BAC Information

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BAC

Clone NameB6Ng01-196H08
Chromosome12 (Build37)
Map Location 115,361,579 - 115,448,425
singlet/doubletdoublet
Overlap geneIgh, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438
Upstream geneMta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818
Downstream geneIghv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H08.bB6Ng01-196H08.g
ACCGA018594GA018595
length1,2041,126
definitionB6Ng01-196H08.b B6Ng01-196H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,361,579 - 115,362,772)(115,447,299 - 115,448,425)
sequence
gaattcactacaatggactgtctgttttcatcaggatctgctatgggaaa
aatggagcaggcctttgcccacaatgccactagaagtccatctttgtact
cccatctacaattatgaccatgcctgctacccatcaagccaagaacaatc
atcatggaaccggcaagagcttccatttttatcctaggctctaagctaga
tcctgtccatagactctcactgtgttctcaggtcttccccaactctcaga
gtcatgtggattccaagagcctaagaaacccatagttcagtcttgttgct
ggcccagggacccctgagccatctccagcattcccaagtctcagactgtg
ctttcccaccactgtgtggtgccttggtgcttccctacaacccaacattt
accaggaagtatgggataattgcagtcaaactccatgaaacttgcttccc
aagcatccatgtacctgaaccgacatgtgatccataacccagccatgtca
tgggaaggatcttcagtaggttttttgttccggaaaaggaaaccacggat
tgtgatatcaattctgccttaaaatttttcacactagaaatatgacatga
tttcacttatttataacaaaaactgcaatctctcagaggacatgtgaatt
agttctcactaaatactagaaagcttgaagaggtggcagtgaaataaaag
tgtcattgtgtgttgaggctggccggcagctcatatgtctgggtttgagc
ctggaagacatcttggaatctggaagaaaagaggtaatctaggcggatcg
agaaaggatttgagctaagacaagattctgatcaaagctcaattttaata
ttcaggaaactctggcttataaagaaggggggacgagcccattcctgcca
aatcatcttcagagtccagctgcaggtgaccacgtgtatactctggaaca
gctaagtggcaggtagtagcagtggggactggcagaacaataggggtggc
aaggctccacccctggatgatcccctgggtgataataattcaaggctgtt
cagcctgattttggggcttccctggtgtaatataaaaaagaaagtctggg
gttggaggaaataacattattttatgctggataggttctgccctgagtcc
taaggttctattgaagaaatcctgttctcagtgattctaactttctcata
gtaa
gaattcctaaggggctgcagccaccatcatacctaagcccaaggaaccca
ttgctaatttactaggaaactacaaatgattgtggcaaaagtattaaaat
aactagaaagaaatgcttcacgtagatgtctctctgtctctgcctctgcc
tctttctgtctctctttctcacaaacacaccacacacacacaggcagaca
cacacacacacacacacacacacagaaacacacacactaacaccatgaaa
ataacaggacctaacattcattggtcatgattatttttcaacatcagttt
tcacaattaaccaataaaaatgacacaggctaacagagtggatgcataaa
ggatatacttcattctgctgcatataagaaacataccttggtaactatga
taaacaatacttcagaataaagtttttttttctcttagggagaagaacta
ggaaactgttctcttaccaggagaaggtcatcactgatcaaagacattaa
aaatacagttgtggaagaatgtcagtggtgacattgggtgagaaggtaga
ggtgaggtcatgccaagatttgttccctctgatcccaacagtcctcaatt
tctcttgttccagacttacactataggaagccaaagaccaggatgcctag
attgtaataactaaatgacgtcactatccaacttccccaagtattaaggc
aagggaatctccccatatggatatgcatctcaagaaacatccacaaatga
gttcctcctgcctctgaattctgtaaccactgagggcactgtcatgtatt
actgtgtagaatacacaggaggaaaacttcattgtgatctcagagacaga
gatcccagtagaggagctctggaccctagaaggcactgagcttgcaccta
gcccaggaatgctacttcagatcacagaaagataaaggggtgttttcatt
tgcttatatgattgattgattgattctgttgtttgttttgggtttgtttg
actgtgcttctcatcttactattgggcagcgaggtttcagtgatttcttc
ttattctgtcatgaaaatactgtgtttggctaaatccataatgtatattt
ttcactgggtccctcagattgttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115361579_115362772
seq2: B6Ng01-196H08.b_33_1236

seq1  GAATTCACTACAATGGACTGTCTGTTTTCATCAGGATCTGCTATGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACAATGGACTGTCTGTTTTCATCAGGATCTGCTATGGGAAA  50

seq1  AATGGAGCAGGCCTTTGCCCACAATGCCACTAGAAGTCCATCTTTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCAGGCCTTTGCCCACAATGCCACTAGAAGTCCATCTTTGTACT  100

seq1  CCCATCTACAATTATGACCATGCCTGCTACCCATCAAGCCAAGAACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTACAATTATGACCATGCCTGCTACCCATCAAGCCAAGAACAATC  150

seq1  ATCATGGAACCGGCAAGAGCTTCCATTTTTATCCTAGGCTCTAAGCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAACCGGCAAGAGCTTCCATTTTTATCCTAGGCTCTAAGCTAGA  200

seq1  TCCTGTCCATAGACTCTCACTGTGTTCTCAGGTCTTCCCCAACTCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCATAGACTCTCACTGTGTTCTCAGGTCTTCCCCAACTCTCAGA  250

seq1  GTCATGTGGATTCCAAGAGCCTAAGAAACCCATAGTTCAGTCTTGTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGGATTCCAAGAGCCTAAGAAACCCATAGTTCAGTCTTGTTGCT  300

seq1  GGCCCAGGGACCCCTGAGCCATCTCCAGCATTCCCAAGTCTCAGACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGGACCCCTGAGCCATCTCCAGCATTCCCAAGTCTCAGACTGTG  350

seq1  CTTTCCCACCACTGTGTGGTGCCTTGGTGCTTCCCTACAACCCAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACCACTGTGTGGTGCCTTGGTGCTTCCCTACAACCCAACATTT  400

seq1  ACCAGGAAGTATGGGATAATTGCAGTCAAACTCCATGAAACTTGCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGTATGGGATAATTGCAGTCAAACTCCATGAAACTTGCTTCCC  450

seq1  AAGCATCCATGTACCTGAACCGACATGTGATCCATAACCCAGCCATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCATGTACCTGAACCGACATGTGATCCATAACCCAGCCATGTCA  500

seq1  TGGGAAGGATCTTCAGTAGGTTTTTTGTTCCGGAAAAGGAAACCACGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGATCTTCAGTAGGTTTTTTGTTCCGGAAAAGGAAACCACGGAT  550

seq1  TGTGATATCAATTCTGCCTTAAAATTTTTCACACTAGAAATATGACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATCAATTCTGCCTTAAAATTTTTCACACTAGAAATATGACATGA  600

seq1  TTTCACTTATTTATAACAAAAACTGCAATCTCTCAGAGGACATGTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTATTTATAACAAAAACTGCAATCTCTCAGAGGACATGTGAATT  650

seq1  AGTTCTCACTAAATACTAGAAAGCTTGAAGAGGTGGCAGTGAAATAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCACTAAATACTAGAAAGCTTGAAGAGGTGGCAGTGAAATAAAAG  700

seq1  TGTCATTGTGTGTTGAGGCTGGCCGGCAGCTCATATGTCTGGGTTTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTGTGTTGAGGCTGGCCGGCAGCTCATATGTCTGGGTTTGAGC  750

seq1  CTGGAAGACATCTTGGAATCTGGAAGAAAAGAGGTAATCTAGGCGGATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGACATCTTGGAATCTGGAAGAAAAGAGGTAATCTAGGCGGATCG  800

seq1  AGAAAGGA-TTGAGCTAAGACAAGATTCTGATCAAAGCTCAATTTTAATA  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATTTGAGCTAAGACAAGATTCTGATCAAAGCTCAATTTTAATA  850

seq1  TTCA-GAAACTCTGGCTTATAAAGAA-GGGGGACGAGCCCATTCCTGCCA  897
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAGGAAACTCTGGCTTATAAAGAAGGGGGGACGAGCCCATTCCTGCCA  900

seq1  AATCATCTTCAGAGTCCAGCTGCAGGTGACCACGTGTATACTCTGGAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTTCAGAGTCCAGCTGCAGGTGACCACGTGTATACTCTGGAACA  950

seq1  GCTAAGTGGCAGGTAGTAGCAGT-GGGACTGGCAGAACAATA-GGGTGGC  995
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GCTAAGTGGCAGGTAGTAGCAGTGGGGACTGGCAGAACAATAGGGGTGGC  1000

seq1  -AGGCTCCACCCCT-GATGATCCCCT-GGTGATAAT-ATTCAAGCCTGTT  1041
       ||||||||||||| ||||||||||| ||||||||| ||||||| |||||
seq2  AAGGCTCCACCCCTGGATGATCCCCTGGGTGATAATAATTCAAGGCTGTT  1050

seq1  CAGCCTGATTTTGGGCTTTCCCTGTTGTTAATATAAAAAAGAAAGTCTGG  1091
      |||||||||||||||  ||||||| || ||||||||||||||||||||||
seq2  CAGCCTGATTTTGGGGCTTCCCTGGTG-TAATATAAAAAAGAAAGTCTGG  1099

seq1  G--TTGAGG-AATAACATTTATTTATGCTGTATA-GTTCTG-CCTGAATT  1136
      |  | |||| |||||||||  ||||||||| ||| |||||| ||||| | 
seq2  GGTTGGAGGAAATAACATTATTTTATGCTGGATAGGTTCTGCCCTGAGTC  1149

seq1  CTTAGGGTCTAATGAAGAAA-CCTG-TCTCAGTGGTATTCCCTAACTTTT  1184
      || ||| |||| |||||||| |||| ||||||||  |||  ||||| |||
seq2  CTAAGGTTCTATTGAAGAAATCCTGTTCTCAGTG--ATT--CTAAC-TTT  1194

seq1  CTCATAGTAA  1194
      ||||||||||
seq2  CTCATAGTAA  1204

seq1: chr12_115447299_115448425
seq2: B6Ng01-196H08.g_62_1187 (reverse)

seq1  AGGAACAATCTTGAGGGACACAGTGAAAAAATAAACATAATGGAATTTAG  50
      |||||||||| |||||||| ||||| ||||||| |||| |||| ||||||
seq2  AGGAACAATC-TGAGGGACCCAGTG-AAAAATATACATTATGG-ATTTAG  47

seq1  CAAAACACAGTA-TTTCATGAACAG-ATA--GAGAAATCACCTGAAACCT  96
      | |||||||||| ||||||| |||| |||   |||||||| |||||||||
seq2  CCAAACACAGTATTTTCATG-ACAGAATAAGAAGAAATCA-CTGAAACCT  95

seq1  CGCTG-CCAATAGTAAGATGAGAAGCACAGTCAAAACAAAACCAAAACAA  145
      ||||| |||||||||||||||||||||||||| ||||||| |||||||||
seq2  CGCTGCCCAATAGTAAGATGAGAAGCACAGTC-AAACAAACCCAAAACAA  144

seq1  ACAACAGAATCAATCAATCAATCATATAAGCAAATGAAAACACCCCTTTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAATCAATCAATCAATCATATAAGCAAATGAAAACACCCCTTTA  194

seq1  TCTTTCTGTGATCTGAAGTAGCATTCCTGGGCTAGGTGCAAGCTCAGTGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTGATCTGAAGTAGCATTCCTGGGCTAGGTGCAAGCTCAGTGC  244

seq1  CTTCTAGGGTCCAGAGCTCCTCTACTGGGATCTCTGTCTCTGAGATCACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGGTCCAGAGCTCCTCTACTGGGATCTCTGTCTCTGAGATCACA  294

seq1  ATGAAGTTTTCCTCCTGTGTATTCTACACAGTAATACATGACAGTGCCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTTCCTCCTGTGTATTCTACACAGTAATACATGACAGTGCCCT  344

seq1  CAGTGGTTACAGAATTCAGAGGCAGGAGGAACTCATTTGTGGATGTTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTACAGAATTCAGAGGCAGGAGGAACTCATTTGTGGATGTTTCT  394

seq1  TGAGATGCATATCCATATGGGGAGATTCCCTTGCCTTAATACTTGGGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCATATCCATATGGGGAGATTCCCTTGCCTTAATACTTGGGGAA  444

seq1  GTTGGATAGTGACGTCATTTAGTTATTACAATCTAGGCATCCTGGTCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATAGTGACGTCATTTAGTTATTACAATCTAGGCATCCTGGTCTTT  494

seq1  GGCTTCCTATAGTGTAAGTCTGGAACAAGAGAAATTGAGGACTGTTGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTATAGTGTAAGTCTGGAACAAGAGAAATTGAGGACTGTTGGGA  544

seq1  TCAGAGGGAACAAATCTTGGCATGACCTCACCTCTACCTTCTCACCCAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGAACAAATCTTGGCATGACCTCACCTCTACCTTCTCACCCAAT  594

seq1  GTCACCACTGACATTCTTCCACAACTGTATTTTTAATGTCTTTGATCAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACTGACATTCTTCCACAACTGTATTTTTAATGTCTTTGATCAGT  644

seq1  GATGACCTTCTCCTGGTAAGAGAACAGTTTCCTAGTTCTTCTCCCTAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTTCTCCTGGTAAGAGAACAGTTTCCTAGTTCTTCTCCCTAAGA  694

seq1  GAAAAAAAAACTTTATTCTGAAGTATTGTTTATCATAGTTACCAAGGTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACTTTATTCTGAAGTATTGTTTATCATAGTTACCAAGGTAT  744

seq1  GTTTCTTATATGCAGCAGAATGAAGTATATCCTTTATGCATCCACTCTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATATGCAGCAGAATGAAGTATATCCTTTATGCATCCACTCTGT  794

seq1  TAGCCTGTGTCATTTTTATTGGTTAATTGTGAAAACTGATGTTGAAAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTGTCATTTTTATTGGTTAATTGTGAAAACTGATGTTGAAAAAT  844

seq1  AATCATGACCAATGAATGTTAGGTCCTGTTATTTTCATGGTGTTAGTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGACCAATGAATGTTAGGTCCTGTTATTTTCATGGTGTTAGTGTG  894

seq1  TGTGTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCCTGTGTGTGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCCTGTGTGTGTG  944

seq1  TGGTGTGTTTGTGAGAAAGAGAGACAGAAAGAGGCAGAGGCAGAGACAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTTGTGAGAAAGAGAGACAGAAAGAGGCAGAGGCAGAGACAGA  994

seq1  GAGACATCTACGTGAAGCATTTCTTTCTAGTTATTTTAATACTTTTGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTACGTGAAGCATTTCTTTCTAGTTATTTTAATACTTTTGCCA  1044

seq1  CAATCATTTGTAGTTTCCTAGTAAATTAGCAATGGGTTCCTTGGGCTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTTGTAGTTTCCTAGTAAATTAGCAATGGGTTCCTTGGGCTTAG  1094

seq1  GTATGATGGTGGCTGCAGCCCCTTAGGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  GTATGATGGTGGCTGCAGCCCCTTAGGAATTC  1126