BAC Information

Click to search

BAC

Clone NameB6Ng01-192D03
Chromosome12 (Build37)
Map Location 38,022,133 - 38,023,269
singlet/doubletsinglet
Overlap geneA530016O06Rik
Upstream geneSostdc1, 4930579E17Rik, LOC638858, Meox2
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192D03.bB6Ng01-192D03.g
ACCGA015494GA015495
length1,2161,131
definitionB6Ng01-192D03.b B6Ng01-192D03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatc
tcttgtactaaggtcaaatctaagtggatcaggacttcacataaaaccag
agacactgaacttatagaggagaagtggggaaaagccttggagatttggc
acaggggaaaaatcctgaacggaccagcaatgcctgtgcctgttagatcg
aattcgacaaatggaactatgaacttccaaggtcttgcaaggccaaagag
acaaccgtgttcttat
gaattcactctacagagcaggctggacatggattcagagacctgcttgac
tctgcctcctgagagatgggataaagatgcagaccaacatgctgagtttg
aaaaagagtttctcagccaatatgattattttttgttgttttgtttcctc
aacaacttccaggtttcctctggagcactcactccctctcagactcttta
aacatagttgtaaatcacattttacttgggtagatgaagaaaagatgggg
ataaataaaaattcattgtattcatcattcctaaattccttctagctcat
tataaaattttaaaataaacttattctatgctcctactggaaaacaaaaa
caagataaaaaacaataatccatcacaatatataatcaaaataaaataga
aactatataagtgcaaaaaaaccattgaaactataaactatagtagggat
atagtatcagtgagagaagaataatgagatgcaaacttaagcaccctcac
ataagccttgtaatcgagcattgtatcattcggtgcaaggatgttaaatt
tgtgggataaattaatgtattaaataatattcaatgaggcatataatagg
agatatgaatatttttatttcacttgcttaataattttatcatcaattgc
acagtgttcctttttataagccatctgtttgtgcaaaggacttatttata
agttagatagaagatagattgatggatagatatgtaatagataagtagat
aatgagatcgtcagataggtagacagagagatggatgatagatcttaatt
ccttttagaaataacatgactagtcttgaattactgtccatcctgatcta
gaaataacttctttacagaatttcatttgctagaacctgattttcagact
agatctctgtcaacatgctgagggttatgaccgtaatttctggagagaac
ggaaaaaaacttcaatttgaaaaagataggaaacaacattgatccgcaac
atattttgaaataaaagcatgttttgtacattatgcatatatatgtgtgt
ctgtgtaaaatacaactacacaatataccacagcccaatttgttatgaaa
tggaccatggaaccagcatgcctcactagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38022133_38023269
seq2: B6Ng01-192D03.g_62_1192 (reverse)

seq1  AACTAGGTGAAGGCATGCTTGTT-CATTGTCAATTTTCATAACAAAATGG  49
      ||||| ||| ||||||||| ||| ||| ||| | |||||||||||| |||
seq2  AACTA-GTG-AGGCATGCTGGTTCCATGGTCCA-TTTCATAACAAATTGG  47

seq1  GCTGTGGTATATTTGTGTAGTTTGTAATTTTACACAGACACACATATATA  99
      ||||||||||| |||||||| |||| ||||||||||||||||||||||||
seq2  GCTGTGGTATA-TTGTGTAG-TTGT-ATTTTACACAGACACACATATATA  94

seq1  TGCATTAAATGTAC-AAACATGCTTTTATTTCAAAATATGTTTGCGGATC  148
      |||||  ||||||| ||||||||||||||||||||||||| |||||||||
seq2  TGCAT--AATGTACAAAACATGCTTTTATTTCAAAATATG-TTGCGGATC  141

seq1  AATG-TGTTTCCTATCTTTTTCAAATTGAAGTTTTTTTCCGTTCTCTCCA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTTTCCTATCTTTTTCAAATTGAAGTTTTTTTCCGTTCTCTCCA  191

seq1  GAAATTACGGTCATAACCCTCAGCATGTTGACAGAGATCTAGTCTGAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACGGTCATAACCCTCAGCATGTTGACAGAGATCTAGTCTGAAAA  241

seq1  TCAGGTTCTAGCAAATGAAATTCTGTAAAGAAGTTATTTCTAGATCAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCTAGCAAATGAAATTCTGTAAAGAAGTTATTTCTAGATCAGGA  291

seq1  TGGACAGTAATTCAAGACTAGTCATGTTATTTCTAAAAGGAATTAAGATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTAATTCAAGACTAGTCATGTTATTTCTAAAAGGAATTAAGATC  341

seq1  TATCATCCATCTCTCTGTCTACCTATCTGACGATCTCATTATCTACTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCATCTCTCTGTCTACCTATCTGACGATCTCATTATCTACTTAT  391

seq1  CTATTACATATCTATCCATCAATCTATCTTCTATCTAACTTATAAATAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACATATCTATCCATCAATCTATCTTCTATCTAACTTATAAATAAG  441

seq1  TCCTTTGCACAAACAGATGGCTTATAAAAAGGAACACTGTGCAATTGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCACAAACAGATGGCTTATAAAAAGGAACACTGTGCAATTGATG  491

seq1  ATAAAATTATTAAGCAAGTGAAATAAAAATATTCATATCTCCTATTATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATTAAGCAAGTGAAATAAAAATATTCATATCTCCTATTATAT  541

seq1  GCCTCATTGAATATTATTTAATACATTAATTTATCCCACAAATTTAACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTGAATATTATTTAATACATTAATTTATCCCACAAATTTAACAT  591

seq1  CCTTGCACCGAATGATACAATGCTCGATTACAAGGCTTATGTGAGGGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCACCGAATGATACAATGCTCGATTACAAGGCTTATGTGAGGGTGC  641

seq1  TTAAGTTTGCATCTCATTATTCTTCTCTCACTGATACTATATCCCTACTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGCATCTCATTATTCTTCTCTCACTGATACTATATCCCTACTA  691

seq1  TAGTTTATAGTTTCAATGGTTTTTTTGCACTTATATAGTTTCTATTTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATAGTTTCAATGGTTTTTTTGCACTTATATAGTTTCTATTTTAT  741

seq1  TTTGATTATATATTGTGATGGATTATTGTTTTTTATCTTGTTTTTGTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATATATTGTGATGGATTATTGTTTTTTATCTTGTTTTTGTTTT  791

seq1  CCAGTAGGAGCATAGAATAAGTTTATTTTAAAATTTTATAATGAGCTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGAGCATAGAATAAGTTTATTTTAAAATTTTATAATGAGCTAGA  841

seq1  AGGAATTTAGGAATGATGAATACAATGAATTTTTATTTATCCCCATCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTAGGAATGATGAATACAATGAATTTTTATTTATCCCCATCTTT  891

seq1  TCTTCATCTACCCAAGTAAAATGTGATTTACAACTATGTTTAAAGAGTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCTACCCAAGTAAAATGTGATTTACAACTATGTTTAAAGAGTCT  941

seq1  GAGAGGGAGTGAGTGCTCCAGAGGAAACCTGGAAGTTGTTGAGGAAACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGTGAGTGCTCCAGAGGAAACCTGGAAGTTGTTGAGGAAACAA  991

seq1  AACAACAAAAAATAATCATATTGGCTGAGAAACTCTTTTTCAAACTCAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAAATAATCATATTGGCTGAGAAACTCTTTTTCAAACTCAGC  1041

seq1  ATGTTGGTCTGCATCTTTATCCCATCTCTCAGGAGGCAGAGTCAAGCAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTCTGCATCTTTATCCCATCTCTCAGGAGGCAGAGTCAAGCAGG  1091

seq1  TCTCTGAATCCATGTCCAGCCTGCTCTGTAGAGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATCCATGTCCAGCCTGCTCTGTAGAGTGAATTC  1131