BAC Information

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BAC

Clone NameB6Ng01-192E09
Chromosome12 (Build37)
Map Location 58,865,022 - 59,005,136
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192E09.bB6Ng01-192E09.g
ACCGA015553GA015554
length1,1001,103
definitionB6Ng01-192E09.b B6Ng01-192E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,004,038 - 59,005,136)(58,865,022 - 58,866,138)
sequence
gaattcaattgatttttagtaaaatataacagaatgaaacagaacatata
tcactagattttgtgcagataatgagtttgattttgtaaagtcttttatt
atgcaaagtaagcacatagacatatattggatcaatattttgatagtcac
ttcactaaatggagatagaatacattttgaacatcaatatccaacgtaaa
ctgtgaagatgaaattatatttaaaataactttatatgttttctatggtt
accatggtaaatacacaaggttagtgcctcaaagcaacatgaatttagtc
tatactcctatagtcaagaagtctaaatatgagtctcaagctaacatcac
aatgctttcacatctgcattcctgtctagaggtttagcagatgggacagg
gccactgccttttcgttttctgaggttttgttttgtttttgacttgggct
ttgttttgttttgtttttcaactcagagtttctctgtgtagccctggttg
ttctggaacacactctgtagactaggttgtccatgaactctcagagattt
gcctccagagtgctaggattaaaggtgtgcaccaccactgctcataggct
acccatcctcagtctagaatcttcatttctacatttccagctggtctttc
tctttcctgagcttctagaatccctgtctatggattccaagtccccactg
cctcacagtcttcctgggcagtggcactttcaggattcgctgctgctctc
agaaaagctgtgggactggcctggcttctcctcggagcttgctgatttcc
aaggagtctctttgcttgcttgccccactcttttgaaaggttgctaggca
gcatggttttcatggctttactcctttgctgtttggattttgtgtttcat
aagtaattcatcccttattgtagagatgttcagtttctgctggtgctact
tttttcctaaataattaaatgtaataaaaggaacttacacttatccttct
caattttttctcattatttttgaggatttaatacaatgaagtgtggatat
atgtagtctccatctccccctcattcagttccttccttatccacatcaca


gaattcattctgtagtgttgaagacttttctttcaagtagagcacttacc
aactatatctttttttttttgttaaacttgtagcacataataattaacct
aatattcatgatgattttaattttctgattttatctctgggactatagaa
ttgaaagcagcctattgacgccaatgcttcagaattcaatgaactcatga
tgatcattagaagcagaaataaaaccgccccccatcttctgtggttggaa
cattaaaagttttaaagcaataagcacttttagcagttacttggagtagc
attgaaaccttttataaacatcttttcaccctgaagaacttcaccttctt
tcatgagcacaaaaacagagaatcctagagttaggaatattgtacatagc
ccacagtgagcatttgttttatgtttattgaaattagtattttaaaaaaa
ttccttcaaaaagaaatacatttcaactgtggactcacagtggtaagagc
cagggtataagaagaggtatgtgagttttataactgtgatagtaagcaga
tatgcagtttagctttgtattagtttcctttaatgttcagaagaataaac
taatctcactatgccaattatttgaatctaagtaaattaaaagtaagata
aggttggtttttagggatgaaatagttcaaaagactaaagctttttaaaa
agtgcgtatcagactaaggtttagaattgcatgtctggaaaaactattca
taatctgcttttctctcccgtcccttttatttttgcacgtatttattttg
gccagctggcgagacagatcttttttcaggggctcagccttccagtctga
gtttggtcctccaaaaccaaccttgatcaattcccgtcttacttgctctg
gtgtctgaatggtgttgatgtcacaagggcatggtgactcagttgcctgt
cccaaatgggttagagcttgccaagtaagaccttagctaggcgctagggg
aagaagttagagtgcatctcagaagccctgtctcgaattggcatccatgc
agctgtaataagaatctcctctcctcctttcttctctccttctctctgtg
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59004038_59005136
seq2: B6Ng01-192E09.b_43_1142 (reverse)

seq1  TGTGATGTGGGATAAGAAGGAAACTGAATGA--GGGAGAT-GAGACTACA  47
      |||||||| ||||||| | | ||||||||||  ||||||| |||||||||
seq2  TGTGATGT-GGATAAGGAAGGAACTGAATGAGGGGGAGATGGAGACTACA  49

seq1  TATAAACCACACTTCATTGTATAAAATTCTCAAAAATAATGAGAAAAAAT  97
      ||| | |||||||||||||||| |||| ||||||||||||||||||||||
seq2  TAT-ATCCACACTTCATTGTATTAAATCCTCAAAAATAATGAGAAAAAAT  98

seq1  TGAGAAGGATAAGTGTAAGTTCCTTTTATTACATTTAATTATTTAGGAAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGATAAGTGTAAGTTCCTTTTATTACATTTAATTATTTAGGAAA  148

seq1  AAAGTAGCACCAGCAGAAACTGAACATCTCTACAATAAGGGATGAATTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCACCAGCAGAAACTGAACATCTCTACAATAAGGGATGAATTAC  198

seq1  TTATGAAACACAAAATCCAAACAGCAAAGGAGTAAAGCCATGAAAACCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACACAAAATCCAAACAGCAAAGGAGTAAAGCCATGAAAACCAT  248

seq1  GCTGCCTAGCAACCTTTCAAAAGAGTGGGGCAAGCAAGCAAAGAGACTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAGCAACCTTTCAAAAGAGTGGGGCAAGCAAGCAAAGAGACTCC  298

seq1  TTGGAAATCAGCAAGCTCCGAGGAGAAGCCAGGCCAGTCCCACAGCTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCAGCAAGCTCCGAGGAGAAGCCAGGCCAGTCCCACAGCTTTT  348

seq1  CTGAGAGCAGCAGCGAATCCTGAAAGTGCCACTGCCCAGGAAGACTGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCAGCAGCGAATCCTGAAAGTGCCACTGCCCAGGAAGACTGTGA  398

seq1  GGCAGTGGGGACTTGGAATCCATAGACAGGGATTCTAGAAGCTCAGGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGGGACTTGGAATCCATAGACAGGGATTCTAGAAGCTCAGGAAA  448

seq1  GAGAAAGACCAGCTGGAAATGTAGAAATGAAGATTCTAGACTGAGGATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACCAGCTGGAAATGTAGAAATGAAGATTCTAGACTGAGGATGG  498

seq1  GTAGCCTATGAGCAGTGGTGGTGCACACCTTTAATCCTAGCACTCTGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTATGAGCAGTGGTGGTGCACACCTTTAATCCTAGCACTCTGGAG  548

seq1  GCAAATCTCTGAGAGTTCATGGACAACCTAGTCTACAGAGTGTGTTCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTCTGAGAGTTCATGGACAACCTAGTCTACAGAGTGTGTTCCAG  598

seq1  AACAACCAGGGCTACACAGAGAAACTCTGAGTTGAAAAACAAAACAAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGGGCTACACAGAGAAACTCTGAGTTGAAAAACAAAACAAAAC  648

seq1  AAAGCCCAAGTCAAAAACAAAACAAAACCTCAGAAAACGAAAAGGCAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAGTCAAAAACAAAACAAAACCTCAGAAAACGAAAAGGCAGTG  698

seq1  GCCCTGTCCCATCTGCTAAACCTCTAGACAGGAATGCAGATGTGAAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCCCATCTGCTAAACCTCTAGACAGGAATGCAGATGTGAAAGCA  748

seq1  TTGTGATGTTAGCTTGAGACTCATATTTAGACTTCTTGACTATAGGAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGTTAGCTTGAGACTCATATTTAGACTTCTTGACTATAGGAGTA  798

seq1  TAGACTAAATTCATGTTGCTTTGAGGCACTAACCTTGTGTATTTACCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAATTCATGTTGCTTTGAGGCACTAACCTTGTGTATTTACCATG  848

seq1  GTAACCATAGAAAACATATAAAGTTATTTTAAATATAATTTCATCTTCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCATAGAAAACATATAAAGTTATTTTAAATATAATTTCATCTTCAC  898

seq1  AGTTTACGTTGGATATTGATGTTCAAAATGTATTCTATCTCCATTTAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACGTTGGATATTGATGTTCAAAATGTATTCTATCTCCATTTAGTG  948

seq1  AAGTGACTATCAAAATATTGATCCAATATATGTCTATGTGCTTACTTTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTATCAAAATATTGATCCAATATATGTCTATGTGCTTACTTTGC  998

seq1  ATAATAAAAGACTTTACAAAATCAAACTCATTATCTGCACAAAATCTAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAGACTTTACAAAATCAAACTCATTATCTGCACAAAATCTAGT  1048

seq1  GATATATGTTCTGTTTCATTCTGTTATATTTTACTAAAAATCAATTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGTTCTGTTTCATTCTGTTATATTTTACTAAAAATCAATTGAAT  1098

seq1  TC  1099
      ||
seq2  TC  1100


seq1: chr12_58865022_58866138
seq2: B6Ng01-192E09.g_68_1170

seq1  GAATTCATTCTGTAGTGTTGAAGACTTTTCTTTCAAGTAGAGCACTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGTGTTGAAGACTTTTCTTTCAAGTAGAGCACTTACC  50

seq1  AACTATATCTTTTTTTTTTTGTTAAACTTGTAGCACATAATAATTAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATCTTTTTTTTTTTGTTAAACTTGTAGCACATAATAATTAACCT  100

seq1  AATATTCATGATGATTTTAATTTTCTGATTTTATCTCTGGGACTATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATGATGATTTTAATTTTCTGATTTTATCTCTGGGACTATAGAA  150

seq1  TTGAAAGCAGCCTATTGACGCCAATGCTTCAGAATTCAATGAACTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAGCCTATTGACGCCAATGCTTCAGAATTCAATGAACTCATGA  200

seq1  TGATCATTAGAAGCAGAAATAAAACCGCCCCCCATCTTCTGTGGTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTAGAAGCAGAAATAAAACCGCCCCCCATCTTCTGTGGTTGGAA  250

seq1  CATTAAAAGTTTTAAAGCAATAAGCACTTTTAGCAGTTACTTGGAGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGTTTTAAAGCAATAAGCACTTTTAGCAGTTACTTGGAGTAGC  300

seq1  ATTGAAACCTTTTATAAACATCTTTTCACCCTGAAGAACTTCACCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACCTTTTATAAACATCTTTTCACCCTGAAGAACTTCACCTTCTT  350

seq1  TCATGAGCACAAAAACAGAGAATCCTAGAGTTAGGAATATTGTACATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGCACAAAAACAGAGAATCCTAGAGTTAGGAATATTGTACATAGC  400

seq1  CCACAGTGAGCATTTGTTTTATGTTTATTGAAATTAGTATTTTAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGAGCATTTGTTTTATGTTTATTGAAATTAGTATTTTAAAAAAA  450

seq1  TTCCTTCAAAAAGAAATACATTTCAACTGTGGACTCACAGTGGTAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAAAAAGAAATACATTTCAACTGTGGACTCACAGTGGTAAGAGC  500

seq1  CAGGGTATAAGAAGAGGTATGTGAGTTTTATAACTGTGATAGTAAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATAAGAAGAGGTATGTGAGTTTTATAACTGTGATAGTAAGCAGA  550

seq1  TATGCAGTTTAGCTTTGTATTAGTTTCCTTTAATGTTCAGAAGAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTTTAGCTTTGTATTAGTTTCCTTTAATGTTCAGAAGAATAAAC  600

seq1  TAATCTCACTATGCCAATTATTTGAATCTAAGTAAATTAAAAGTAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCACTATGCCAATTATTTGAATCTAAGTAAATTAAAAGTAAGATA  650

seq1  AGGTTGGTTTTTAGGGATGAAATAGTTCAAAAGACTAAGGCTTTTTAAAA  700
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTTGGTTTTTAGGGATGAAATAGTTCAAAAGACTAAAGCTTTTTAAAA  700

seq1  AGTGCGTATCAGGACTAAGGTTTAGAATTGCATGTCTGGAAAAACTATTC  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGTATCA-GACTAAGGTTTAGAATTGCATGTCTGGAAAAACTATTC  749

seq1  ATAATCTGCTTTTCTCTCCCGTCCCTTTTATTTTTGCACGTATTTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGCTTTTCTCTCCCGTCCCTTTTATTTTTGCACGTATTTATTTT  799

seq1  GGCCAGCTGGCGAGACAGATC-TTTTTCAGGGGCTCAGCCTTCCAGTCTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCAGCTGGCGAGACAGATCTTTTTTCAGGGGCTCAGCCTTCCAGTCTG  849

seq1  AGTTTGGTCCTCCAAAACCAACCTTGGATCAAATTCCCGTCTTACTTGCT  899
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  AGTTTGGTCCTCCAAAACCAACCTT-GATC-AATTCCCGTCTTACTTGCT  897

seq1  CTGGTGTCTGAATGGTGTTGATGTCACAGGGGCATGGTGACTCAGTTGCC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGTGTCTGAATGGTGTTGATGTCACAAGGGCATGGTGACTCAGTTGCC  947

seq1  TGTCCCAAATGGGTTAGAGCTTGCCAAGTAAAGACCTTAGCTAGGCGGCT  999
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TGTCCCAAATGGGTTAGAGCTTGCCAAGT-AAGACCTTAGCTAGGC-GCT  995

seq1  AGGGGAAGGAAGTTAGAGTGGAATCCTCAGAAGCCCTGTCTCGAATTTGC  1049
      ||||||| |||||||||||| |   |||||||||||||||||||||| ||
seq2  AGGGGAA-GAAGTTAGAGTGCA--TCTCAGAAGCCCTGTCTCGAATTGGC  1042

seq1  ATTTCCCATGCCAGCTGTTTAAT-AGGATCTCTCTCTCTCTCTCTCTCTC  1098
      ||   ||||| ||||||  |||| || ||||| |||||   || ||| ||
seq2  AT---CCATG-CAGCTG--TAATAAGAATCTC-CTCTCCTCCTTTCT-TC  1084

seq1  TCTCTCTCTCTCTGTGTCT  1117
      ||||  |||||||||||||
seq2  TCTCCTTCTCTCTGTGTCT  1103


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