BAC Information

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BAC

Clone NameB6Ng01-193M23
Chromosome12 (Build37)
Map Location 115,549,503 - 115,689,090
singlet/doubletdoublet
Overlap geneIgh, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6
Upstream geneIghg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260
Downstream geneEG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193M23.bB6Ng01-193M23.g
ACCGA016676GA016677
length1,139961
definitionB6Ng01-193M23.b B6Ng01-193M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,687,939 - 115,689,090)(115,549,503 - 115,550,146)
sequence
gaattcctcaattgaaacataggatctgaccatctttactcattgagaga
atattttaagacttttcctactgaatctcacccacaataaatatagaagt
gccatgttataggtaggtcaggactggaaatgtatatggatgccacagca
tgtcacagaatggaagcttaggtttgtctccatctttcagtattcacaga
catgttcctttattcctttgaaagtgtatacagtactgacctgccacact
gaacctccacattaaatatggctaacaccagatgaataaataaaacagac
tcaatagtttaattcctttcaagttatttacagaaaaataataccatata
gaacttacatatatttacttttaaaaactggatatcaccaagttcttttg
tatgaataatcactaagctatatttataaaagtaatttatattaattaat
atttagattcaacatttataaaattttaatccttttaaaactatcaaatt
ttatgttgatgctttctgtaaattaaataaagcagagggatgaatatgga
caagaacaatctaaaataagattttgaattttattaaaaatacataaatt
acattaaaatacaaaatagtttgtgctataattattttatggattctcag
tgttgtctatctctagccattcatatctctaagactttataccatagaac
tagttaaagtgaaggagggcaatcaaaagagtctccttgttttcatagaa
accagcacaggcatgcctctgcagatgtgacagatgagaccagtcctggt
ttcccaggtcttcccatttagtgatcagtgctgaagacggtctgctgtag
aatattttgtcagtgtgttatttaatgcacacatctgttttcagttgtgg
tgtgattaagccatagcaagtacctttaatccaatagctttctctttatc
gtatacagattaaataaagtcaccatagatcagagtgagcaaacagtcag
ttaatagggagtgacatagggcaaatcatggagagtagtgggagttattt
aatagaaagtgcacggagtagaatgagggcattgagactggaggcttttt
gccatggagaagaagtcaattgtgaatttggatgcagag
gaattcacattgcagaagtcattaaaggttatagtgtattactgggttaa
gcagggcacataacaaatgacagatttatcttccagaccacatatattct
tctttatttgtttttttaatttgaaaaaaaattactactctttattttgt
ttttagtgttcagttgttatccccttcctggtctgctctttaaaagtttc
tgtcttagtcagggtttctattcctggacaaaacatcatgaccaagaagc
aagttgtggagaaaagggtttatttggcttatacttccatattgctgttc
atcacaaaaggaagtcgggactggaactcaagcaggtcagaaagcaggag
ctgatgcagaggtcatggagggatgttctttactggcttgcttcccctgg
cttgctcagcctgctctcttatagaaccaagactaccagcccagagatgg
ccccacccacaaggggccattccccttgatcactaattgagaaaatgcct
tacagtaggatctcatggaggcatttcctcaactgaatctcctctctctg
tgataactccagctgtgtcaagttgacactaaactagccagtacaattaa
ccccttgtcaacttgacacacaaacacatcattagtaagcctcaaccttc
acattcttattcatcccaaggtctaaataactttaaacatcccacatatt
cttaaaagttcaatctctttaaaatatccatcccttttaaaatccaaagt
ctttttacaattaaaagtctcttaactgtgggctctaataaaacagtttc
ttccttcaagagggaaaatatcagggcacagtcacaatcaaaaccaaaaa
tcaatctccaaccgtccaatgtctgggatccaactcacaatcttctgggc
tccgccaagggcttgggtcacttctccagccatgccctttgtagcaccat
gtgtcgtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115687939_115689090
seq2: B6Ng01-193M23.b_45_1183 (reverse)

seq1  CTCTGCATCCAAAATCACAAAATGAACTTCTTCTCCATGCCAAAAAACCC  50
      ||||||||||||| ||||  |||  |||||||||||||| | ||||| ||
seq2  CTCTGCATCCAAATTCAC--AATTGACTTCTTCTCCATGGC-AAAAAGCC  47

seq1  TCCAGTCTCAATGCCCCTCCCTTCTACTTCCCGTGCACCTCTCTA-TAAA  99
      ||||||||||||||||   | |||||||  ||||||| || |||| ||||
seq2  TCCAGTCTCAATGCCC--TCATTCTACT--CCGTGCA-CTTTCTATTAAA  92

seq1  T-ACTCCACTTACTCTCCATGATTTTGCCCTATGTTCACTCCCTATTAAC  148
      | |||||   |||||||||||| ||||||||||| |||||||||||||||
seq2  TAACTCCCACTACTCTCCATGA-TTTGCCCTATG-TCACTCCCTATTAAC  140

seq1  TGACTGTTTGCTCCACCTCTTGATCTATGGTTGACTTTATTTAATTCTGT  198
      |||||||||||||   ||| |||||||||| ||||||||||||| |||||
seq2  TGACTGTTTGCTC--ACTC-TGATCTATGG-TGACTTTATTTAA-TCTGT  185

seq1  ATACGATAAAGAGAAAGCTATTGGATTAAAGGTACTTGCTATGGCTTAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGATAAAGAGAAAGCTATTGGATTAAAGGTACTTGCTATGGCTTAAT  235

seq1  CACACCACAACTGAAAACAGATGTGTGCATTAAATAACACACTGACAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACAACTGAAAACAGATGTGTGCATTAAATAACACACTGACAAAA  285

seq1  TATTCTACAGCAGACCGTCTTCAGCACTGATCACTAAATGGGAAGACCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACAGCAGACCGTCTTCAGCACTGATCACTAAATGGGAAGACCTG  335

seq1  GGAAACCAGGACTGGTCTCATCTGTCACATCTGCAGAGGCATGCCTGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAGGACTGGTCTCATCTGTCACATCTGCAGAGGCATGCCTGTGC  385

seq1  TGGTTTCTATGAAAACAAGGAGACTCTTTTGATTGCCCTCCTTCACTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTATGAAAACAAGGAGACTCTTTTGATTGCCCTCCTTCACTTTA  435

seq1  ACTAGTTCTATGGTATAAAGTCTTAGAGATATGAATGGCTAGAGATAGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTATGGTATAAAGTCTTAGAGATATGAATGGCTAGAGATAGAC  485

seq1  AACACTGAGAATCCATAAAATAATTATAGCACAAACTATTTTGTATTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGAATCCATAAAATAATTATAGCACAAACTATTTTGTATTTTA  535

seq1  ATGTAATTTATGTATTTTTAATAAAATTCAAAATCTTATTTTAGATTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTATGTATTTTTAATAAAATTCAAAATCTTATTTTAGATTGTT  585

seq1  CTTGTCCATATTCATCCCTCTGCTTTATTTAATTTACAGAAAGCATCAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCATATTCATCCCTCTGCTTTATTTAATTTACAGAAAGCATCAAC  635

seq1  ATAAAATTTGATAGTTTTAAAAGGATTAAAATTTTATAAATGTTGAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTGATAGTTTTAAAAGGATTAAAATTTTATAAATGTTGAATCT  685

seq1  AAATATTAATTAATATAAATTACTTTTATAAATATAGCTTAGTGATTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAATTAATATAAATTACTTTTATAAATATAGCTTAGTGATTATT  735

seq1  CATACAAAAGAACTTGGTGATATCCAGTTTTTAAAAGTAAATATATGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAAGAACTTGGTGATATCCAGTTTTTAAAAGTAAATATATGTAA  785

seq1  GTTCTATATGGTATTATTTTTCTGTAAATAACTTGAAAGGAATTAAACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATGGTATTATTTTTCTGTAAATAACTTGAAAGGAATTAAACTA  835

seq1  TTGAGTCTGTTTTATTTATTCATCTGGTGTTAGCCATATTTAATGTGGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGTTTTATTTATTCATCTGGTGTTAGCCATATTTAATGTGGAG  885

seq1  GTTCAGTGTGGCAGGTCAGTACTGTATACACTTTCAAAGGAATAAAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTGGCAGGTCAGTACTGTATACACTTTCAAAGGAATAAAGGAA  935

seq1  CATGTCTGTGAATACTGAAAGATGGAGACAAACCTAAGCTTCCATTCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTGAATACTGAAAGATGGAGACAAACCTAAGCTTCCATTCTGT  985

seq1  GACATGCTGTGGCATCCATATACATTTCCAGTCCTGACCTACCTATAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTGTGGCATCCATATACATTTCCAGTCCTGACCTACCTATAACA  1035

seq1  TGGCACTTCTATATTTATTGTGGGTGAGATTCAGTAGGAAAAGTCTTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTCTATATTTATTGTGGGTGAGATTCAGTAGGAAAAGTCTTAAA  1085

seq1  ATATTCTCTCAATGAGTAAAGATGGTCAGATCCTATGTTTCAATTGAGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTCAATGAGTAAAGATGGTCAGATCCTATGTTTCAATTGAGGA  1135

seq1  ATTC  1152
      ||||
seq2  ATTC  1139

seq1: chr12_115549503_115550146
seq2: B6Ng01-193M23.g_62_705

seq1  GAATTCACATTGCAGAAGTCATTAAAGGTTATAGTGTATTACTGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGCAGAAGTCATTAAAGGTTATAGTGTATTACTGGGTTAA  50

seq1  GCAGGGCACATAACAAATGACAGATTTATCTTCCAGACCACATATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCACATAACAAATGACAGATTTATCTTCCAGACCACATATATTCT  100

seq1  TCTTTATTTGTTTTTTTAATTTGAAAAAAAATTACTACTCTTTATTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTGTTTTTTTAATTTGAAAAAAAATTACTACTCTTTATTTTGT  150

seq1  TTTTAGTGTTCAGTTGTTATCCCCTTCCTGGTCTGCTCTTTAAAAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTCAGTTGTTATCCCCTTCCTGGTCTGCTCTTTAAAAGTTTC  200

seq1  TGTCTTAGTCAGGGTTTCTATTCCTGGACAAAACATCATGACCAAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGTCAGGGTTTCTATTCCTGGACAAAACATCATGACCAAGAAGC  250

seq1  AAGTTGTGGAGAAAAGGGTTTATTTGGCTTATACTTCCATATTGCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGGAGAAAAGGGTTTATTTGGCTTATACTTCCATATTGCTGTTC  300

seq1  ATCACAAAAGGAAGTCGGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAAGGAAGTCGGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAG  350

seq1  CTGATGCAGAGGTCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGAGGTCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGG  400

seq1  CTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGG  450

seq1  CCCCACCCACAAGGGGCCATTCCCCTTGATCACTAATTGAGAAAATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCACAAGGGGCCATTCCCCTTGATCACTAATTGAGAAAATGCCT  500

seq1  TACAGTAGGATCTCATGGAGGCATTTCCTCAACTGAATCTCCTCTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGGATCTCATGGAGGCATTTCCTCAACTGAATCTCCTCTCTCTG  550

seq1  TGATAACTCCAGCTGTGTCAAGTTGACACTAAACTAGCCAGTACAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTCCAGCTGTGTCAAGTTGACACTAAACTAGCCAGTACAATTAA  600

seq1  CCCCTTGTCAACTTGACACACAAACACATCATTAGTAAGCCTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTCAACTTGACACACAAACACATCATTAGTAAGCCTCA  644