BAC Information

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BAC

Clone NameB6Ng01-191H23
Chromosome12 (Build37)
Map Location 102,202,881 - 102,314,117
singlet/doubletdoublet
Overlap gene0610010D24Rik, LOC100040184, Smek1
Upstream geneKcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68
Downstream gene4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191H23.bB6Ng01-191H23.g
ACCGA014973GA014974
length1,151734
definitionB6Ng01-191H23.b B6Ng01-191H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,202,881 - 102,203,913)(102,313,393 - 102,314,117)
sequence
gaattcaaggtcagtgtgggcagaaaagcaaaacccaatctcaaaacaca
cacacacacacacacacacacacacacacacacacacacacacacacacg
agagacagatagcctggggcataaaaccattcgctatataaggttgacaa
ctcgagttgaatccctagaatccacatcaaaaactagactcagccaggca
gtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcag
atttctgagttcaaggccagcctggtctacagagttgagttccaggacag
ccaaggctatcagagaaaccctgccttaaaaacaaacaaacaaacaaaca
aacaaacaaaacaaaacaaaacaaaactagacgcaagggggtggagaggt
agctcagtggttaacactgctttctgcttttgcaggacccaagtttagtt
cccagcacctatgtatcgagcagatcacaaccacctttaacctcagtctc
tgtgggcatctgcacacacatgcacacagtccctgccaacatacacacca
ctgtacatatatgcacatggttcccacctacatacacgtattaaaagtaa
ggttaatcttttaaaaaatttgtgaaagcctgatgtgatggcacacatct
gatgtcacagcatccctatagtgaggtgggaagcagcctggcgaacatag
ccatataacccagaaaccagaaagacacacacacacacacacacacacac
acacacacacacacacacacacacacacacagttctcattccatgccagg
cacacctccaagctagagtcatttgggaagacagactctcaagtgagaaa
atgcctctgagtgactggcaagaaggcgagggcagcgtgcattttcttag
agattgatatgggagggttggggcccccattgtagggtgggtgctatgcc
tgagctgagcaagccaggaaaggagcacctcttcccaccaccctctccaa
tcagctcctgcatctaggttctgccccacgaatgaactacagcctgcagt
atgaaaaataaaccccctcccctcccaagttccttggtcatgggtgcctt
atcacagcagtagaagccctcagaatagacattgaagtacgaaaaagaca
a
gaattcccataacattggtttcctttttgggtttttggggggggggagtc
cttcttttctttttttttctttttgtttttttcgagacaaggtttctctg
tgtagccctggctgtcctggaaaactctgtagaccgcctgcctctgcttc
ccaagtgctgggattaaaggtgtatgccatcactgcctggcaacactggc
ttcctaaccacaagttttaatgttttgaatctttgaatagttttttcaat
gagggttttcccttccacacttaacaagaaatctaggtgggggtgggggg
cacgtggtgttttgttttgcagttccagtttttttgaggttaccagggat
tgaacttagggcttgcaaagtacagacaagcacagtattgttgagctata
caacaatagccttctattttgcttgtcttcccccagttcaagatttattt
tagttatgtgcaaattaattctagtgccataagaatcatatccactggag
ctggaagtacaagtagttgtgaaatcttggggtgtgtatgctggaaatca
actctggtcctctgtagaggcagtgcatgctctttaacttgctgagccaa
ctccccagcccatttttacttttctatttcaagatgagttttcttttact
tactctcatgggcctttgaatctgccctctttctgcttcggcctccaact
agcctgttgtcaccagccttggagtttgattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_102202881_102203913
seq2: B6Ng01-191H23.b_144_1192

seq1  AGACAGATAGCCTGGGGCATAAAACCATTCGCTATATAAGGTTGACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATAGCCTGGGGCATAAAACCATTCGCTATATAAGGTTGACAACT  50

seq1  CGAGTTGAATCCCTAGAATCCACATCAAAAACTAGACTCAGCCAGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTGAATCCCTAGAATCCACATCAAAAACTAGACTCAGCCAGGCAGT  100

seq1  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  150

seq1  TTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTGAGTTCCAGGACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTGAGTTCCAGGACAGCC  200

seq1  AAGGCTATCAGAGAAACCCTGCCTTAAAAACAAACAAACAAACAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATCAGAGAAACCCTGCCTTAAAAACAAACAAACAAACAAACAAA  250

seq1  CAAACAAAACAAAACAAAACAAAACTAGACGCAAGGGGGTGGAGAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAAAACAAAACAAAACTAGACGCAAGGGGGTGGAGAGGTAG  300

seq1  CTCAGTGGTTAACACTGCTTTCTGCTTTTGCAGGACCCAAGTTTAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAACACTGCTTTCTGCTTTTGCAGGACCCAAGTTTAGTTCC  350

seq1  CAGCACCTATGTATCGAGCAGATCACAACCACCTTTAACCTCAGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTATGTATCGAGCAGATCACAACCACCTTTAACCTCAGTCTCTG  400

seq1  TGGGCATCTGCACACACATGCACACAGTCCCTGCCAACATACACACCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTGCACACACATGCACACAGTCCCTGCCAACATACACACCACT  450

seq1  GTACATATATGCACATGGTTCCCACCTACATACACGTATTAAAAGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATGCACATGGTTCCCACCTACATACACGTATTAAAAGTAAGG  500

seq1  TTAATCTTTTAAAAAATTTGTGAAAGCCTGATGTGATGGCACACATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTTAAAAAATTTGTGAAAGCCTGATGTGATGGCACACATCTGA  550

seq1  TGTCACAGCATCCCTATAGTGAGGTGGGAAGCAGCCTGGCGAACATAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGCATCCCTATAGTGAGGTGGGAAGCAGCCTGGCGAACATAGCC  600

seq1  ATATAACCCAGAAACCAGAAAGACACACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCCAGAAACCAGAAAGACACACACACACACACACACACACACAC  650

seq1  ACACACACACACACACACACACACACACAGTTCTCATTCCATGCCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAGTTCTCATTCCATGCCAGGCA  700

seq1  CACCTCCAAGCTAGAGTCATTTGGGAAGACAGACTCTCAAGTGAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAAGCTAGAGTCATTTGGGAAGACAGACTCTCAAGTGAGAAAAT  750

seq1  GCCTCTGAGTGACTGGCAAGAAGGCGAGGGCAGCGTGCATTTTCTTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAGTGACTGGCAAGAAGGCGAGGGCAGCGTGCATTTTCTTAGAG  800

seq1  ATTGATATGGGAGGGTTGGG--CCCCATTGTAGG--TGGTGCTATGCCTG  846
      ||||||||||||||||||||  ||||||||||||   |||||||||||||
seq2  ATTGATATGGGAGGGTTGGGGCCCCCATTGTAGGGTGGGTGCTATGCCTG  850

seq1  AGCTGAGCAAGCCAGG-AAGGAGCA-CTC-TCCCA-CAGCCTCTCC-ATC  891
      |||||||||||||||| |||||||| ||| ||||| || ||||||| |||
seq2  AGCTGAGCAAGCCAGGAAAGGAGCACCTCTTCCCACCACCCTCTCCAATC  900

seq1  AGCTCCTGCATCTAGGTTCTG-CCCACG-ATGAACTACAAGCTGCAGTAT  939
      ||||||||||||||||||||| |||||| ||||||||||  |||||||||
seq2  AGCTCCTGCATCTAGGTTCTGCCCCACGAATGAACTACAGCCTGCAGTAT  950

seq1  G--AAATAAA--CCCTTCCCTCCCAAAGTTTCTTTTGGTCAT-GGTG-CT  983
      |  |||||||  |||| ||||||| ||||| |  |||||||| |||| ||
seq2  GAAAAATAAACCCCCTCCCCTCCC-AAGTTCC--TTGGTCATGGGTGCCT  997

seq1  TATCACAGCAGTAGAAACCCTCAG-ATAGACA-TGAAGTAGGAGAAAGAC  1031
      |||||||||||||||| ||||||| ||||||| ||||||| || ||||||
seq2  TATCACAGCAGTAGAAGCCCTCAGAATAGACATTGAAGTACGAAAAAGAC  1047

seq1  AA  1033
      ||
seq2  AA  1049

seq1: chr12_102313393_102314117
seq2: B6Ng01-191H23.g_64_797 (reverse)

seq1  AAAAATCAAA--CCCAGGCTGGTGACAACAGGCTAGTTGGAGGCCG-AGC  47
      ||||||||||  || ||||||||||||||||||||||||||||||| |||
seq2  AAAAATCAAACTCCAAGGCTGGTGACAACAGGCTAGTTGGAGGCCGAAGC  50

seq1  AGAAAGAGGGCAGATTC-AAGGCCCATGAGAGTAAGTAAAAG-AAACTCA  95
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  AGAAAGAGGGCAGATTCAAAGGCCCATGAGAGTAAGTAAAAGAAAACTCA  100

seq1  TCTTGAAATAG-AAAGTAAAAATGGGCTGGGGAGTTGGCTCAGC-AGTT-  142
      ||||||||||| |||||||||||||||||||||||||||||||| |||| 
seq2  TCTTGAAATAGAAAAGTAAAAATGGGCTGGGGAGTTGGCTCAGCAAGTTA  150

seq1  AAGAGCATGCACTGCCTCTACAGAGGACCAGAGTTGATTTCCAGCATACA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATGCACTGCCTCTACAGAGGACCAGAGTTGATTTCCAGCATACA  200

seq1  CACCCCAAGA-TTCACAACTACTTGTACTTCCAGCTCCAGTGGATATGAT  241
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAAGATTTCACAACTACTTGTACTTCCAGCTCCAGTGGATATGAT  250

seq1  TCTTATGGCACTAGAATTAATTTGCACATAACTAAAATAAATCTTGAACT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGCACTAGAATTAATTTGCACATAACTAAAATAAATCTTGAACT  300

seq1  GGGGGAAGACAAGCAAAATAGAAGGCTATTGTTGTATAGCTCAACAATAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGACAAGCAAAATAGAAGGCTATTGTTGTATAGCTCAACAATAC  350

seq1  TGTGCTTGTCTGTACTTTGCAAGCCCTAAGTTCAATCCCTGGTAACCTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTCTGTACTTTGCAAGCCCTAAGTTCAATCCCTGGTAACCTCA  400

seq1  AAAAAACTGGAACTGCAAAACAAAACACCACGTGCCCCCCACCCCCACCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGGAACTGCAAAACAAAACACCACGTGCCCCCCACCCCCACCT  450

seq1  AGATTTCTTGTTAAGTGTGGAAGGGAAAACCCTCATTGAAAAAACTATTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTGTTAAGTGTGGAAGGGAAAACCCTCATTGAAAAAACTATTC  500

seq1  AAAGATTCAAAACATTAAAACTTGTGGTTAGGAAGCCAGTGTTGCCAGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCAAAACATTAAAACTTGTGGTTAGGAAGCCAGTGTTGCCAGGC  550

seq1  AGTGATGGCATACACCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCATACACCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCG  600

seq1  GTCTACAGAGTTTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTTTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCT  650

seq1  CGAAAAAAACAAAAAGAAAAAAAAAGAAAAGAAGGACTCCCCCCCCCCAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAACAAAAAGAAAAAAAAAGAAAAGAAGGACTCCCCCCCCCCAA  700

seq1  AAACCCAAAAAGGAAACCAATGTTATGGGAATTC  725
      ||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAAAGGAAACCAATGTTATGGGAATTC  734