BAC Information

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BAC

Clone NameB6Ng01-197C20
Chromosome12 (Build37)
Map Location 16,504,299 - 16,646,221
singlet/doubletdoublet
Overlap geneLpin1
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneNtsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197C20.bB6Ng01-197C20.g
ACCGA019111GA019112
length3931,104
definitionB6Ng01-197C20.b B6Ng01-197C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,504,299 - 16,504,697)(16,645,143 - 16,646,221)
sequence
agagcagggacatggaggcaggagctgatacagaggctgtggacaagtgc
ttgattacaggcttgcttctcttggcttgctcagtctgctttctcataga
acccaggacctccatcccagggataacactacacactgcgggctgggccc
tcccacatcaatcattaatcaggaaactatactataggtcattcttatgg
agcattttctcaggaaagaagacagacggaaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
gtaggttaatacaaaagtgttaggcataccctaatcttggtcccctgccc
ctagtaagcaagacagctagagaggaactgggtagtaggtaac
gaattctcttcatctaccgaatgaagtggtttaaactggttcaaaatgaa
aagggtgggggaggggagacttggctcgtctgttcttttaccggatttga
cctcagcagaaaccaagtttattaatagccatctgatagacactttgcag
tggctggtgaagcgagccgagctcgagtgtctagcttttacacagttaga
aatggccatggcgtcagtacatggagagagagaacgtgcgtcaacatgaa
tgtaagccatcaatttgggaaacagcattttgcagacatgagttattctt
gggtttttggtgatccagagcgctttaaagtgatgtatctggtttattat
tgtgtactgtgtaaacgttcacgttgggtactatatctgccattttccat
attttgctctatccctgcctaagaatccaacagtggggccaggcaagagg
gcttcatgcataaaggcacttgctgccaaacttgattatctgcatttatt
tctctaggctcacgtggtggaaggggagacctgactcctgaaagtgtcct
ctgacctcagcccctaatgtgcaccatgtaatagtaaataaaaatgtaaa
acacacacacagacacacacagacagacagacacacacacacagacacac
agagagacacacacatacagacacacacacacagacacacacacagacac
acacacacacagacacacacacatacacacagacacatgcacacacacac
tcacacagacacacatagacagacagacacacacacacagacacacacac
agacacacacacaaacacacacacagacacacacacatacacacagacac
attgcacacacacacttcacacagacacacagacacatacacattacaca
cacacacacacaccacacccggacacagagagagaagagaagagacccct
acaatgaacaatttagtcacacacagatgaacctggagaggagtttttat
ttagtattttcattttggtgtgtgtggtgcgccatgcacgcaccccttct
ggtctgtctgttctctcctctcagcttgtttcaatctgggcagccatgct
gttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16504299_16504697
seq2: B6Ng01-197C20.b_43_441

seq1  GAATTCAGAGCAGGGACATGGAGGCAGGAGCTGATACAGAGGCTGTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAGGGACATGGAGGCAGGAGCTGATACAGAGGCTGTGGAC  50

seq1  AAGTGCTTGATTACAGGCTTGCTTCTCTTGGCTTGCTCAGTCTGCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTGATTACAGGCTTGCTTCTCTTGGCTTGCTCAGTCTGCTTTCT  100

seq1  CATAGAACCCAGGACCTCCATCCCAGGGATAACACTACACACTGCGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAACCCAGGACCTCCATCCCAGGGATAACACTACACACTGCGGGCT  150

seq1  GGGCCCTCCCACATCAATCATTAATCAGGAAACTATACTATAGGTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTCCCACATCAATCATTAATCAGGAAACTATACTATAGGTCATTC  200

seq1  TTATGGAGCATTTTCTCAGGAAAGAAGACAGACGGAAGGAAGGAAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGCATTTTCTCAGGAAAGAAGACAGACGGAAGGAAGGAAGGAAG  250

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  300

seq1  AGGAAGGTAGGTTAATACAAAAGTGTTAGGCATACCCTAATCTTGGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTAGGTTAATACAAAAGTGTTAGGCATACCCTAATCTTGGTCCC  350

seq1  CTGCCCCTAGTAAGCAAGACAGCTAGAGAGGAACTGGGTAGTAGGTAAC  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTAGTAAGCAAGACAGCTAGAGAGGAACTGGGTAGTAGGTAAC  399

seq1: chr12_16645143_16646221
seq2: B6Ng01-197C20.g_68_1171 (reverse)

seq1  AAACAGCATGGCTG-CCAGA-TGAGAC-AGCTGAGA-GAGAG-ACAGACA  45
      |||||||||||||| ||||| ||| || |||||||| ||||| |||||||
seq2  AAACAGCATGGCTGCCCAGATTGAAACAAGCTGAGAGGAGAGAACAGACA  50

seq1  GA-CAG-AGGGGTGCGTGCAT-GCGCA-CACACACAC--AAATG-AAATA  88
      || ||| |||||||||||||| ||||| |||||||||  ||||| |||||
seq2  GACCAGAAGGGGTGCGTGCATGGCGCACCACACACACCAAAATGAAAATA  100

seq1  CTAA--TAAAACT-CTCT-CAGG-TCATCTGTGTGTGACT-AATTG-TCA  131
      ||||   |||||| |||| |||| |||||||||||||||| ||||| |||
seq2  CTAAATAAAAACTCCTCTCCAGGTTCATCTGTGTGTGACTAAATTGTTCA  150

seq1  TTGTA-GGGTCTC-TCTC-TCTCTCTCTGTGTCTGTGTGTGTGTGTGTGT  178
      ||||| ||||||| |||| |||||||||||||| | ||||| ||||||||
seq2  TTGTAGGGGTCTCTTCTCTTCTCTCTCTGTGTCCGGGTGTG-GTGTGTGT  199

seq1  GTGTGTGTGT-ATGTGTATGTGTCTGTGTGTCTGTGTG-AGTGTGTGTGT  226
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  GTGTGTGTGTAATGTGTATGTGTCTGTGTGTCTGTGTGAAGTGTGTGTGT  249

seq1  GC-ATGTGTCTGTGTGTATGTGTGTGTGTCTGTGTGTGTGTTTGTGTGTG  275
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGTCTGTGTGTATGTGTGTGTGTCTGTGTGTGTGTTTGTGTGTG  299

seq1  TGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTCTGTCTATGTGTGTCTG  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTCTGTCTATGTGTGTCTG  349

seq1  TGTGAGTGTGTGTGTGCATGTGTCTGTGTGTATGTGTGTGTGTCTGTGTG  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTGTGTGCATGTGTCTGTGTGTATGTGTGTGTGTCTGTGTG  399

seq1  TGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTATGTGTGTGTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTATGTGTGTGTC  449

seq1  TCTCTGTGTGTCTGTGTGTGTGTGTCTGTCTGTCTGTGTGTGTCTGTGTG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTCTGTGTGTGTGTGTCTGTCTGTCTGTGTGTGTCTGTGTG  499

seq1  TGTGTTTTACATTTTTATTTACTATTACATGGTGCACATTAGGGGCTGAG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTACATTTTTATTTACTATTACATGGTGCACATTAGGGGCTGAG  549

seq1  GTCAGAGGACACTTTCAGGAGTCAGGTCTCCCCTTCCACCACGTGAGCCT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGACACTTTCAGGAGTCAGGTCTCCCCTTCCACCACGTGAGCCT  599

seq1  AGAGAAATAAATGCAGATAATCAAGTTTGGCAGCAAGTGCCTTTATGCAT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAATGCAGATAATCAAGTTTGGCAGCAAGTGCCTTTATGCAT  649

seq1  GAAGCCCTCTTGCCTGGCCCCACTGTTGGATTCTTAGGCAGGGATAGAGC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCTTGCCTGGCCCCACTGTTGGATTCTTAGGCAGGGATAGAGC  699

seq1  AAAATATGGAAAATGGCAGATATAGTACCCAACGTGAACGTTTACACAGT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGGAAAATGGCAGATATAGTACCCAACGTGAACGTTTACACAGT  749

seq1  ACACAATAATAAACCAGATACATCACTTTAAAGCGCTCTGGATCACCAAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATAATAAACCAGATACATCACTTTAAAGCGCTCTGGATCACCAAA  799

seq1  AACCCAAGAATAACTCATGTCTGCAAAATGCTGTTTCCCAAATTGATGGC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGAATAACTCATGTCTGCAAAATGCTGTTTCCCAAATTGATGGC  849

seq1  TTACATTCATGTTGACGCACGTTCTCTCTCTCCATGTACTGACGCCATGG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCATGTTGACGCACGTTCTCTCTCTCCATGTACTGACGCCATGG  899

seq1  CCATTTCTAACTGTGTAAAAGCTAGACACTCGAGCTCGGCTCGCTTCACC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAACTGTGTAAAAGCTAGACACTCGAGCTCGGCTCGCTTCACC  949

seq1  AGCCACTGCAAAGTGTCTATCAGATGGCTATTAATAAACTTGGTTTCTGC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGCAAAGTGTCTATCAGATGGCTATTAATAAACTTGGTTTCTGC  999

seq1  TGAGGTCAAATCCGGTAAAAGAACAGACGAGCCAAGTCTCCCCTCCCCCA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAAATCCGGTAAAAGAACAGACGAGCCAAGTCTCCCCTCCCCCA  1049

seq1  CCCTTTTCATTTTGAACCAGTTTAAACCACTTCATTC-TTAGATGAAGAG  1074
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CCCTTTTCATTTTGAACCAGTTTAAACCACTTCATTCGGTAGATGAAGAG  1099

seq1  AATTC  1079
      |||||
seq2  AATTC  1104