BAC Information

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BAC

Clone NameB6Ng01-191M16
Chromosome12 (Build37)
Map Location 98,936,828 - 99,038,232
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191M16.bB6Ng01-191M16.g
ACCGA015197GA015198
length1,1241,150
definitionB6Ng01-191M16.b B6Ng01-191M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,936,828 - 98,937,954)(99,037,089 - 99,038,232)
sequence
gaattcattatacttttccttttaaaataaaatcatattgtcaagtttta
attaagtttcgttcgttttaaatctccttaaacttctctctctctctttc
tctctctctctttcacatacacacacacacacacacacacacagagagag
agagaaatatttggctagctgaaatgcattttcctaactgaattgtagat
gtgcccacatacaagttaagactttttaaaatttaaccttgctgataaaa
atggccaaagtaattcaatacacacatgcaaatgtgatgggccaattgac
attcaaatttgtattattattttatcatagataacttacatggtttcaaa
gtaaatcactcagatttaaaaataactaaaatgtatgcagaggcatgagt
ctctacagtgtatatagaagttctaagtaattccaaatatgccagaagag
atggtttataagggttgctaacttggcaggttccagaagcaccttgaaga
ccaatttctggtcttcagtctccagtgatgaggattttagattggattaa
ttgaaataagttgacccagtctaaagatggcgctctaatgtaggttgaag
tcctgaactgagttagttgcaaaggcgtgctaagtaccaacactcttctc
tctgtgtggatgcagtgtgagcagctgccttgtccacctgcccaatgcct
tacctgccataagagatgataaccctagactgtggctaaaatcagatctt
cccttgttaaatcactttgttcatgtattttatcacagccacaagaaaat
ttactgagtctcagaataaattgacactacttctgggttggagagattac
ttagtaggtaaaggtgcttgctgtagaaacacgaagtcttgagctatatc
ctgggcacagacataaatctgtacactgtggcaagtctatgatgccagcc
tgtattcctatggcaaagtggaaagtggagacaaaaaaacccctcgaaag
attgtatgccagctacattagcattggctgcaaggaagaacagaatcctg
tcttaagaacaatgaagcagaacttgacttccaagttgcgtcctgcttct
cacttgtcttgcagaacatgaaaa

gaattcatttgaaaaaggcaacaaagatgctccaaatatgcatgcgcatg
tgcgcgcgcgcgtgcgagagagagagaatctgtggcaacgttacattaaa
aatttaggaatttggaataagttgctgacaaaagatttagagtaagaatt
tgcctgtagaaaaatgatttaacataagatattcagaaaatgagaagaaa
atttgctttattttaaaatgtgattatacacgtatattttaagaaaaacc
ttttcctcaaatataagagaaatacactgttcttcaaaaggcaggaagtg
tggagcattgattttcttttgtttgggatttccttccttagagaaatctg
cctggaagcaaaccactgtgctcttggatttttctctattgataaaaaag
caaatcatatttcttggtgaatgaaaaagaaagtgtttcaagtatacggc
taatatgaatcttgaatccaaattgctttaggcattcacaagaactggtg
gatttgtcttgctaaaaaagagcatggagattctatgaatcaacctacac
actatttaagtgaagaagccagaacgattaaatgacttaatccatgatca
tgtggcttgttgttggactttaaggctgaggtgaagggttagattttggc
ttcttaaatgctaattattgaattgtttaatgcagagctgagctgaatct
cctggctcctggtggctcaataatccctcttattacattataacccactc
ttcccactcacacatttcataagaagagaacaatgagaaaggcaatacta
aacacatgaaagcctcccatattttgttcagaatataaatctagtgaaaa
caggaaaaaaaaaaaaaagaagtgaagtttaagggaaacattctcaaatc
caagtagttccttgcttaggaatccatgggtcttaaagcagttccacttt
aagcttatgaatggtttccctgaccattcccagaatttatgaagttcttg
attacctctttgaggccaaggatggaggtttttattgatcacttagggta
atgagatctttacaagaagttatttattacacttttaggcatgacatttt
aatgtaagttaaagttaggtacaatcaagtatttacatgaatttcatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98936828_98937954
seq2: B6Ng01-191M16.b_52_1175

seq1  GAATTCATTATACTTTTCCTTTTAAAATAAAATCATATTGTCAAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATACTTTTCCTTTTAAAATAAAATCATATTGTCAAGTTTTA  50

seq1  ATTAAGTTTCGTTCGTTTTAAATCTCCTTAAACTTCTCTCTCTCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTCGTTCGTTTTAAATCTCCTTAAACTTCTCTCTCTCTCTTTC  100

seq1  TCTCTCTCTCTTTCACATACACACACACACACACACACACACAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTCACATACACACACACACACACACACACACAGAGAGAG  150

seq1  AGAGAAATATTTGGCTAGCTGAAATGCATTTTCCTAACTGAATTGTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATATTTGGCTAGCTGAAATGCATTTTCCTAACTGAATTGTAGAT  200

seq1  GTGCCCACATACAAGTTAAGACTTTTTAAAATTTAACCTTGCTGATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACATACAAGTTAAGACTTTTTAAAATTTAACCTTGCTGATAAAA  250

seq1  ATGGCCAAAGTAATTCAATACACACATGCAAATGTGATGGGCCAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAAGTAATTCAATACACACATGCAAATGTGATGGGCCAATTGAC  300

seq1  ATTCAAATTTGTATTATTATTTTATCATAGATAACTTACATGGTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTTGTATTATTATTTTATCATAGATAACTTACATGGTTTCAAA  350

seq1  GTAAATCACTCAGATTTAAAAATAACTAAAATGTATGCAGAGGCATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCACTCAGATTTAAAAATAACTAAAATGTATGCAGAGGCATGAGT  400

seq1  CTCTACAGTGTATATAGAAGTTCTAAGTAATTCCAAATATGCCAGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGTGTATATAGAAGTTCTAAGTAATTCCAAATATGCCAGAAGAG  450

seq1  ATGGTTTATAAGGGTTGCTAACTTGGCAGGTTCCAGAAGCACCTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATAAGGGTTGCTAACTTGGCAGGTTCCAGAAGCACCTTGAAGA  500

seq1  CCAATTTCTGGTCTTCAGTCTCCAGTGATGAGGATTTTAGATTGGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCTGGTCTTCAGTCTCCAGTGATGAGGATTTTAGATTGGATTAA  550

seq1  TTGAAATAAGTTGACCCAGTCTAAAGATGGCGCTCTAATGTAGGTTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAGTTGACCCAGTCTAAAGATGGCGCTCTAATGTAGGTTGAAG  600

seq1  TCCTGAACTGAGTTAGTTGCAAAGGCGTGCTAAGTACCAACACTCTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACTGAGTTAGTTGCAAAGGCGTGCTAAGTACCAACACTCTTCTC  650

seq1  TCTGTGTGGATGCAGTGTGAGCAGCTGCCTTGTCCACCTGCCCAATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGATGCAGTGTGAGCAGCTGCCTTGTCCACCTGCCCAATGCCT  700

seq1  TACCTGCCATAAGAGATGATAACCCTAGACTGTGGCTAAAATCAGATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCATAAGAGATGATAACCCTAGACTGTGGCTAAAATCAGATCTT  750

seq1  CCCTTGTTAAATCACTTTGTTCATGTATTTTATCACAGCCACAAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTAAATCACTTTGTTCATGTATTTTATCACAGCCACAAGAAAAT  800

seq1  TTACTGAGTCTCAGAATAAATTGACACTACTTCTGGGTTGGAGAGATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGTCTCAGAATAAATTGACACTACTTCTGGGTTGGAGAGATTAC  850

seq1  TTAGTAGGTAAAGGTGCTTGCTGTAGAAACACGAAGTCTTGAGCTATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGTAAAGGTGCTTGCTGTAGAAACACGAAGTCTTGAGCTATATC  900

seq1  CTGGGCACAGACATAAATCTGTACACTGTGGCAAGTCTATGATGCCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACAGACATAAATCTGTACACTGTGGCAAGTCTATGATGCCAGCC  950

seq1  TGTATTCCTATGGCAAAGTGGAAAGTGGAGACAAAAAAACCCCTCGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCTATGGCAAAGTGGAAAGTGGAGACAAAAAAACCCCTCGAAAG  1000

seq1  ATTGTATGCCAGCTACATTAGCATTGGCTGCAGGGAAGAACAG-ATCCTG  1049
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ATTGTATGCCAGCTACATTAGCATTGGCTGCAAGGAAGAACAGAATCCTG  1050

seq1  TC-TAAGACAAATGGAAGGCAGACACTGACTCCCAAGGTTGCCTTCTGGC  1098
      || |||||  ||||  | |||||   ||||| |||| ||||| | |||  
seq2  TCTTAAGAACAATG--AAGCAGAACTTGACTTCCAA-GTTGCGTCCTG--  1095

seq1  TTTCTCACTTGTCCTGCAGAACATGAAAA  1127
       |||||||||||| |||||||||||||||
seq2  CTTCTCACTTGTCTTGCAGAACATGAAAA  1124


seq1: chr12_99037089_99038232
seq2: B6Ng01-191M16.g_68_1217 (reverse)

seq1  GTGATGAAATACCATGGTATAATACTTGATTGTACTTACTTTAAAACTAC  50
      ||||||||||  ||| ||| ||||||||||||||| ||  || ||  |||
seq2  GTGATGAAAT-TCAT-GTA-AATACTTGATTGTACCTAACTTTAACTTAC  47

seq1  ATAAAAAATGTCATG-CTAAAAGTTGTATAAATAAC-TCTTGTAAAGATC  98
      ||  ||||||||||| ||||||||   ||||||||| |||||||||||||
seq2  AT-TAAAATGTCATGCCTAAAAGTGTAATAAATAACTTCTTGTAAAGATC  96

seq1  TCAT--ACCTTAGTGATC-ATAAAAACCTCCATCCTTGGCCTCAAAGA-G  144
      ||||   ||| ||||||| ||||||||||||||||||||||||||||| |
seq2  TCATTACCCTAAGTGATCAATAAAAACCTCCATCCTTGGCCTCAAAGAGG  146

seq1  TAATC-AGAGCTTCATAAATTCTTGGAAT-GTCAGGGAAAACATTCATAA  192
      ||||| ||| ||||||||||||| ||||| |||||||||| |||||||||
seq2  TAATCAAGAACTTCATAAATTCTGGGAATGGTCAGGGAAACCATTCATAA  196

seq1  GCTTAAAGT-GAACTGCTTTAAGACCCATGGATTCCTAAGCAAGGAACTA  241
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGTGGAACTGCTTTAAGACCCATGGATTCCTAAGCAAGGAACTA  246

seq1  CTTGGATTTGAG-ATGTTTCCCTTAAACTTCACTTC-TTTTTTTTTTTTT  289
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  CTTGGATTTGAGAATGTTTCCCTTAAACTTCACTTCTTTTTTTTTTTTTT  296

seq1  CCTGTTTTCACTAGATTTTATATTCTGAACAAAATATGGGAGGCTTTCAT  339
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCACTAGA-TTTATATTCTGAACAAAATATGGGAGGCTTTCAT  345

seq1  GTGTTTAGTATTGCCTTTCTCATTGTTCTCTTCTTATGAAATGTGTGAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGTATTGCCTTTCTCATTGTTCTCTTCTTATGAAATGTGTGAGT  395

seq1  GGGAAGAGTGGGTTATAATGTAATAAGAGGGATTATTGAGCCACCAGGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTGGGTTATAATGTAATAAGAGGGATTATTGAGCCACCAGGAG  445

seq1  CCAGGAGATTCAGCTCAGCTCTGCATTAAACAATTCAATAATTAGCATTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGATTCAGCTCAGCTCTGCATTAAACAATTCAATAATTAGCATTT  495

seq1  AAGAAGCCAAAATCTAACCCTTCACCTCAGCCTTAAAGTCCAACAACAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAAAATCTAACCCTTCACCTCAGCCTTAAAGTCCAACAACAAG  545

seq1  CCACATGATCATGGATTAAGTCATTTAATCGTTCTGGCTTCTTCACTTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGATCATGGATTAAGTCATTTAATCGTTCTGGCTTCTTCACTTAA  595

seq1  ATAGTGTGTAGGTTGATTCATAGAATCTCCATGCTCTTTTTTAGCAAGAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTAGGTTGATTCATAGAATCTCCATGCTCTTTTTTAGCAAGAC  645

seq1  AAATCCACCAGTTCTTGTGAATGCCTAAAGCAATTTGGATTCAAGATTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCAGTTCTTGTGAATGCCTAAAGCAATTTGGATTCAAGATTCA  695

seq1  TATTAGCCGTATACTTGAAACACTTTCTTTTTCATTCACCAAGAAATATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCGTATACTTGAAACACTTTCTTTTTCATTCACCAAGAAATATG  745

seq1  ATTTGCTTTTTTATCAATAGAGAAAAATCCAAGAGCACAGTGGTTTGCTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTTTTATCAATAGAGAAAAATCCAAGAGCACAGTGGTTTGCTT  795

seq1  CCAGGCAGATTTCTCTAAGGAAGGAAATCCCAAACAAAAGAAAATCAATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGATTTCTCTAAGGAAGGAAATCCCAAACAAAAGAAAATCAATG  845

seq1  CTCCACACTTCCTGCCTTTTGAAGAACAGTGTATTTCTCTTATATTTGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACTTCCTGCCTTTTGAAGAACAGTGTATTTCTCTTATATTTGAG  895

seq1  GAAAAGGTTTTTCTTAAAATATACGTGTATAATCACATTTTAAAATAAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTTTTCTTAAAATATACGTGTATAATCACATTTTAAAATAAAG  945

seq1  CAAATTTTCTTCTCATTTTCTGAATATCTTATGTTAAATCATTTTTCTAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTCTTCTCATTTTCTGAATATCTTATGTTAAATCATTTTTCTAC  995

seq1  AGGCAAATTCTTACTCTAAATCTTTTGTCAGCAACTTATTCCAAATTCCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATTCTTACTCTAAATCTTTTGTCAGCAACTTATTCCAAATTCCT  1045

seq1  AAATTTTTAATGTAACGTTGCCACAGATTCTCTCTCTCTCGCACGCGCGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAATGTAACGTTGCCACAGATTCTCTCTCTCTCGCACGCGCGC  1095

seq1  GCGCACATGCGCATGCATATTTGGAGCATCTTTGTTGCCTTTTTCAAATG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACATGCGCATGCATATTTGGAGCATCTTTGTTGCCTTTTTCAAATG  1145

seq1  AATTC  1144
      |||||
seq2  AATTC  1150


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