BAC Information

Click to search

BAC

Clone NameB6Ng01-195L13
Chromosome12 (Build37)
Map Location 94,423,449 - 94,424,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195L13.bB6Ng01-195L13.g
ACCGA018062GA018063
length1,160298
definitionB6Ng01-195L13.b B6Ng01-195L13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatcaaaatcacaaagtaggttagtgggaaggagcatgcataga
gaccctattatttactctctgcttcttgccagctgtcctttctttccttg
taaagttttgtcctacctgcacttccagcccttgagcttcctattgatgt
tctgcctaatactccccttaaagaaacagcttgggagtgaagagtttgtt
cctcacctatagtccctgcatcacagcttctcacgctacatcatgtgaga
ggtatacatggcaaaggggaagaaccactagattctcttcgcagcttaag
ggttcacatgccatggggacagattgcatttaattgcttctcctactcag
actccatgaagtttctatagaactttatagatttaaattgtgcattttct
tttcttttcttttcttttcttttgggggctggtgggggacaggatctcac
agatcagcttagaacttgaatttgcttttaaaccaatgatgaccaaaact
cctcattattctgcctctgcctcccatccaactcttgaatgttttaatat
aacaacttatagacttcaagttagggagataacttaataagtaaagggtt
tgttgttcaagcatgtgagcctgagtttaatgtaaacacagaggaaacaa
agatggaaaggcccttgaagctcactttctagctactctagcctactgga
aaagtttcaggctaatgtgaaagtctgtatgtatgcagagcaacctggga
atagtgcttaatgttctctgaacttcatacatgtgtgggcatgcagcata
tgtgcatacccacgtatttttaaaaaatgtatgtatgtagaggcaataaa
acaaagaacaataatatggagattttcagtgcctaggaaggattaaaaaa
taaacaggaatgtaaattctttaagcaaagctatggcattgctaaggcaa
atcgaaacaaatacacagtggaactaaaactaacaatagtatacccttcc
ctaagtcaatttgtaggtcaacccatttaaatttatccccaactagctac
acattaaataagactcagacctatggttattttaatttggccttcacaat
acttgagtaaacccatattcctcatttctaactactaagtcttggctacc
ctccagcagt

ccacaattcaacttatagagcatatgaaactcaagaagaaggcaagatca
aaatgtgagtgcttctgtcctacttagaaggaggaacaacataatcatgg
gaagtagagggtgggaaggacttgggagggataaaggagggcgaggaaaa
aggggggcaggattaggtcggggaggagaaggtgtagatgtacagaggga
caggaaattgaacagaggtgtgtagcaatgggggatggggaactgaatgt
atcaactttgatgtccctaacttccttttatatgttttggctcctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_94423449_94424600
seq2: B6Ng01-195L13.b_46_1205 (reverse)

seq1  ACTGCTGGGAGGTAGCCAGG--CTAGTAGTTAGAAAAGGAGATTATGGG-  47
      ||||||||  |||||||| |   ||||||||||||| |  || |||||| 
seq2  ACTGCTGGAGGGTAGCCAAGACTTAGTAGTTAGAAATGAGGAATATGGGT  50

seq1  TTACCCCAGTAATTGTGAAAGCCAAA-TAAAATAACCATA-GTCTGAGTC  95
      |||| | ||| |||||||| |||||| ||||||||||||| |||||||||
seq2  TTACTCAAGT-ATTGTGAAGGCCAAATTAAAATAACCATAGGTCTGAGTC  99

seq1  TTATTT-ATGTGTAAGCTAGTTGGGGATAAATTTAAATTGGTTGAACTAC  144
      |||||| |||||| |||||||||||||||||||||||| |||||| ||||
seq2  TTATTTAATGTGT-AGCTAGTTGGGGATAAATTTAAATGGGTTGACCTAC  148

seq1  -AATTGACTTAGGGAAGGTATTACTAT--GTAGTTTTAGTTCCACTGTGT  191
       |||||||||||||||||   ||||||   ||||||||||||||||||||
seq2  AAATTGACTTAGGGAAGGGTATACTATTGTTAGTTTTAGTTCCACTGTGT  198

seq1  ATTTGTTTCGATTTGCCTTAGCAATGCCATAGCTTTGCTT-AAGAATTTA  240
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTGTTTCGATTTGCCTTAGCAATGCCATAGCTTTGCTTAAAGAATTTA  248

seq1  CATTCCTGTTTATTTTTTTAATCCTTCCTAGGCACTG-AAATCTCCATAT  289
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  CATTCCTGTTTA-TTTTTTAATCCTTCCTAGGCACTGAAAATCTCCATAT  297

seq1  TATTGTTCTTTGTTTTATTGCCTCTACATACATACATTTTTTAAAAATAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTTTGTTTTATTGCCTCTACATACATACATTTTTTAAAAATAC  347

seq1  GTGGGTATGCACATATGCTGCATGCCCACACATGTATGAAGTTCAGAGAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATGCACATATGCTGCATGCCCACACATGTATGAAGTTCAGAGAA  397

seq1  CATTAAGCACTATTCCCAGGTTGCTCTGCATACATACAGACTTTCACATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCACTATTCCCAGGTTGCTCTGCATACATACAGACTTTCACATT  447

seq1  AGCCTGAAACTTTTCCAGTAGGCTAGAGTAGCTAGAAAGTGAGCTTCAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAACTTTTCCAGTAGGCTAGAGTAGCTAGAAAGTGAGCTTCAAG  497

seq1  GGCCTTTCCATCTTTGTTTCCTCTGTGTTTACATTAAACTCAGGCTCACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCCATCTTTGTTTCCTCTGTGTTTACATTAAACTCAGGCTCACA  547

seq1  TGCTTGAACAACAAACCCTTTACTTATTAAGTTATCTCCCTAACTTGAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAACAACAAACCCTTTACTTATTAAGTTATCTCCCTAACTTGAAG  597

seq1  TCTATAAGTTGTTATATTAAAACATTCAAGAGTTGGATGGGAGGCAGAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGTTGTTATATTAAAACATTCAAGAGTTGGATGGGAGGCAGAGG  647

seq1  CAGAATAATGAGGAGTTTTGGTCATCATTGGTTTAAAAGCAAATTCAAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATGAGGAGTTTTGGTCATCATTGGTTTAAAAGCAAATTCAAGT  697

seq1  TCTAAGCTGATCTGTGAGATCCTGTCCCCCACCAGCCCCCAAAAGAAAAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTGATCTGTGAGATCCTGTCCCCCACCAGCCCCCAAAAGAAAAG  747

seq1  AAAAGAAAAGAAAAGAAAATGCACAATTTAAATCTATAAAGTTCTATAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAATGCACAATTTAAATCTATAAAGTTCTATAGA  797

seq1  AACTTCATGGAGTCTGAGTAGGAGAAGCAATTAAATGCAATCTGTCCCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATGGAGTCTGAGTAGGAGAAGCAATTAAATGCAATCTGTCCCCA  847

seq1  TGGCATGTGAACCCTTAAGCTGCGAAGAGAATCTAGTGGTTCTTCCCCTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTGAACCCTTAAGCTGCGAAGAGAATCTAGTGGTTCTTCCCCTT  897

seq1  TGCCATGTATACCTCTCACATGATGTAGCGTGAGAAGCTGTGATGCAGGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTATACCTCTCACATGATGTAGCGTGAGAAGCTGTGATGCAGGG  947

seq1  ACTATAGGTGAGGAACAAACTCTTCACTCCCAAGCTGTTTCTTTAAGGGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGTGAGGAACAAACTCTTCACTCCCAAGCTGTTTCTTTAAGGGG  997

seq1  AGTATTAGGCAGAACATCAATAGGAAGCTCAAGGGCTGGAAGTGCAGGTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGGCAGAACATCAATAGGAAGCTCAAGGGCTGGAAGTGCAGGTA  1047

seq1  GGACAAAACTTTACAAGGAAAGAAAGGACAGCTGGCAAGAAGCAGAGAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAACTTTACAAGGAAAGAAAGGACAGCTGGCAAGAAGCAGAGAGT  1097

seq1  AAATAATAGGGTCTCTATGCATGCTCCTTCCCACTAACCTACTTTGTGAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAGGGTCTCTATGCATGCTCCTTCCCACTAACCTACTTTGTGAT  1147

seq1  TTTGATTGAATTC  1152
      |||||||||||||
seq2  TTTGATTGAATTC  1160


| Home | SequenceCutter | Blast | Download |