BAC Information

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BAC

Clone NameB6Ng01-197A18
Chromosome12 (Build37)
Map Location 30,411,365 - 30,554,204
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneTtc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18, LOC100043055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197A18.bB6Ng01-197A18.g
ACCGA019021GA019022
length7291,154
definitionB6Ng01-197A18.b B6Ng01-197A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,411,365 - 30,412,093)(30,553,043 - 30,554,204)
sequence
gaattcatcaaaagtacaacttttcctcaacgaagagccctgataagatg
cagaaaggagacgcaaaggactggtacaacatttgaaaatcttggtactg
aaccacgactaagtgtaacacacagccagcttttgaaaagcaatagttaa
aaaaaacttggtaagaaaatggacaaaggcagggacccatatgtcactta
acatgacagaccgtgcaatggtcagtcccagaatctataaggaaagggtg
ggcttaacccaagcgggcaccacaccacacttggcagaaccagagagaca
cagtgacggtgtgtgacttgtcacagcatcgctgggaaaaccttttaata
gttcctttagaatatcagactgatagtacctatggagcccactatggacc
tggaatatccccaaaaaccagaagcatattcacccacaaacttacatgca
aatgtctgcagcagctctgttttggagaaccccagatgagaattacccag
aagtccttcagagaatgaaggacttgggacaatatgtcaagcaatgctat
tcaaccacggagtagaacaaactgtcaatgaacaaagcaacctggggagt
ctccagaggaaaatgctaattaagaaaagctacttttaaggtcctgtagt
gtaagactccatttaaatcattcttggcataacaaaatacaggatgggta
tcattccagtggctggggtggggtggggg

gaattcttttatctttgaaatattttgatcttggttgttgaagtttcaaa
tgtagaaagttttatttcaatccttgttgaagatgggttaaaattcagtt
tgttaatcatcttggtgtactaattaccattttcccctgataccacctgt
cttctccctccaaatggtctcagggcttttccaacctgttactctgtcac
tctgagctggttctggcctccccgtgtggcagccagaactcagtgagcta
atgtgcacagttctgtgggcatcagatggcgtccaagcactgtgcagaca
tcacggggttgatccttatgacgatcttagatgacccatctgatgtagtg
cagtcggccagcactgcgtcggccagcaccgctatcactttgcagatgga
aaggagaaagtgggaagctcaagggcttcagggctgtgatggccaagcca
aggtctgacctcgggagtctgcattttggtctgtgccaaccttggatctg
cttactgtcccactgtggccttcagctgagcaacttaagtcacacagatg
ctgtgtgtgtgtgtaaatgtgcaatttctttcacatcacacatattcaga
tatacctctaggccttcgagtaaatcttaataaagcaatttaaatatctg
gactaaaattttaaaggaaatactcagagggaaaaaaacagtagtagaaa
ctttctctactcagtctcagcagctactctctttaatgcccatgtggcac
tgcagctgtttctgtggcaacagctctagtaatgaatagaaggaagaaaa
agagacattccctagggagatggcacagtcccccaaggccacccaaagac
aggaatcagccacagtggcgtcatcctggcagtgagattcgacagaacca
caactcagctgtgaacaaggcatcatcatttgtgaaagaattcccttgag
gaaggccagagtacataaatcaattagaagttgcaatctgaccatcacta
agttccactctgtgtcgttatcgttatgtgtcactctgtgcggttctgga
tgcagagcacatgggcgcaagcctccagtccttcagtcaggagttcatat
tctactgagatatcacagaacttggctctacaattgtaactaaactaaat
aatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_30411365_30412093
seq2: B6Ng01-197A18.b_47_775

seq1  GAATTCATCAAAAGTACAACTTTTCCTCAACGAAGAGCCCTGATAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAAGTACAACTTTTCCTCAACGAAGAGCCCTGATAAGATG  50

seq1  CAGAAAGGAGACGCAAAGGACTGGTACAACATTTGAAAATCTTGGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGAGACGCAAAGGACTGGTACAACATTTGAAAATCTTGGTACTG  100

seq1  AACCACGACTAAGTGTAACACACAGCCAGCTTTTGAAAAGCAATAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGACTAAGTGTAACACACAGCCAGCTTTTGAAAAGCAATAGTTAA  150

seq1  AAAAAACTTGGTAAGAAAATGGACAAAGGCAGGGACCCATATGTCACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTGGTAAGAAAATGGACAAAGGCAGGGACCCATATGTCACTTA  200

seq1  ACATGACAGACCGTGCAATGGTCAGTCCCAGAATCTATAAGGAAAGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGACCGTGCAATGGTCAGTCCCAGAATCTATAAGGAAAGGGTG  250

seq1  GGCTTAACCCAAGCGGGCACCACACCACACTTGGCAGAACCAGAGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACCCAAGCGGGCACCACACCACACTTGGCAGAACCAGAGAGACA  300

seq1  CAGTGACGGTGTGTGACTTGTCACAGCATCGCTGGGAAAACCTTTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACGGTGTGTGACTTGTCACAGCATCGCTGGGAAAACCTTTTAATA  350

seq1  GTTCCTTTAGAATATCAGACTGATAGTACCTATGGAGCCCACTATGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTAGAATATCAGACTGATAGTACCTATGGAGCCCACTATGGACC  400

seq1  TGGAATATCCCCAAAAACCAGAAGCATATTCACCCACAAACTTACATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATCCCCAAAAACCAGAAGCATATTCACCCACAAACTTACATGCA  450

seq1  AATGTCTGCAGCAGCTCTGTTTTGGAGAACCCCAGATGAGAATTACCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCAGCAGCTCTGTTTTGGAGAACCCCAGATGAGAATTACCCAG  500

seq1  AAGTCCTTCAGAGAATGAAGGACTTGGGACAATATGTCAAGCAATGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTCAGAGAATGAAGGACTTGGGACAATATGTCAAGCAATGCTAT  550

seq1  TCAACCACGGAGTAGAACAAACTGTCAATGAACAAAGCAACCTGGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACGGAGTAGAACAAACTGTCAATGAACAAAGCAACCTGGGGAGT  600

seq1  CTCCAGAGGAAAATGCTAATTAAGAAAAGCTACTTTTAAGGTCCTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGGAAAATGCTAATTAAGAAAAGCTACTTTTAAGGTCCTGTAGT  650

seq1  GTAAGACTCCATTTAAATCATTCTTGGCATAACAAAATACAGGATGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTCCATTTAAATCATTCTTGGCATAACAAAATACAGGATGGGTA  700

seq1  TCATTCCAGTGGCTGGGGTGGGGTGGGGG  729
      |||||||||||||||||||||||||||||
seq2  TCATTCCAGTGGCTGGGGTGGGGTGGGGG  729


seq1: chr12_30553043_30554204
seq2: B6Ng01-197A18.g_66_1219 (reverse)

seq1  CATTATTTTTAGTTTAGGTTCACATGTGTGAGCCAATGTCTCTGATAACT  50
      |||||  |||||||||| | ||  |||  |||||||  ||| ||||| ||
seq2  CATTA--TTTAGTTTAGTTACAATTGT-AGAGCCAAGTTCTGTGATATCT  47

seq1  CAGTAGAATATAGGACTCCTGACTTGAGGACTTGAGCCTGCTGCCCA-GT  99
      ||||||||||| | ||||||||||  |||||| ||| ||   ||||| ||
seq2  CAGTAGAATAT-GAACTCCTGACTGAAGGACTGGAGGCTTGCGCCCATGT  96

seq1  GCTCTGCACCCAGAACCCGCACAGAGTGGACACATAACGATAACGGACAC  149
      |||||||| |||||| ||||||||||| |||||||||||||||| |||||
seq2  GCTCTGCATCCAGAA-CCGCACAGAGT-GACACATAACGATAAC-GACAC  143

seq1  AGAGTGGAACTTAGTGGATGGTCAGATTGCCACTTCTAATTGATTTATGT  199
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AGAGTGGAACTTAGT-GATGGTCAGATTGCAACTTCTAATTGATTTATGT  192

seq1  ACTCTGGCCTTCCTCAAGGGAATTCTTTTCACAAATGATGATGCCTTGTT  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTCTGGCCTTCCTCAAGGGAATTC-TTTCACAAATGATGATGCCTTGTT  241

seq1  CACAGCTGAGTTGTGGTTCTGTCGAATCTCACTGCCAGGATGACGCCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGAGTTGTGGTTCTGTCGAATCTCACTGCCAGGATGACGCCACT  291

seq1  GTGGCTGATTCCTGTCTTTGGGTGGCCTTGGGGGACTGTGCCATCTCCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGATTCCTGTCTTTGGGTGGCCTTGGGGGACTGTGCCATCTCCCT  341

seq1  AGGGAATGTCTCTTTTTCTTCCTTCTATTCATTACTAGAGCTGTTGCCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTCTCTTTTTCTTCCTTCTATTCATTACTAGAGCTGTTGCCAC  391

seq1  AGAAACAGCTGCAGTGCCACATGGGCATTAAAGAGAGTAGCTGCTGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTGCAGTGCCACATGGGCATTAAAGAGAGTAGCTGCTGAGAC  441

seq1  TGAGTAGAGAAAGTTTCTACTACTGTTTTTTTCCCTCTGAGTATTTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAGAAAGTTTCTACTACTGTTTTTTTCCCTCTGAGTATTTCCTT  491

seq1  TAAAATTTTAGTCCAGATATTTAAATTGCTTTATTAAGATTTACTCGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTAGTCCAGATATTTAAATTGCTTTATTAAGATTTACTCGAAG  541

seq1  GCCTAGAGGTATATCTGAATATGTGTGATGTGAAAGAAATTGCACATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGGTATATCTGAATATGTGTGATGTGAAAGAAATTGCACATTTA  591

seq1  CACACACACACAGCATCTGTGTGACTTAAGTTGCTCAGCTGAAGGCCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGCATCTGTGTGACTTAAGTTGCTCAGCTGAAGGCCACA  641

seq1  GTGGGACAGTAAGCAGATCCAAGGTTGGCACAGACCAAAATGCAGACTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGTAAGCAGATCCAAGGTTGGCACAGACCAAAATGCAGACTCC  691

seq1  CGAGGTCAGACCTTGGCTTGGCCATCACAGCCCTGAAGCCCTTGAGCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTCAGACCTTGGCTTGGCCATCACAGCCCTGAAGCCCTTGAGCTTC  741

seq1  CCACTTTCTCCTTTCCATCTGCAAAGTGATAGCGGTGCTGGCCGACGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTCCTTTCCATCTGCAAAGTGATAGCGGTGCTGGCCGACGCAG  791

seq1  TGCTGGCCGACTGCACTACATCAGATGGGTCATCTAAGATCGTCATAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCGACTGCACTACATCAGATGGGTCATCTAAGATCGTCATAAGG  841

seq1  ATCAACCCCGTGATGTCTGCACAGTGCTTGGACGCCATCTGATGCCCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCCCGTGATGTCTGCACAGTGCTTGGACGCCATCTGATGCCCACA  891

seq1  GAACTGTGCACATTAGCTCACTGAGTTCTGGCTGCCACACGGGGAGGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGCACATTAGCTCACTGAGTTCTGGCTGCCACACGGGGAGGCCA  941

seq1  GAACCAGCTCAGAGTGACAGAGTAACAGGTTGGAAAAGCCCTGAGACCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCTCAGAGTGACAGAGTAACAGGTTGGAAAAGCCCTGAGACCAT  991

seq1  TTGGAGGGAGAAGACAGGTGGTATCAGGGGAAAATGGTAATTAGTACACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGAGAAGACAGGTGGTATCAGGGGAAAATGGTAATTAGTACACC  1041

seq1  AAGATGATTAACAAACTGAATTTTAACCCATCTTCAACAAGGATTGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATTAACAAACTGAATTTTAACCCATCTTCAACAAGGATTGAAAT  1091

seq1  AAAACTTTCTACATTTGAAACTTCAACAACCAAGATCAAAATATTTCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTCTACATTTGAAACTTCAACAACCAAGATCAAAATATTTCAAA  1141

seq1  GATAAAAGAATTC  1162
      |||||||||||||
seq2  GATAAAAGAATTC  1154


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