BAC Information

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BAC

Clone NameB6Ng01-193C11
Chromosome12 (Build37)
Map Location 11,088,041 - 11,240,696
singlet/doubletdoublet
Overlap geneKcns3, LOC628276, Msgn1
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
Downstream gene5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193C11.bB6Ng01-193C11.g
ACCGA016205GA016206
length1,1461,068
definitionB6Ng01-193C11.b B6Ng01-193C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,239,564 - 11,240,696)(11,088,041 - 11,089,028)
sequence
gaattcagatctcctacatttatgtatttattttttaaagatttatttat
tttatgtatgtgagtacactgtcactgttctcagacacaccagaagaggg
cattggacccattatagatggttgtgaatcatcatgtgattgctgggaat
tgaacacaggacctctggaagagcagtcggtgctcttatccactgagcca
tctctccagccctgagtccctgcatttatgtttgtacactcagttcttat
ctcagacctagacatctttcctgactttttagtataattctacttctatc
tatagttctattaccaattcctgacacaattgtgcagttgtttgcttgtg
gctttttattttctgtttcccaagctagaatgcaagcaaaagggaagact
tttaactttgtgggttcgaaaactagaaaactgcttggtacaataactat
ctatgcatggcctctccctagtccactggaacctaaatacagcaatatac
attctttgcagaatgtagcctaggaaccctagcatagctcaaatggccgt
ggcagtcgctggtttcagcatgaggcattctctgttgtaaagctcagttt
tggccactcaaaaatacttgcttttccctgagcagagctcacttcctttg
ctcatgaaatgcatactttccctgtctcttgagaattcgtacaaatggaa
taacttatcatcccaagtggcttctattctttgtatttccaagattatta
cccatacctccatgaaatacaatatttgtcttctaaaaaattttccattt
tctctctgatgccaaaattaattttgatttttggattcctcagaaccttg
ctcagaaagtttataccttaccccctcttctatttttaccaactaagcta
actcatgggaaaactcggtgtaaaatagcatctctggggccttactaatc
cttaatatgctttttgaaagaattacctgccaatgtttttggggttgttt
gcatttacctaacaatatgccaagcatcagttatttctgaatctttgcca
ttcaatacaggaatagcaaagaaaagcaatcaggagacaagatgttggga
taactgaattgtgtgaaattcgaagatcttatagtcttcaatttgt

gaattcaggcttagctcagaagtggtcaggagcacagagccctgtggaga
gacttaggtggtaagggcttatagttgaaggctttttccatggaggttct
tggtgaaagagacagtccttgctttgaaactatttattgattgctcatag
tgtaaaattggtgcatatcacctcctcaggatgctcttttttcaccagag
attaaatactttttgcaggaaggaatgttcatgaaaggaaagcttttggc
taaaccctcagggctgctagatacctcattagcatggagaactctgtcac
atccctatgtagggagtgaggtcatgtgactgggtcctggttggaagcag
gtggagctcctactgtcctctcagaggttccctctcagagattccaggct
tccaaacctctcaaccttaccaagtttcctggcagggtccactgccctac
agattatgtcatctgcaaataagaataacttaatgtcttcctttcctgtt
tgagttctttttatttatttttcttggcttattactctagctgagacttt
aaggaccattttgaactagatcagaaatatgggcatccttaagctaattt
aaatgaaacacaacaaaatcaagcacacaaacacagtatcattgcagtaa
aactgccattccatatgaagcacactgcaaaagaccaaaagtctctaaag
atccctaaaatactcatcacattcaccatcctatgtcaagggtttaagta
cagcttatgcaatgaaatcttagctgtgagtgcattagtaataaaatcag
aaggaaagtagcatgtgttgagcactgttagtcggcattataatcacttt
gacaaaataactgaggggaaattattttggctgaatttcagagacctcag
aagaacagtcctttggtgctatcaatttgggactttggtggaggcatagc
acataccagggaccatttggtgaagtgagccacctcaccttgagttcagg
aaggagagagagagagaacagatactcttcaagtgcctctctgtgatcta
ctctcagtaactcctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11239564_11240696
seq2: B6Ng01-193C11.b_47_1192 (reverse)

seq1  ACAAATTGAAGA-ACTAAGA-CTCTGAATTCACCACCAATCAG-TATCCC  47
      ||||||||||||   ||||| ||  |||||   ||| | |||| ||||||
seq2  ACAAATTGAAGACTATAAGATCTTCGAATTTCACACAATTCAGTTATCCC  50

seq1  AACATCTGCTC-ACTGAATGC-TTTCTTTGCTAATCCCTGTA-TGGATGC  94
      |||||||  ||  |||| ||| |||||||||| || |||||| || ||| 
seq2  AACATCTTGTCTCCTGATTGCTTTTCTTTGCT-ATTCCTGTATTGAATGG  99

seq1  CAAGGATTCAGAAATACTGGATGCTTGGCATATTGTAGGAAAAATGCAAA  144
      ||| ||||||||||||   |||||||||||||||||  |  |||||||||
seq2  CAAAGATTCAGAAATAACTGATGCTTGGCATATTGTTAGGTAAATGCAAA  149

seq1  CAACCCCCAAAACATTGGCAGGTAA-TCTTTC-AAAAGCATA-TAAGGAA  191
      ||||||| ||||||||||||||||| |||||| ||||||||| |||||| 
seq2  CAACCCCAAAAACATTGGCAGGTAATTCTTTCAAAAAGCATATTAAGGAT  199

seq1  TAGTAAGGCCCCAGAGATGCTA-TTTACACCGAGTTTTCCCATGAGTTAG  240
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGTAAGGCCCCAGAGATGCTATTTTACACCGAGTTTTCCCATGAGTTAG  249

seq1  C-TAGTTGGT-AAAATAG-AGAGGGGGTAAGGTATAAAC-TTCTGAGCAA  286
      | |||||||| ||||||| |||||||||||||||||||| ||||||||||
seq2  CTTAGTTGGTAAAAATAGAAGAGGGGGTAAGGTATAAACTTTCTGAGCAA  299

seq1  GGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGCATCAGAGAGAAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGGAATCCAAAAATCAAAATTAATTTTGGCATCAGAGAGAAAA  349

seq1  TGGAAAATTTTTTAGAAGACAAATATTGTATTTCATGGAGGTATGGGTAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTTTTTAGAAGACAAATATTGTATTTCATGGAGGTATGGGTAA  399

seq1  TAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGATGATAAGTTATTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGGAAATACAAAGAATAGAAGCCACTTGGGATGATAAGTTATTC  449

seq1  CATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGCATTTCATGAGCAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTACGAATTCTCAAGAGACAGGGAAAGTATGCATTTCATGAGCAA  499

seq1  AGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTTTGAGTGGCCAAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGAGCTCTGCTCAGGGAAAAGCAAGTATTTTTGAGTGGCCAAAA  549

seq1  CTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACCAGCGACTGCCACG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTACAACAGAGAATGCCTCATGCTGAAACCAGCGACTGCCACG  599

seq1  GCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTCTGCAAAGAATGTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAGCTATGCTAGGGTTCCTAGGCTACATTCTGCAAAGAATGTA  649

seq1  TATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGGCCATGCATAGATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTATTTAGGTTCCAGTGGACTAGGGAGAGGCCATGCATAGATA  699

seq1  GTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCACAAAGTTAAAAGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTACCAAGCAGTTTTCTAGTTTTCGAACCCACAAAGTTAAAAGT  749

seq1  CTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAAAATAAAAAGCCAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTTGCTTGCATTCTAGCTTGGGAAACAGAAAATAAAAAGCCAC  799

seq1  AAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAATAGAACTATAGAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAACTGCACAATTGTGTCAGGAATTGGTAATAGAACTATAGAT  849

seq1  AGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTCTAGGTCTGAGATA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGAATTATACTAAAAAGTCAGGAAAGATGTCTAGGTCTGAGATA  899

seq1  AGAACTGAGTGTACAAACATAAATGCAGGGACTCAGGGCTGGAGAGATGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGTGTACAAACATAAATGCAGGGACTCAGGGCTGGAGAGATGG  949

seq1  CTCAGTGGATAAGAGCACCGACTGCTCTTCCAGAGGTCCTGTGTTCAATT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGATAAGAGCACCGACTGCTCTTCCAGAGGTCCTGTGTTCAATT  999

seq1  CCCAGCAATCACATGATGATTCACAACCATCTATAATGGGTCCAATGCCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAATCACATGATGATTCACAACCATCTATAATGGGTCCAATGCCC  1049

seq1  TCTTCTGGTGTGTCTGAGAACAGTGACAGTGTACTCACATACATAAAATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGTGTCTGAGAACAGTGACAGTGTACTCACATACATAAAATA  1099

seq1  AATAAATCTTTAAAAAATAAATACATAAATGTAGGAGATCTGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAATAAATACATAAATGTAGGAGATCTGAATTC  1146


seq1: chr12_11088041_11089028
seq2: B6Ng01-193C11.g_157_1132

seq1  GAGGTTCTTGGTGAAAGAGACAGTCCTTGCTTTGAAACTATTTATTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTTGGTGAAAGAGACAGTCCTTGCTTTGAAACTATTTATTGATT  50

seq1  GCTCATAGTGTAAAATTGGTGCATATCACCTCCTCAGGATGCTCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGTGTAAAATTGGTGCATATCACCTCCTCAGGATGCTCTTTTTT  100

seq1  CACCAGAGATTAAATACTTTTTGCAGGAAGGAATGTTCATGAAAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGATTAAATACTTTTTGCAGGAAGGAATGTTCATGAAAGGAAAG  150

seq1  CTTTTGGCTAAACCCTCAGGGCTGCTAGATACCTCATTAGCATGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTAAACCCTCAGGGCTGCTAGATACCTCATTAGCATGGAGAAC  200

seq1  TCTGTCACATCCCTATGTAGGGAGTGAGGTCATGTGACTGGGTCCTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACATCCCTATGTAGGGAGTGAGGTCATGTGACTGGGTCCTGGTT  250

seq1  GGAAGCAGGTGGAGCTCCTACTGTCCTCTCAGAGGTTCCCTCTCAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGTGGAGCTCCTACTGTCCTCTCAGAGGTTCCCTCTCAGAGAT  300

seq1  TCCAGGCTTCCAAACCTCTCAACCTTACCAAGTTTCCTGGCAGGGTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTCCAAACCTCTCAACCTTACCAAGTTTCCTGGCAGGGTCCAC  350

seq1  TGCCCTACAGATTATGTCATCTGCAAATAAGAATAACTTAATGTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACAGATTATGTCATCTGCAAATAAGAATAACTTAATGTCTTCCT  400

seq1  TTCCTGTTTGAGTTCTTTTTATTTATTTTTCTTGGCTTATTACTCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTGAGTTCTTTTTATTTATTTTTCTTGGCTTATTACTCTAGCT  450

seq1  GAGACTTTAAGGACCATTTTGAACTAGATCAGAAATATGGGCATCCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTAAGGACCATTTTGAACTAGATCAGAAATATGGGCATCCTTAA  500

seq1  GCTAATTTAAATGAAACACAACAAAATCAAGCACACAAACACAGTATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTAAATGAAACACAACAAAATCAAGCACACAAACACAGTATCAT  550

seq1  TGCAGTAAAACTGCCATTCCATATGAAGCACACTGCAAAAGACCAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAAACTGCCATTCCATATGAAGCACACTGCAAAAGACCAAAAGT  600

seq1  CTCTAAAGATCCCTAAAATACTCATCACATTCACCATCCTATGTCAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGATCCCTAAAATACTCATCACATTCACCATCCTATGTCAAGGG  650

seq1  TTTAAGTACAGCTTATGCAATGAAATCTTAGCTGTGAGTGCATTAGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACAGCTTATGCAATGAAATCTTAGCTGTGAGTGCATTAGTAAT  700

seq1  AAAATCAGAAGGAAAGTAGCATGTGTTGAGCACTGTTAGTCGGCATTAT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATCAGAAGGAAAGTAGCATGTGTTGAGCACTGTTAGTCGGCATTATA  750

seq1  ATCACTTTGACAAAATAACTGAGGGGGAAATTATTTTGGCTGAATTTCAG  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCACTTTGACAAAATAACTGA-GGGGAAATTATTTTGGCTGAATTTCAG  799

seq1  AGACCTCAGAAG-ACAGTCCCTTGGTGCTATCAATTT-GGACTTTGGT-G  846
      |||||||||||| ||||||| |||||||||||||||| |||||||||| |
seq2  AGACCTCAGAAGAACAGTCCTTTGGTGCTATCAATTTGGGACTTTGGTGG  849

seq1  AGGCATAGCACCATACCAGGGACCATTTGGTGAAAGTGAGCCA-CTCACC  895
      |||||||||| ||||||||||||||||||||| |||||||||| ||||||
seq2  AGGCATAGCA-CATACCAGGGACCATTTGGTG-AAGTGAGCCACCTCACC  897

seq1  TTGAAGTTTCCAGGAAAAAGGAGAGAGAGAGAGACCAAGATACTCTTCAA  945
      ||| ||||  ||||   ||||||||||||||||| | |||||||||||  
seq2  TTG-AGTT--CAGG---AAGGAGAGAGAGAGAGAAC-AGATACTCTTC--  938

seq1  AAGTGCTCTCTCTGTGATCTACTTCCTCCCAGTAACTCCTACC  988
      |||||| ||||||||||||||    ||| ||||||||||||||
seq2  AAGTGC-CTCTCTGTGATCTA----CTCTCAGTAACTCCTACC  976


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