BAC Information

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BAC

Clone NameB6Ng01-195F09
Chromosome12 (Build37)
Map Location 69,331,828 - 69,475,441
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195F09.bB6Ng01-195F09.g
ACCGA017787GA017788
length1,108963
definitionB6Ng01-195F09.b B6Ng01-195F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,331,828 - 69,332,926)(69,474,516 - 69,475,441)
sequence
gaattccatacttagtattttctgagagcctcttgaccctacaacactgc
actgtcctcagagtctgctgagatcaaagccctctgacaggatatgtcaa
gaagagcaagatgtctcaaacagtgaaatgtccactcataaaaaagactg
gtagttggctcatccagtcctcgaatctccatagagaatttctaataaaa
attctggttcctttcactctgatatctgaaacccaattatatctataaat
tttaaaaataactagggtttggaataatctgaagtacagaagtacaaata
gagatacttttatgatattttaatctttttaatgatgtgtctgtgtaagt
ttgcacgtttgcataggtaggttcaggagttcatggaagacagaggagga
actatccaacccctggaactaaaatgtcagatggttgtgagctgccagaa
gcaggtgtttggaaacaaactcatttcccctggaatggcagtgagcactt
atcagataagccacccctccatcccccaaattactagtatttatatattt
tactgcactctgaaatttaattcccttttaaaagtttgctccaatttctt
aaactcttttcaaagatttctatcttcagtagtcatccagtactggagca
acacttagtgctcaaaaaataatttgaataaaatatattgaatgtcctat
gggaggaaaaaaaatctacattcccctgtagcctttgctccattctctgt
gtctcaatcaagtcacttgaattgcctctcactctccgaattccacactg
tatcaagtatcagtcacaggagatatatagtctggtaccatcaaatatca
aagaaaactcatttataggaaattaagggaagctggaattatttgtttag
gaacattttttaaaggccaatcatccagattgatatagattgataaatgt
tctttgcaatggagagtgtgatcctcgtactttcttacatttgatttctt
aaaggctacaggagtaaaacagcctgtctctaacataggcctccccacag
ccatgtgagaaatcactgagttcaaggcccagcttctgcttatttttgcc
gctcattt
gaattccaatgaagaattctttgtctatattcttcagggcgattagtcta
tatctacctgttttttgtttttatttatttatttatttggtattttcttc
atttatatttctaatgccatcccaaaagtcccccataccctttgttgtag
tgacagagtaatagtgaccttcttgggtgggtttgaaagacaacctttct
ctcagttttattttagtcagttgggaaggttgatatagtcctttgtttta
aatacatttcataatatttgtcagcaaagtgcccaagcctttagcctttc
tttgatgggaatgtatatatatacatatacattaagaaattccatttctt
tatgattcaactttcttaaggattatacatctagagatctattgttttta
gattatcaaactttttggtatataaccattcttagcattaaaaaaaattt
tatgtgtgtgagtacatttgtatgtgtgagagtagatatatttgggtgtc
tgtgtgtgcatgttgtggatgcctggggttgaagttggcaatgatccttg
attaaattttcactgtattcatggagtcagggtctcgtaatcaaatgtca
tgaaatgtatagtcctgttaaccagcttgttactatgataacttgtcttc
tgccttttgaggctgctactacagatgggccatttatgtctacttggcct
ttacttgggatcttgatctctgaattctcatactcactagacatacattt
tttttttatccaatggattatacatctagagatctattgtttttagatta
tcaacttttttggtatataaaccatttcttagcattaaaaaaatttttta
atttttaatctccttagcctagtttttcatagttatatttatggtggtcc
tttttatttgatgttactaaacttctgatgtccgcctttgtctggaattt
tacctaacccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_69331828_69332926
seq2: B6Ng01-195F09.b_42_1149

seq1  GAATTCCATACTTAGTATTTTCTGAGAGCCTCTTGACCCTACAACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTTAGTATTTTCTGAGAGCCTCTTGACCCTACAACACTGC  50

seq1  ACTGTCCTCAGAGTCTGCTGAGATCAAAGCCCTCTGACAGGATATGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCAGAGTCTGCTGAGATCAAAGCCCTCTGACAGGATATGTCAA  100

seq1  GAAGAGCAAGATGTCTCAAACAGTGAAATGTCCACTCATAAAAAAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAAGATGTCTCAAACAGTGAAATGTCCACTCATAAAAAAGACTG  150

seq1  GTAGTTGGCTCATCCAGTCCTCGAATCTCCATAGAGAATTTCTAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGCTCATCCAGTCCTCGAATCTCCATAGAGAATTTCTAATAAAA  200

seq1  ATTCTGGTTCCTTTCACTCTGATATCTGAAACCCAATTATATCTATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTCCTTTCACTCTGATATCTGAAACCCAATTATATCTATAAAT  250

seq1  TTTAAAAATAACTAGGGTTTGGAATAATCTGAAGTACAGAAGTACAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAACTAGGGTTTGGAATAATCTGAAGTACAGAAGTACAAATA  300

seq1  GAGATACTTTTATGATATTTTAATCTTTTTAATGATGTGTCTGTGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTTTTATGATATTTTAATCTTTTTAATGATGTGTCTGTGTAAGT  350

seq1  TTGCACGTTTGCATAGGTAGGTTCAGGAGTTCATGGAAGACAGAGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGTTTGCATAGGTAGGTTCAGGAGTTCATGGAAGACAGAGGAGGA  400

seq1  ACTATCCAACCCCTGGAACTAAAATGTCAGATGGTTGTGAGCTGCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAACCCCTGGAACTAAAATGTCAGATGGTTGTGAGCTGCCAGAA  450

seq1  GCAGGTGTTTGGAAACAAACTCATTTCCCCTGGAATGGCAGTGAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTTGGAAACAAACTCATTTCCCCTGGAATGGCAGTGAGCACTT  500

seq1  ATCAGATAAGCCACCCCTCCATCCCCCAAATTACTAGTATTTATATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAAGCCACCCCTCCATCCCCCAAATTACTAGTATTTATATATTT  550

seq1  TACTGCACTCTGAAATTTAATTCCCTTTTAAAAGTTTGCTCCAATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACTCTGAAATTTAATTCCCTTTTAAAAGTTTGCTCCAATTTCTT  600

seq1  AAACTCTTTTCAAAGATTTCTATCTTCAGTAGTCATCCAGTACTGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTTCAAAGATTTCTATCTTCAGTAGTCATCCAGTACTGGAGCA  650

seq1  ACACTTAGTGCTCAAAAAATAATTTGAATAAAATATATTGAATGTCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGTGCTCAAAAAATAATTTGAATAAAATATATTGAATGTCCTAT  700

seq1  GGGAGGAAAAAAAATCTACATTCCCCTGTAGCCTTTGCTCCATTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAAAAAATCTACATTCCCCTGTAGCCTTTGCTCCATTCTCTGT  750

seq1  GTCTCAATCAAGTCACTTGAATTGCCTCTCACTCTCCGAATTCCACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATCAAGTCACTTGAATTGCCTCTCACTCTCCGAATTCCACACTG  800

seq1  TATCAAGTATCAGTCACAGGAGATATATAGTCTGGTACCATCAAATATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTATCAGTCACAGGAGATATATAGTCTGGTACCATCAAATATCA  850

seq1  AAGAAAACACA-TTATAGGAAATT-AGGGAAGCTGGAA-TATTTGTTTAG  897
      |||||||| || |||||||||||| ||||||||||||| |||||||||||
seq2  AAGAAAACTCATTTATAGGAAATTAAGGGAAGCTGGAATTATTTGTTTAG  900

seq1  GAACATTTTTAAAAGG-CAATCATCCAGATTGATATAGATTGATAAATGT  946
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GAACATTTTTTAAAGGCCAATCATCCAGATTGATATAGATTGATAAATGT  950

seq1  T-TTTGCAATGGAGAGTGTTGATCTCTGTACTTTCTTACATTTGATTTCT  995
      | |||||||||||||||| |||||   |||||||||||||||||||||||
seq2  TCTTTGCAATGGAGAGTG-TGATCCTCGTACTTTCTTACATTTGATTTCT  999

seq1  T-AAGGCTACA-GAG-AAAACAGCCTGTCTCCAAACATA-GCCTCCCCAC  1041
      | ||||||||| ||| |||||||||||||| | |||||| ||||||||||
seq2  TAAAGGCTACAGGAGTAAAACAGCCTGTCT-CTAACATAGGCCTCCCCAC  1048

seq1  AAGCAAGTGAGAAATCACTGAGTTC-AGGCACAGC-TCTGCTTATTTTTG  1089
      |  || ||||||||||||||||||| |||| |||| ||||||||||||||
seq2  AGCCATGTGAGAAATCACTGAGTTCAAGGCCCAGCTTCTGCTTATTTTTG  1098

seq1  CGGCTCATTT  1099
      | ||||||||
seq2  CCGCTCATTT  1108

seq1: chr12_69474516_69475441
seq2: B6Ng01-195F09.g_71_1002 (reverse)

seq1  GACATCA-AAG-TTAGTAACATCAAAATAAAAAGGACCACCATAAATATA  48
      ||||||| ||| ||||||||||| ||||||||||||||||||||||||||
seq2  GACATCAGAAGTTTAGTAACATC-AAATAAAAAGGACCACCATAAATATA  49

seq1  ACTATGAAAAACTAGGCTAAGGAGATTAAAAATTAAAAAATTTTTTTAAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTATGAAAAACTAGGCTAAGGAGATTAAAAATTAAAAAATTTTTTT-AA  98

seq1  TGCTAAG-AATGG-TTATATACCAAAAAGTTTGATAATCTAAAAACAATA  146
      ||||||| ||||| ||||||||||||||  ||||||||||||||||||||
seq2  TGCTAAGAAATGGTTTATATACCAAAAAAGTTGATAATCTAAAAACAATA  148

seq1  GATCTCTAGATGTATAATCCATTGGATAAAAAAAAAATGTATGTCTAGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAGATGTATAATCCATTGGATAAAAAAAAAATGTATGTCTAGTG  198

seq1  AGTATGAGAA-TCAGAGATC-AGATCCCAAGTAAAGGCCAAGTAGACAT-  243
      |||||||||| ||||||||| |||||||||||||||||||||||||||| 
seq2  AGTATGAGAATTCAGAGATCAAGATCCCAAGTAAAGGCCAAGTAGACATA  248

seq1  AATGGCCCATCTGTAGTAGCAGCCTCAAAAGGCAG-AGACAAGTTATCAT  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGGCCCATCTGTAGTAGCAGCCTCAAAAGGCAGAAGACAAGTTATCAT  298

seq1  AGTAACAAGCTGGTTAACAGGACTATACATTTCATGACATTTGATTACGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAGCTGGTTAACAGGACTATACATTTCATGACATTTGATTACGA  348

seq1  GACCCTGACTCCATGAATACAGTGAAAATTTAATCAAGGATCATTGCCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACTCCATGAATACAGTGAAAATTTAATCAAGGATCATTGCCAA  398

seq1  CTTCAACCCCAGGCATCCACAACATGCACACACAGACACCCAAATATATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCCCAGGCATCCACAACATGCACACACAGACACCCAAATATATC  448

seq1  TACTCTCACACATACAAATGTACTCACACACATAAAATTTTTTTTAATGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCACACATACAAATGTACTCACACACATAAAATTTTTTTTAATGC  498

seq1  TAAGAATGGTTATATACCAAAAAGTTTGATAATCTAAAAACAATAGATCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGTTATATACCAAAAAGTTTGATAATCTAAAAACAATAGATCT  548

seq1  CTAGATGTATAATCCTTAAGAAAGTTGAATCATAAAGAAATGGAATTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTATAATCCTTAAGAAAGTTGAATCATAAAGAAATGGAATTTCT  598

seq1  TAATGTATATGTATATATATACATTCCCATCAAAGAAAGGCTAAAGGCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATATGTATATATATACATTCCCATCAAAGAAAGGCTAAAGGCTT  648

seq1  GGGCACTTTGCTGACAAATATTATGAAATGTATTTAAAACAAAGGACTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTTGCTGACAAATATTATGAAATGTATTTAAAACAAAGGACTAT  698

seq1  ATCAACCTTCCCAACTGACTAAAATAAAACTGAGAGAAAGGTTGTCTTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCTTCCCAACTGACTAAAATAAAACTGAGAGAAAGGTTGTCTTTC  748

seq1  AAACCCACCCAAGAAGGTCACTATTACTCTGTCACTACAACAAAGGGTAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACCCAAGAAGGTCACTATTACTCTGTCACTACAACAAAGGGTAT  798

seq1  GGGGGACTTTTGGGATGGCATTAGAAATATAAATGAAGAAAATACCAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTTTTGGGATGGCATTAGAAATATAAATGAAGAAAATACCAAAT  848

seq1  AAATAAATAAATAAAAACAAAAAACAGGTAGATATAGACTAATCGCCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAAAACAAAAAACAGGTAGATATAGACTAATCGCCCTG  898

seq1  AAGAATATAGACAAAGAATTCTTCATTGGAATTC  926
      ||||||||||||||||||||||||||||||||||
seq2  AAGAATATAGACAAAGAATTCTTCATTGGAATTC  932