BAC Information

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BAC

Clone NameB6Ng01-192P06
Chromosome12 (Build37)
Map Location 86,970,390 - 87,102,937
singlet/doubletdoublet
Overlap geneJundm2, LOC100042073, Batf, BC011209
Upstream gene7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124
Downstream gene0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192P06.bB6Ng01-192P06.g
ACCGA016058GA016059
length732992
definitionB6Ng01-192P06.b B6Ng01-192P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,970,390 - 86,971,117)(87,101,943 - 87,102,937)
sequence
gaattctgtagtagctcaggggattctgtcagggacagcagaggggcctt
cctagaggaggtgacattgactcttgaaggatgagaagcagtttaccaag
taggaaaggagcgtcttcttggctgaggtgggggaggatgtggcctccag
actagaaagtattgaaggaagggtttgatgggctccgagggcggatggaa
cagttcagtgacctgggtgtcaaactggcctgggtgacttgttaaactgc
agccacagcccctgaatgtgttactcccagccctctgggcccgggccttg
tgcaggcgttacctggtaagaaccgggattgggggacaggggctgtgtct
cactggcctgcttagggtaaggcccggcaggggcaggctgcacccatcac
cacggcagtttgtgggcagagcctcttggcagaggggagattgcactgcc
agccacttcctccggttccttccctttgcctgatgtcacggttacctcgg
cctgctctggggtgaggccgaggtcgggcggaatcaatgtcagccaggtt
tctgtatccctgatgcaggtcagccagaggagctgccacttctggttcgg
tttcaaagaaggctcgggcatgggaggtgtcgggtgtggaggcatcgatg
aggcacctctccagcagcctcccagagggccagtgtggcttaaggaggga
gtctttaaggtggtgtgggcgggaaggaagga
gaattcagtaactacattgatttatggcagtcttgttctatgactgaatg
ctcatataaactcttcacagggaacatattgttcaaggcagcctggatct
gtgtcctcgggccatggtcactcctagttgggtcagactaaaccaattct
tgttcccttcgggtgtgcatggacacctccagggacttgaacctccaagg
cacactaattcctcatctacatttctttcaggaaatcaaggaaggaagtc
atgtacccaaaggcaagcactgttatgcccaaagccctgctcctcctgcc
agtcaggttggccttttggcaagttgtccacttggcgataagggggaagg
aggagggacagagcatagtagagcagttcacaaagccccaggaaacaaag
ggacagcggccctcagggcagtaatgtccagggtgcggaggctttggctt
ctacctttgcttttctgggtaagactctttcaaaattcaatttaagcatg
aaaaaaaaattggaggcaggtgagcttcatgtaggcccacaaaagcaagg
gtaaaagggggtcaaaagcctggaatctgaatgcaacatctatcaaataa
agaccttatattctaaattacatactactgtgtccttttaagagtgagtc
aaccgggcgtggtggtgcacgcctttaatcccagcacttgggaggcagag
gcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccagggctatacagagaaaccctgtcttcgaaaaaccaaaaat
aaaaaaaaaaagagtgagtcagctggcttgtcaattctgtgcccaggagt
aaagtggcccccattcatccaaaaacatgctaaagtaaaggaggtgagtt
tacccccttaatgagataaatgttgagccagatcccctcattgccagtcc
gcttagttcaagtgtttttcacttgtggtcattgactcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86970390_86971117
seq2: B6Ng01-192P06.b_46_777

seq1  GAATTCTGTAGTAGCTCAGGGGATTCTGTCAGGGACAGCAGAGGGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTAGCTCAGGGGATTCTGTCAGGGACAGCAGAGGGGCCTT  50

seq1  CCTAGAGGAGGTGACATTGACTCTTGAAGGATGAGAAGCAGTTTACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGAGGTGACATTGACTCTTGAAGGATGAGAAGCAGTTTACCAAG  100

seq1  TAGGAAAGGAGCGTCTTCTTGGCTGAGGTGGGGGAGGATGTGGCCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGGAGCGTCTTCTTGGCTGAGGTGGGGGAGGATGTGGCCTCCAG  150

seq1  ACTAGAAAGTATTGAAGGAAGGGTTTGATGGGCTCCGAGGGCGGATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAGTATTGAAGGAAGGGTTTGATGGGCTCCGAGGGCGGATGGAA  200

seq1  CAGTTCAGTGACCTGGGTGTCAAACTGGCCTGGGTGACTTGTTAAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTGACCTGGGTGTCAAACTGGCCTGGGTGACTTGTTAAACTGC  250

seq1  AGCCACAGCCCCTGAATGTGTTACTCCCAGCCCTCTGGGCCCGGGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCCCCTGAATGTGTTACTCCCAGCCCTCTGGGCCCGGGCCTTG  300

seq1  TGCAGGCGTTACCTGGTAAGAACCGGGATTGGGGGACAGGGGCTGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCGTTACCTGGTAAGAACCGGGATTGGGGGACAGGGGCTGTGTCT  350

seq1  CACTGGCCTGCTTAGGGTAAGGCCCGGCAGGGGCAGGCTGCACCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTGCTTAGGGTAAGGCCCGGCAGGGGCAGGCTGCACCCATCAC  400

seq1  CACGGCAGTTTGTGGGCAGAGCCTCTTGGCAGAGGGGAGATTGCACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCAGTTTGTGGGCAGAGCCTCTTGGCAGAGGGGAGATTGCACTGCC  450

seq1  AGCCACTTCCTCCGGTTCCTTCCCTTTGCCTGATGTCACGGTTACCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCCTCCGGTTCCTTCCCTTTGCCTGATGTCACGGTTACCTCGG  500

seq1  CCTGCTCTGGGGTGAGGCCGAGGTCGGGCGGAATCAATGTCAGCCAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGGGGTGAGGCCGAGGTCGGGCGGAATCAATGTCAGCCAGGTT  550

seq1  TCTGTATCCCTGATGCAGGTCAGCCAGAGGAGCTGCCACTTCTGGTTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCCTGATGCAGGTCAGCCAGAGGAGCTGCCACTTCTGGTTCGG  600

seq1  TTTCAAAGAAGGCTCGGGCATGGGAGGTGTCGGGTGTGGAGGCATCGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAAGGCTCGGGCATGGGAGGTGTCGGGTGTGGAGGCATCGATG  650

seq1  AGGCACCTCTCCAGCAGCCTCCCAGAGGGCCAGTGTGGCTTAAGGA-GGA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGCACCTCTCCAGCAGCCTCCCAGAGGGCCAGTGTGGCTTAAGGAGGGA  700

seq1  GTC-TTAAGGTGGTGT-GGCGGG-AGGAAGGA  728
      ||| |||||||||||| |||||| ||||||||
seq2  GTCTTTAAGGTGGTGTGGGCGGGAAGGAAGGA  732

seq1: chr12_87101943_87102937
seq2: B6Ng01-192P06.g_67_1058 (reverse)

seq1  CCAGAAGTC-ATGACCCACAAGTTGAAAACCAC-TGAACT-AGC-GACT-  45
      |||| |||| |||| ||||||| |||||| ||| |||||| ||| |||| 
seq2  CCAGGAGTCAATGA-CCACAAG-TGAAAAACACTTGAACTAAGCGGACTG  48

seq1  GCAATGAGGGGATCTGGCTTCAACA-TTATCTCATTAAGGGGAT-AACTC  93
      |||||||||||||||||| |||||| |||||||||||||||| | |||||
seq2  GCAATGAGGGGATCTGGC-TCAACATTTATCTCATTAAGGGGGTAAACTC  97

seq1  ACCTCCCTTTACCTTAGCATGTTTTGGGATGAATGGGGGCCACTTTACTC  143
      |||| ||||||| |||||||||||| ||||||||||||||||||||||||
seq2  ACCT-CCTTTACTTTAGCATGTTTTTGGATGAATGGGGGCCACTTTACTC  146

seq1  CTGGCCACAGGATTGACAAGCCAGCTGACTCACTCTTTTTTTTTTTTTTT  193
      |||| ||||| ||||||||||||||||||||||||       ||||||||
seq2  CTGGGCACAGAATTGACAAGCCAGCTGACTCACTC-------TTTTTTTT  189

seq1  TTTTTTTTTGGTTTTTCG-AGACAGGGTTTCTCTGTATAGCCCTGGCTGT  242
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATTTTTGGTTTTTCGAAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  239

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  289

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCG  339

seq1  GTTGACTCACTCTTAAAAGGACACAGTAGTATGTAATTTAGAATATAAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTCACTCTTAAAAGGACACAGTAGTATGTAATTTAGAATATAAGG  389

seq1  TCTTTATTTGATAGATGTTGCATTCAGATTCCAGGCTTTTGACCCCCTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTGATAGATGTTGCATTCAGATTCCAGGCTTTTGACCCCCTTT  439

seq1  TACCCTTGCTTTTGTGGGCCTACATGAAGCTCACCTGCCTCCAATTTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTGCTTTTGTGGGCCTACATGAAGCTCACCTGCCTCCAATTTTTT  489

seq1  TTTCATGCTTAAATTGAATTTTGAAAGAGTCTTACCCAGAAAAGCAAAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTTAAATTGAATTTTGAAAGAGTCTTACCCAGAAAAGCAAAGG  539

seq1  TAGAAGCCAAAGCCTCCGCACCCTGGACATTACTGCCCTGAGGGCCGCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCAAAGCCTCCGCACCCTGGACATTACTGCCCTGAGGGCCGCTG  589

seq1  TCCCTTTGTTTCCTGGGGCTTTGTGAACTGCTCTACTATGCTCTGTCCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGTTTCCTGGGGCTTTGTGAACTGCTCTACTATGCTCTGTCCCT  639

seq1  CCTCCTTCCCCCTTATCGCCAAGTGGACAACTTGCCAAAAGGCCAACCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCCCCTTATCGCCAAGTGGACAACTTGCCAAAAGGCCAACCTG  689

seq1  ACTGGCAGGAGGAGCAGGGCTTTGGGCATAACAGTGCTTGCCTTTGGGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGGAGGAGCAGGGCTTTGGGCATAACAGTGCTTGCCTTTGGGTA  739

seq1  CATGACTTCCTTCCTTGATTTCCTGAAAGAAATGTAGATGAGGAATTAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCCTTCCTTGATTTCCTGAAAGAAATGTAGATGAGGAATTAGT  789

seq1  GTGCCTTGGAGGTTCAAGTCCCTGGAGGTGTCCATGCACACCCGAAGGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGGAGGTTCAAGTCCCTGGAGGTGTCCATGCACACCCGAAGGGA  839

seq1  ACAAGAATTGGTTTAGTCTGACCCAACTAGGAGTGACCATGGCCCGAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTGGTTTAGTCTGACCCAACTAGGAGTGACCATGGCCCGAGGA  889

seq1  CACAGATCCAGGCTGCCTTGAACAATATGTTCCCTGTGAAGAGTTTATAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCCAGGCTGCCTTGAACAATATGTTCCCTGTGAAGAGTTTATAT  939

seq1  GAGCATTCAGTCATAGAACAAGACTGCCATAAATCAATGTAGTTACTGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCAGTCATAGAACAAGACTGCCATAAATCAATGTAGTTACTGAA  989

seq1  TTC  995
      |||
seq2  TTC  992