BAC Information

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BAC

Clone NameB6Ng01-194E02
Chromosome12 (Build37)
Map Location 116,555,199 - 116,556,345
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58
Downstream geneEG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194E02.bB6Ng01-194E02.g
ACCGA017001GA017002
length1,1371,186
definitionB6Ng01-194E02.b B6Ng01-194E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagagactctaggtgcaggcacagagccagaaccatttcaaca
cagataaaatccccaagttaggagaaggaaatggacacaggacctcagcc
ctaaacaagaactgcaattgacacttacatgtaaatgaataattagtttt
ttccagtgcctcacagggaatgttaagcacagttaactataaggatatga
ttagcacttgataaccaaaaaaaaaattccttgtaaaactccttttatct
cacttatgttttgcccatatatcatggctacagacttgtggttcttctct
ctctctgtctctgtttgtctcattagatagtgttaacatttgatattcca
acttattatatatgaaaaggcccatacaaatgaacaaaagtaattatact
tcgaaaatatttgtacataaaggattattgcagaagcattataactaaat
tatgtaaagaaaatatgtaactttcaaaagaagattacatcaagaagaca
cacacggacacataaaatacacacacacacacatttgcacatttttcatc
agaaaggaataaaatacttatgttaattttagtaaaatggatgcaactcg
agattattatattaattatggttatattagaaacataaacattgaatgaa
tctctcagttgttcttatatactgcactcttatattgaattatgcataca
tatacatatgatgtttaaatgaaattgtctactatagtaaagtaaaaaat
aagagcaagaaaaagaaagatatagattatggggaaaatattcacagtgt
acacaatacacttgtataaaagttctaaacatataaaaatgatatattta
caaaattatctttgttctttgcaattttcattcataaatgaaatatacaa
tgatcacatctacctcaactatttctttctggtgtctgttgggacctttt
aatatgtctctcttccaacatccaggtctatttatttcattaactatata
tagcatgtacattatgctatttatatacatatagtgagtcatcatagtac
aataggaaacctaacaaaaacattcaaaatgtgaataaaattcccatgat
catcaaatgtcataaaccctcatgatgagtgtgagtc
gaattctcacctgaggaataccaaatggcaaagaagcatctgaaaaaatg
ttcaaaatccttaatcatcagggaaatgcaaatcaaaacaacccagagat
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagt
agatgctgtcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaagcttgtacgaacactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaggatcctccaataagtctcctgagc
atatatccagaagataccgcaaccagtaaaaaggacacatgctccactat
gttcatagcagccttatttataatagccaaaagctggaaagaactcagat
gcccctcaacagatgaatggatacagaaaatgtggtacatttgcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtaaggtaacagaatcacaaa
aaactcacacaatatgtattcactgataagtggatattagcccaaaactt
aggatactcaacatataagatacaatttgctaaatgcatgaaactcaata
agaattaagaccaaagtgtggacactgtgccccttcttagaattgggagc
aaaacacccatggaagtagttacagagacaaagtttggagctgttacaaa
aggatggaccatctagagactcccatatccagggatccaccccataatca
gcttccaaacgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgccagggcctagcaacac
agaagtggatgctcacagtcagctattggatggatcacagggcccccaat
ggaggagctagagaaagtacccaagagctaaaggatctgtaccctatagg
tggaacacattatgactaaccagtaccctggattctgactctagctgcat
atgtatcaaagatggcctagtcgcatcactgaagagagcccatggaactc
actaacctgtatatgtccagtacggtatccaggtccaaaattggaatggc
ggcaggacgttagtgtacgtctactggcgaactgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116555199_116556345
seq2: B6Ng01-194E02.b_29_1165

seq1  GAATTCACAGAGACTCTAGGTGCAGGCACAGAGCCAGAACCATTTCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGACTCTAGGTGCAGGCACAGAGCCAGAACCATTTCAACA  50

seq1  CAGATAAAATCCCCAAGTTAGGAGAAGGAAATGGACACAGGACCTCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAATCCCCAAGTTAGGAGAAGGAAATGGACACAGGACCTCAGCC  100

seq1  CTAAACAAGAACTGCAATTGACACTTACATGTAAATGAATAATTAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAGAACTGCAATTGACACTTACATGTAAATGAATAATTAGTTTT  150

seq1  TTCCAGTGCCTCACAGGGAATGTTAAGCACAGTTAACTATAAGGATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGCCTCACAGGGAATGTTAAGCACAGTTAACTATAAGGATATGA  200

seq1  TTAGCACTTGATAACCAAAAAAAAAATTCCTTGTAAAACTCCTTTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTTGATAACCAAAAAAAAAATTCCTTGTAAAACTCCTTTTATCT  250

seq1  CACTTATGTTTTGCCCATATATCATGGCTACAGACTTGTGGTTCTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGTTTTGCCCATATATCATGGCTACAGACTTGTGGTTCTTCTCT  300

seq1  CTCTCTGTCTCTGTTTGTCTCATTAGATAGTGTTAACATTTGATATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTGTTTGTCTCATTAGATAGTGTTAACATTTGATATTCCA  350

seq1  ACTTATTATATATGAAAAGGCCCATACAAATGAACAAAAGTAATTATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTATATATGAAAAGGCCCATACAAATGAACAAAAGTAATTATACT  400

seq1  TCGAAAATATTTGTACATAAAGGATTATTGCAGAAGCATTATAACTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAATATTTGTACATAAAGGATTATTGCAGAAGCATTATAACTAAAT  450

seq1  TATGTAAAGAAAATATGTAACTTTCAAAAGAAGATTACATCAAGAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAGAAAATATGTAACTTTCAAAAGAAGATTACATCAAGAAGACA  500

seq1  CACACGGACACATAAAATACACACACACACACATTTGCACATTTTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGACACATAAAATACACACACACACACATTTGCACATTTTTCATC  550

seq1  AGAAAGGAATAAAATACTTATGTTAATTTTAGTAAAATGGATGCAACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAATAAAATACTTATGTTAATTTTAGTAAAATGGATGCAACTCG  600

seq1  AGATTATTATATTAATTATGGTTATATTAGAAACATAAACATTGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTATATTAATTATGGTTATATTAGAAACATAAACATTGAATGAA  650

seq1  TCTCTCAGTTGTTCTTATATACTGCACTCTTATATTGAATTATGCATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTTGTTCTTATATACTGCACTCTTATATTGAATTATGCATACA  700

seq1  TATACATATGATGTTTAAATGAAATTGTCTACTATAGTAAAGTAAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATGATGTTTAAATGAAATTGTCTACTATAGTAAAGTAAAAAAT  750

seq1  AAGAGCAAGAAAAAGAAAGATATAGATTATGGGGAAAATATTCACAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAGAAAAAGAAAGATATAGATTATGGGGAAAATATTCACAGTGT  800

seq1  ACACAATACACTTGTATAAAAGTTCTAAACATATAAAAATGATATATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATACACTTGTATAAAAGTTCTAAACATATAAAAATGATATATTTA  850

seq1  CAAAATTATCTTTGTTCTTTGCAATTTTCATTCATAAATGAAATATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATCTTTGTTCTTTGCAATTTTCATTCATAAATGAAATATACAA  900

seq1  TGATCACATCTACCTCAACTATTTCTTTCTGGTGTCTGTTGGGACCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACATCTACCTCAACTATTTCTTTCTGGTGTCTGTTGGGACCTTTT  950

seq1  AATATGTCTCTCTTCCAACATCCAGGTCTATTTTATTTCATTAACTAATA  1000
      |||||||||||||||||||||||||||||| ||||||||||||||||   
seq2  AATATGTCTCTCTTCCAACATCCAGGTCTA-TTTATTTCATTAACTA--T  997

seq1  ATATAGCATGTACAATTAATGCTATTTATATACATATAGGTGAGGTCATT  1050
      ||||||||||||||  | |||||||||||||||||||| |||| ||||| 
seq2  ATATAGCATGTACA--TTATGCTATTTATATACATATA-GTGA-GTCAT-  1042

seq1  CAATAGTAC-ATAGGAAACCTA--CAAAACATTCCAAAAATGTGATTAAA  1097
        ||||||| ||||||||||||   |||||||||  ||||||||| ||||
seq2  -CATAGTACAATAGGAAACCTAACAAAAACATTC--AAAATGTGAATAAA  1089

seq1  ATTCCCCATTGATCATCAAATGTCAATAAACCCTCATGATGA-TGTGAGT  1146
      ||||||   ||||||||||||||| ||||||||||||||||| |||||||
seq2  ATTCCC--ATGATCATCAAATGTC-ATAAACCCTCATGATGAGTGTGAGT  1136

seq1  C  1147
      |
seq2  C  1137