      |||||||  |||| |||||||| |||||||| |||   ||||||| || |
seq2  CCACCAAATTCAG-ATCCCAACGTCTGCTCAGTGATGCCTTTCTTAGCAT  49

seq1  AAT-CCCTGTATGGATGCCAAGGATTCAGAAATACTGGATGCTTGGCATA  96
      ||| |||||||||||||||||||||||||||||||||   ||||||||||
seq2  AATACCCTGTATGGATGCCAAGGATTCAGAAATACTGATGGCTTGGCATA  99

seq1  TTGTAGGAAAAATGCAAACAACCCCCAAAACATTGGCAGGTAATCTTTC-  145
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  TTGTAGGAAAAATGCAAACAACCCCCAAAACATGGGCAGGTAATCTTTCA  149

seq1  AAAAGCATATAAGG-AATAGTAAGGCCCCAGAGATGCTATTTACACCGAG  194
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAGCATATAAGGAAATAGTAAGGCCCCAGAGATGCTATTTACACCGAG  199

seq1  TTTTCCCATGAGTTAGCTAGTTGGTAAAATAGAGAGGGGGTAAGGTATAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGAGTTAGCTAGTTGGTAAAATAGAGAGGGGGTAAGGTATAA  249

seq1  ACTTCTGAGCAAGGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGCAAGGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGCA  299

seq1  TCAGAGAGAAAATGGAAAATTTTTTAGAAGACAAATATTGTATTTCATGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAAAATGGAAAATTTTTTAGAAGACAAATATTGTATTTCATGG  349

seq1  AGGTATGGGTAATAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGGTAATAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGAT  399

seq1  GATAAGTTATTCCATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTATTCCATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGCA  449

seq1  TTTCATGAGCAAAGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGCAAAGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTTT  499

seq1  GAGTGGCCAAAACTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCAAAACTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACCA  549

seq1  GCGACTGCCACGGCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTGCCACGGCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTCT  599

seq1  GCAAAGAATGTATATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATGTATATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGGC  649

seq1  CATGCATAGATAGTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGATAGTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCAC  699

seq1  AAAGTTAAAAGTCTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAAGTCTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAAA  749

seq1  ATAAAAAGCCACAAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCCACAAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAAT  799

seq1  AGAACTATAGATAGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAGATAGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTCT  849

seq1  AGGTCTGAGATAAGAACTGAGTGTACAAACATAAATGCAGGGACTCAGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAGATAAGAACTGAGTGTACAAACATAAATGCAGGGACTCAGGG  899

seq1  CTGGAGAGATGGCTCAGTGGATAAGAGCACCGACTGCTCTTCCAGAGGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGCTCAGTGGATAAGAGCACCGACTGCTCTTCCAGAGGTC  949

seq1  CTGTGTTCAATTCCCAGCAATCACATGATGATTCACAACCATCTATAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCAATTCCCAGCAATCACATGATGATTCACAACCATCTATAATG  999

seq1  GGTCCAATGCCCTCTTCTGGTGTGTCTGAGAACAGTGACAGTGTACTCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATGCCCTCTTCTGGTGTGTCTGAGAACAGTGACAGTGTACTCAC  1049

seq1  ATACATAAAATAAATAAATCTTTAAAAAATAAATACATAAATGTAGGAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAATAAATAAATCTTTAAAAAATAAATACATAAATGTAGGAGA  1099

seq1  TCTGAATTC  1103
      |||||||||
seq2  TCTGAATTC  1108