BAC Information

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BAC

Clone NameB6Ng01-196I01
Chromosome12 (Build37)
Map Location 14,651,756 - 14,779,140
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
Downstream geneMap1lc3-ps7, LOC668492, LOC100042426, LOC217409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196I01.bB6Ng01-196I01.g
ACCGA018627GA018628
length1,1751,084
definitionB6Ng01-196I01.b B6Ng01-196I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,651,756 - 14,652,940)(14,778,029 - 14,779,140)
sequence
gaattccactgaggccctgggatgccaggagagacacactgtctctcctc
tgggctcatgagattattttgttcagacactagttattacagggagtagc
tgggccaactgcttttacctgcagttacatagtgagcatacaagatttta
tatatctaactgtctctctatatctatattcagaaaagaccaaaaattcc
tacaaaaactaatttcttgacgataaaattcctcctgggttagcataaat
agaattaactaccaaattagctaaattctggttcaaagtcatggttcaaa
tgagcatttaataagctcgctctcttttcagaaacgactcattgattttt
ttttccccagaatgagattaagtattcattttaaaaacataactaaacca
gaaacaagcattttctttttaagttactgtgtaaactatgtaacaaaact
atattggaaatcaaaacagcattaaaatgtcaactatatctagccaatct
tattagaccaaataattgtgttttacaatggtctgaaaacttgtaggatt
taaagagaaaaactagacaaagaatatttagtcttcatctttgttaagca
tttcaactatctgaagagaatctgaatttaattgaaaccccaaaataatc
atatattatattatatgtcataaaaagtaacatgcagcaatttctatgaa
atcataattttttaagagcacaaaactggtctcattattagcactcatgt
aacaaaactgaggtatagcagaggcttctgcattgtctcaaaaataccag
ggatagagcccagatttaaatatgtatttatttcaattattgtctaatat
ctgctgagcaaaagtaaatgagaaattatgtgagttaaagatcagcgact
gaaagccaactgaaagagatctatcccaggtaccccaggatgacctgagc
actaataatatttctaaataatgctaagttttccattaccctgagcatgg
gctcactaaattgcccaccttaaaatgctcttcagactgatagcacacac
tcatatctttattattctgcacggtgagtttaaacgtttgtagatactct
atgaagtcagtgtttctggactcagtcatatttgccaagtatttctgtac
tgtcatgaatcacctttgctcttct

gaattcttaatgtgatttttggcaaaataaatgtttcatgattaagaata
atgtgcaaatcatatatttgcttgcaaagtatgtttaatatttaatacta
ctaaagaacataattcttcaaagtggaaacaaaagccaggttaaaatata
agacatttaaaatatactacaaaaatgtttatattaaaatgtaacaattg
taggtattctttagaattaagaattaaagaaattaaataatttttaaaat
cctcagacacttttattcagcagccatcaatactggttctaaaacagaca
gacagacagacaaacaaacaaacaaaacaaaaactaattagagtctctct
gctattatgcactgaaagctttcttactccagaccattctccaagggtat
gtatatgtccaactagttctataaaacacaaaaaaaaaaaaccatatgat
atctgatttcattttcctgataataaatatagagagatgtgaacacaatt
caacagaattgaaataagaattcttcaacatccaaattgttgctgaggag
cccaggggtgaaatcagtactactgataatagtactggataataggcaga
ggtttaaggacaacatgcctatcagataaatgggctcttggcttagataa
aattataagagtcacgacataacacttccttgtgatgagattcagggcag
ttttcttagttaagcagaatcctggttatgttaaaaaaaaaatagaatac
agaataccagaaaatggtgtagtcatcttctcaaagaagatttattttag
gcaatttcttatcctccgtaatccctggtgaacatttagcatctggtaaa
gaatttacaggtcactagtgaaggggaagaagcttgagtagaagttcaaa
ggctggatagactcatcatagtttgttttatctatagcatctccctctat
gttgctgagttggatagcagaaagtctttgtgtgttctcatgggagagaa
catgataagaacatgtgctcccaatcatatgagacattccccaagtctac
ttatctgctactactgaagtaattgataagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14651756_14652940
seq2: B6Ng01-196I01.b_45_1219

seq1  GAATTCCACTGAGGCCCTGGGATGCCAGGAGAGACACACTGTCTCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAGGCCCTGGGATGCCAGGAGAGACACACTGTCTCTCCTC  50

seq1  TGGGCTCATGAGATTATTTTGTTCAGACACTAGTTATTACAGGGAGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCATGAGATTATTTTGTTCAGACACTAGTTATTACAGGGAGTAGC  100

seq1  TGGGCCAACTGCTTTTACCTGCAGTTACATAGTGAGCATACAAGATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAACTGCTTTTACCTGCAGTTACATAGTGAGCATACAAGATTTTA  150

seq1  TATATCTAACTGTCTCTCTATATCTATATTCAGAAAAGACCAAAAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAACTGTCTCTCTATATCTATATTCAGAAAAGACCAAAAATTCC  200

seq1  TACAAAAACTAATTTCTTGACGATAAAATTCCTCCTGGGTTAGCATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACTAATTTCTTGACGATAAAATTCCTCCTGGGTTAGCATAAAT  250

seq1  AGAATTAACTACCAAATTAGCTAAATTCTGGTTCAAAGTCATGGTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAACTACCAAATTAGCTAAATTCTGGTTCAAAGTCATGGTTCAAA  300

seq1  TGAGCATTTAATAAGCTCGCTCTCTTTTCAGAAACGACTCATTGATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTAATAAGCTCGCTCTCTTTTCAGAAACGACTCATTGATTTTT  350

seq1  TTTTCCCCAGAATGAGATTAAGTATTCATTTTAAAAACATAACTAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCAGAATGAGATTAAGTATTCATTTTAAAAACATAACTAAACCA  400

seq1  GAAACAAGCATTTTCTTTTTAAGTTACTGTGTAAACTATGTAACAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCATTTTCTTTTTAAGTTACTGTGTAAACTATGTAACAAAACT  450

seq1  ATATTGGAAATCAAAACAGCATTAAAATGTCAACTATATCTAGCCAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAAATCAAAACAGCATTAAAATGTCAACTATATCTAGCCAATCT  500

seq1  TATTAGACCAAATAATTGTGTTTTACAATGGTCTGAAAACTTGTAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACCAAATAATTGTGTTTTACAATGGTCTGAAAACTTGTAGGATT  550

seq1  TAAAGAGAAAAACTAGACAAAGAATATTTAGTCTTCATCTTTGTTAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAAAACTAGACAAAGAATATTTAGTCTTCATCTTTGTTAAGCA  600

seq1  TTTCAACTATCTGAAGAGAATCTGAATTTAATTGAAACCCCAAAATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTATCTGAAGAGAATCTGAATTTAATTGAAACCCCAAAATAATC  650

seq1  ATATATTATATTATATGTCATAAAAAGTAACATGCAGCAATTTCTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATATTATATGTCATAAAAAGTAACATGCAGCAATTTCTATGAA  700

seq1  ATCATAATTTTTTAAGAGCACAAAACTGGTCTCATTATTAGCACTCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATTTTTTAAGAGCACAAAACTGGTCTCATTATTAGCACTCATGT  750

seq1  AACAAAACTGAGGTATAGCAGAGGCTTCTGCATTGTCTCAAAAATACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTGAGGTATAGCAGAGGCTTCTGCATTGTCTCAAAAATACCAG  800

seq1  GGATAGAGCCCAGATTTAAATATGTATTTATTTCAATTATTGTCTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGCCCAGATTTAAATATGTATTTATTTCAATTATTGTCTAATAT  850

seq1  CTGCTGAGCAAAAGTAAATGAGAAATTATGTGAGTTAAAGATCAGCGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCAAAAGTAAATGAGAAATTATGTGAGTTAAAGATCAGCGACT  900

seq1  GAAAGCCAACTGAAAGAGATCTATCCCAGGTACCCCAGGATGACCTGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAACTGAAAGAGATCTATCCCAGGTACCCCAGGATGACCTGAGC  950

seq1  ACTAATAATATTTCTAAAATAATGCTAAGTTTTCCATTACCCTGAGCATG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTAATAATATTTCT-AAATAATGCTAAGTTTTCCATTACCCTGAGCATG  999

seq1  GGCTCACT-AATTGCCCACCTTAAAATGCTCTTCAGACTGATAAGCACAC  1049
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTCACTAAATTGCCCACCTTAAAATGCTCTTCAGACTGAT-AGCACAC  1048

seq1  ACTCATATCTTTATTA-TCTGCACGGTGAGTTTAAACGTTTGTAGATACT  1098
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTCATATCTTTATTATTCTGCACGGTGAGTTTAAACGTTTGTAGATACT  1098

seq1  CTATTGAAAGTCCAGTGTTTCT-GACTCAAGTCATATTTGCCCAAGTTAA  1147
      ||||   |||| |||||||||| ||||| ||||||||||| ||||||  |
seq2  CTAT--GAAGT-CAGTGTTTCTGGACTC-AGTCATATTTG-CCAAGT--A  1141

seq1  TCTCTGTTAACTTGTCATGTATTCACCTTTGCTCTTCT  1185
      | |||||  || ||||||| | ||||||||||||||||
seq2  TTTCTGT--AC-TGTCATG-AATCACCTTTGCTCTTCT  1175


seq1: chr12_14778029_14779140
seq2: B6Ng01-196I01.g_65_1148 (reverse)

seq1  AAGACTATACAATTAACTTCAGTAAGTAAAGCAGATAAAGGTAGAACTTT  50
      ||||||   ||||| |||||||| |||  |||||||||  |||| |||| 
seq2  AAGACTTATCAATT-ACTTCAGT-AGT--AGCAGATAA--GTAG-ACTT-  42

seq1  GGGGGATTGTCTCATATGGATGGGGAGCACATGTTCTTTATCATGTTCTC  100
       ||||| |||||||||| ||| |||||||||||||| |||||||||||||
seq2  -GGGGAATGTCTCATAT-GATTGGGAGCACATGTTC-TTATCATGTTCTC  89

seq1  CCTTCCCCATGGAAGAAACCAACACCAAAGGAACTTTCCTTGCTATCAAA  150
           ||||||  ||||  ||    |||||  ||||||  ||||||| ||
seq2  ----TCCCATG--AGAACACA----CAAAG--ACTTTC--TGCTATCCAA  125

seq1  CTCAGCAACCATAGAGGGAGATGCTATAGATAAAACAAACTATTGATGAG  200
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAGCAA-CATAGAGGGAGATGCTATAGATAAAACAAACTA-TGATGAG  173

seq1  TCTATCCAGCCTTTGAACTTCTACTCCAAGCTTCTCCCCCTTCACTAGTG  250
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TCTATCCAGCCTTTGAACTTCTACT-CAAGCTTCTTCCCCTTCACTAGTG  222

seq1  ACCTGTAAATTCTTTACCAGATGCTAAATGTTCACCAGGGATTACGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAATTCTTTACCAGATGCTAAATGTTCACCAGGGATTACGGAGG  272

seq1  ATAAGAAATTGCCTAAAATAAATCTTCTTTGAGAAGATGACTACACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATTGCCTAAAATAAATCTTCTTTGAGAAGATGACTACACCATT  322

seq1  TTCTGGTATTCTGTATTCTATTTTTTTTTTAACATAACCAGGATTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATTCTGTATTCTATTTTTTTTTTAACATAACCAGGATTCTGCT  372

seq1  TAACTAAGAAAACTGCCCTGAATCTCATCACAAGGAAGTGTTATGTCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGAAAACTGCCCTGAATCTCATCACAAGGAAGTGTTATGTCGTG  422

seq1  ACTCTTATAATTTTATCTAAGCCAAGAGCCCATTTATCTGATAGGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATAATTTTATCTAAGCCAAGAGCCCATTTATCTGATAGGCATGT  472

seq1  TGTCCTTAAACCTCTGCCTATTATCCAGTACTATTATCAGTAGTACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAAACCTCTGCCTATTATCCAGTACTATTATCAGTAGTACTGAT  522

seq1  TTCACCCCTGGGCTCCTCAGCAACAATTTGGATGTTGAAGAATTCTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCTGGGCTCCTCAGCAACAATTTGGATGTTGAAGAATTCTTATT  572

seq1  TCAATTCTGTTGAATTGTGTTCACATCTCTCTATATTTATTATCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTGTTGAATTGTGTTCACATCTCTCTATATTTATTATCAGGAAA  622

seq1  ATGAAATCAGATATCATATGGTTTTTTTTTTTTGTGTTTTATAGAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAGATATCATATGGTTTTTTTTTTTTGTGTTTTATAGAACTAG  672

seq1  TTGGACATATACATACCCTTGGAGAATGGTCTGGAGTAAGAAAGCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATATACATACCCTTGGAGAATGGTCTGGAGTAAGAAAGCTTTCA  722

seq1  GTGCATAATAGCAGAGAGACTCTAATTAGTTTTTGTTTTGTTTGTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAATAGCAGAGAGACTCTAATTAGTTTTTGTTTTGTTTGTTTGTT  772

seq1  TGTCTGTCTGTCTGTCTGTTTTAGAACCAGTATTGATGGCTGCTGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTGTCTGTTTTAGAACCAGTATTGATGGCTGCTGAATAA  822

seq1  AAGTGTCTGAGGATTTTAAAAATTATTTAATTTCTTTAATTCTTAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGAGGATTTTAAAAATTATTTAATTTCTTTAATTCTTAATTCT  872

seq1  AAAGAATACCTACAATTGTTACATTTTAATATAAACATTTTTGTAGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACCTACAATTGTTACATTTTAATATAAACATTTTTGTAGTATA  922

seq1  TTTTAAATGTCTTATATTTTAACCTGGCTTTTGTTTCCACTTTGAAGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTCTTATATTTTAACCTGGCTTTTGTTTCCACTTTGAAGAAT  972

seq1  TATGTTCTTTAGTAGTATTAAATATTAAACATACTTTGCAAGCAAATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTTTAGTAGTATTAAATATTAAACATACTTTGCAAGCAAATATA  1022

seq1  TGATTTGCACATTATTCTTAATCATGAAACATTTATTTTGCCAAAAATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCACATTATTCTTAATCATGAAACATTTATTTTGCCAAAAATCA  1072

seq1  CATTAAGAATTC  1112
      ||||||||||||
seq2  CATTAAGAATTC  1084


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