BAC Information

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BAC

Clone NameB6Ng01-193A05
Chromosome12 (Build37)
Map Location 118,839,958 - 118,987,407
singlet/doubletdoublet
Overlap geneRapgef5, A930023M06Rik
Upstream genePtprn2, LOC432713, LOC100042461
Downstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193A05.bB6Ng01-193A05.g
ACCGA016101GA016102
length1,132277
definitionB6Ng01-193A05.b B6Ng01-193A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,986,268 - 118,987,407)(118,839,958 - 118,840,234)
sequence
gaattcatataatcagcagggaggtccaggatcagagatcaataaggagg
cagcctttcccttcacttgtagaacccacaaatctcaggtgcatatctga
gcttggtgtactaggagacaataggtccactgggaggagtttgttgctca
ctgtctcgaagtggtttacattggggcatcaagagatgcttttgaagtaa
ccgaactctcacaagtggggactactcctgacatcagcttttatgcccgg
ttctgtgtttacacagtcactggtgctaagctaatgaaatgctatttaaa
agaatcagattctcagaatcttgcaagcatcgtgatggcactgttccata
tgcccaaagagaccctgggagttactctgtgtacaacagagagagatact
cagaccgtttgcttcctagagctgaagagacaagcgtgtttcctttacag
agagaagaagggaaacataatgaaatttacataccagcttttcaaaattg
acgagattatccaagaatgttttatttccttcatgaataaacgttacatc
tgaaaggtaaaaacaagataatgtactattaggaagacatcatgaaacaa
cagcgttgttgttgcaaccatgcaatttatcatgtttttgcttaagcatt
ttgaaactatgccacatatttgacaaggcaacttgaagctaaaactgtat
aacatctgatataaaaattaagtgggcagaatagacttccttaaatattt
tgcacttaaagttggttttagcctacatgattgaagctaatgctagtttg
taacttaactggtccattaggtttttaggtcaaaatactgagcagaaaat
aaatgaatattcataagcaacagggacttaatatttgttatatttgcttt
ttaaaaaatccgcgccagctaatacaaatgggacttgctttcgtcaaaca
gtttagattcagattttcaagtttacatttaaaacatgaaaaatgaaaaa
gtctgtgtatcagaagtaaggaaaaggcagatgtggccccattactggtg
gactgttgtgatagcctgggctagttatattttggaggttattctcttct
ctggttgagtgctgcaaccaaagagtcagcac

ttacgacttgacagaatgaggcctctggggagcattttaaatagcacttt
aacttttaacctggtagaaatattggtaaatgtggctgtctagtttggaa
gttaattccgatggcttttcaggtttcctgagaccaaatagcttaggaca
tgtgttacagattcttataccagtaagcagtcagtggtgaatgcagaaca
ctctggaggtcactcggaaaacccaaggtagtcaatcagggcttttagat
gattccatggggggtgaggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118986268_118987407
seq2: B6Ng01-193A05.b_49_1180 (reverse)

seq1  GTGCTGACTCTTTGTTTGCAGCCACTC-ACCAGAGAAGAGAATTAACTTC  49
      |||||||||||||| |||||| ||||| ||||||||||||||| | || |
seq2  GTGCTGACTCTTTGGTTGCAG-CACTCAACCAGAGAAGAGAATAACCTCC  49

seq1  -AAATATAACTAGCCCCAGGCTATCCACAACAGTCCACCAGTTAAATGGG  98
       |||||||||||| |||||||||| |||||||||||||||||  ||||||
seq2  AAAATATAACTAG-CCCAGGCTAT-CACAACAGTCCACCAGT--AATGGG  95

seq1  GCCAACATCCTGCCCTTTTCCTTACTTCTGATACACAGACTTTTTCATTT  148
      ||| |||| ||| |||||||||||||||||||||||||||||||||| ||
seq2  GCC-ACAT-CTG-CCTTTTCCTTACTTCTGATACACAGACTTTTTCA-TT  141

seq1  TTTCATGTTTTTAATGTAAACTTGAAAATCTGAATCTTAACTGTTTTGAC  198
      ||||||||||| ||||||||||||||||||||||||| ||||| ||||||
seq2  TTTCATGTTTTAAATGTAAACTTGAAAATCTGAATCTAAACTG-TTTGAC  190

seq1  GAAAGCAAGTCCCATTTGTATTAGCTGGCGCGGATTTTTTAAAAAGCAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGTCCCATTTGTATTAGCTGGCGCGGATTTTTTAAAAAGCAAA  240

seq1  TATAACAAATATTAAGTCCCTGTTGCTTATGAATATTCATTTATTTTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAATATTAAGTCCCTGTTGCTTATGAATATTCATTTATTTTCTG  290

seq1  CTCAGTATTTTGACCTAAAAACCTAATGGACCAGTTAAGTTACAAACTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATTTTGACCTAAAAACCTAATGGACCAGTTAAGTTACAAACTAG  340

seq1  CATTAGCTTCAATCATGTAGGCTAAAACCAACTTTAAGTGCAAAATATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTCAATCATGTAGGCTAAAACCAACTTTAAGTGCAAAATATTT  390

seq1  AAGGAAGTCTATTCTGCCCACTTAATTTTTATATCAGATGTTATACAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTCTATTCTGCCCACTTAATTTTTATATCAGATGTTATACAGTT  440

seq1  TTAGCTTCAAGTTGCCTTGTCAAATATGTGGCATAGTTTCAAAATGCTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCAAGTTGCCTTGTCAAATATGTGGCATAGTTTCAAAATGCTTA  490

seq1  AGCAAAAACATGATAAATTGCATGGTTGCAACAACAACGCTGTTGTTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACATGATAAATTGCATGGTTGCAACAACAACGCTGTTGTTTCA  540

seq1  TGATGTCTTCCTAATAGTACATTATCTTGTTTTTACCTTTCAGATGTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTCCTAATAGTACATTATCTTGTTTTTACCTTTCAGATGTAAC  590

seq1  GTTTATTCATGAAGGAAATAAAACATTCTTGGATAATCTCGTCAATTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCATGAAGGAAATAAAACATTCTTGGATAATCTCGTCAATTTTG  640

seq1  AAAAGCTGGTATGTAAATTTCATTATGTTTCCCTTCTTCTCTCTGTAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGGTATGTAAATTTCATTATGTTTCCCTTCTTCTCTCTGTAAAG  690

seq1  GAAACACGCTTGTCTCTTCAGCTCTAGGAAGCAAACGGTCTGAGTATCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACGCTTGTCTCTTCAGCTCTAGGAAGCAAACGGTCTGAGTATCTC  740

seq1  TCTCTGTTGTACACAGAGTAACTCCCAGGGTCTCTTTGGGCATATGGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGTACACAGAGTAACTCCCAGGGTCTCTTTGGGCATATGGAAC  790

seq1  AGTGCCATCACGATGCTTGCAAGATTCTGAGAATCTGATTCTTTTAAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATCACGATGCTTGCAAGATTCTGAGAATCTGATTCTTTTAAATA  840

seq1  GCATTTCATTAGCTTAGCACCAGTGACTGTGTAAACACAGAACCGGGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCATTAGCTTAGCACCAGTGACTGTGTAAACACAGAACCGGGCAT  890

seq1  AAAAGCTGATGTCAGGAGTAGTCCCCACTTGTGAGAGTTCGGTTACTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGATGTCAGGAGTAGTCCCCACTTGTGAGAGTTCGGTTACTTCA  940

seq1  AAAGCATCTCTTGATGCCCCAATGTAAACCACTTCGAGACAGTGAGCAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTCTTGATGCCCCAATGTAAACCACTTCGAGACAGTGAGCAAC  990

seq1  AAACTCCTCCCAGTGGACCTATTGTCTCCTAGTACACCAAGCTCAGATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTCCCAGTGGACCTATTGTCTCCTAGTACACCAAGCTCAGATAT  1040

seq1  GCACCTGAGATTTGTGGGTTCTACAAGTGAAGGGAAAGGCTGCCTCCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGAGATTTGTGGGTTCTACAAGTGAAGGGAAAGGCTGCCTCCTTA  1090

seq1  TTGATCTCTGATCCTGGACCTCCCTGCTGATTATATGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTGATCCTGGACCTCCCTGCTGATTATATGAATTC  1132


seq1: chr12_118839958_118840234
seq2: B6Ng01-193A05.g_71_347

seq1  TTACGACTTGACAGAATGAGGCCTCTGGGGAGCATTTTAAATAGCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGACTTGACAGAATGAGGCCTCTGGGGAGCATTTTAAATAGCACTTT  50

seq1  AACTTTTAACCTGGTAGAAATATTGGTAAATGTGGCTGTCTAGTTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAACCTGGTAGAAATATTGGTAAATGTGGCTGTCTAGTTTGGAA  100

seq1  GTTAATTCCGATGGCTTTTCAGGTTTCCTGAGACCAAATAGCTTAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCCGATGGCTTTTCAGGTTTCCTGAGACCAAATAGCTTAGGACA  150

seq1  TGTGTTACAGATTCTTATACCAGTAAGCAGTCAGTGGTGAATGCAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACAGATTCTTATACCAGTAAGCAGTCAGTGGTGAATGCAGAACA  200

seq1  CTCTGGAGGTCACTCGGAAAACCCAAGGTAGTCAATCAGGGCTTTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGGTCACTCGGAAAACCCAAGGTAGTCAATCAGGGCTTTTAGAT  250

seq1  GATTCCATGGGGGGTGAGGTGGGGGGG  277
      |||||||||||||||||||||||||||
seq2  GATTCCATGGGGGGTGAGGTGGGGGGG  277


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