BAC Information

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BAC

Clone NameB6Ng01-198A16
Chromosome12 (Build37)
Map Location 54,548,925 - 54,604,431
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneArhgap5, Akap6
Downstream geneEgln3, EG665239, EG665251, LOC665256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198A16.bB6Ng01-198A16.g
ACCGA019743GA019744
length1,1271,066
definitionB6Ng01-198A16.b B6Ng01-198A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,548,925 - 54,550,056)(54,603,377 - 54,604,431)
sequence
gaattcttcagggaatggtttaagatgtggaggaaaaaaatgtattgaag
aattctctaaaaggataagagtcgaatttagcagagtagaagttaggttt
ggggcagaagaaaatcaatccagataaatgggtcagcattcatcacttgt
tcaacaaataggtattgtgctaggtgccaagcgttgggcctggcccctga
gagtgctgggtgattgatttgtgttaggttgactccctgcagggattatt
cacaaacaaccttcccatgtaaataggaactttaattacagaagagaagg
gttaaagtctttctggttggactgtggtgtggagttttgtttccctgcaa
aacggagcaggctctgaagcagtgtaacaaaccagcaggaagctgcattc
cacgggatttctatggggaccacagagactctgttccaatgcttagggca
gtggtttgaagtttaaagtagcttcaggctaaagtgggagctggatagcc
ccactcaactaaactgtaaaactgaaaccatgcacaatgtaaataaaact
gggtccatagcttcctgctcatctggaggccttatcaaggccttgcttac
agtttctttttgttaaaagagagaaaatagtgggaaattgggagtattgt
gccacactgaaaatctaaatatctgtttctttatttgcactataactttt
tttgtctgttcagttagaggcaaattggggaaagcagacccttcaacctc
cctccacccccccccccaaagaatcaactcacaggaaaaacaatactttc
tgtatcagacttaggctcagcctgtcgaggagaaaggaagtcatgttctg
agatgagtttgtttagtacttagcttctgtctgccctctgtgaagtactt
agtatctcttgtatgcctgatcaacaatggatgctatctgttagtgggag
aatctccctgtcttctgggttcccctgacacattccgatgggtaaagttt
actaggtgccaccttactaggtctctggtccttcagtgctgcagctgctg
agtgttcatgacataggatggcttccctgttcgtaacctgtgagtcttgt
tggattacagctctcagttatcaccat

gaattccaaagccaaatatatttactctaagtttccttataggaaatttt
gtcagccctgctcaacaggaaaataacataaagaaatccaaattctaatt
ttcctctctcgaaccaagtacaattcttttatattatctaatatttttca
tatattttaatcaattttcctcttccctgaactccctacccatctaactt
caaaacaaaagaaaagaaaaaagaaaaaaaagataaacaaacaacaaggg
gggggcacacaaaagcatggagtccattttgtgttggccagttgtttctc
cacattgggctgatatactcagtagtactccttcagaaaaaaaaacaaaa
aacaaaaaacaaaacaaaaaaacctcattttccctttcctagctggtatc
caatgcaaacaccttcttggttagaagtgggactttgtgtcaacccccct
ttctcctaagaacacacggcttaagtacagatgacatctgtctttcttat
ccaaaatattggcagctagaaatatcagatttcagctgctggaatgctta
catatacataaaatatctgaaagaaaagagtcaggcctatatgcaaaatt
cacttatttttcacacatccctatgtatatctccctatgtatgccacctt
aatataagtttatatattattcttaatatataagaataggcatgcaacaa
agctttcttattatggcatcatgttggaatactctgagcactagagagtt
tctaaggtcatggcttgtaattagggatttgcaaactaagtgattcacat
atgtgtgatcacagctcttagcatgcaatgacaaacaatcacggtcaaaa
tagatgcttcattttgatcagaattcaaataaaaggttatagcacctcac
cagccaaagctacaaggacttttttcagttggtagctggcaatatgacat
ccacccttaagaattattttcagatggacatggtggcataaaacccttta
accccagcacttgggtaggcagaagataagcagatcctccatgagtctga
aaacctggtctgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54548925_54550056
seq2: B6Ng01-198A16.b_43_1169

seq1  GAATTCTTCAGGGAATGGTTTAAGATGTGGAGGAAAAAAATGTATTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGGAATGGTTTAAGATGTGGAGGAAAAAAATGTATTGAAG  50

seq1  AATTCTCTAAAAGGATAAGAGTCGAATTTAGCAGAGTAGAAGTTAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTAAAAGGATAAGAGTCGAATTTAGCAGAGTAGAAGTTAGGTTT  100

seq1  GGGGCAGAAGAAAATCAATCCAGATAAATGGGTCAGCATTCATCACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGAAAATCAATCCAGATAAATGGGTCAGCATTCATCACTTGT  150

seq1  TCAACAAATAGGTATTGTGCTAGGTGCCAAGCGTTGGGCCTGGCCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAATAGGTATTGTGCTAGGTGCCAAGCGTTGGGCCTGGCCCCTGA  200

seq1  GAGTGCTGGGTGATTGATTTGTGTTAGGTTGACTCCCTGCAGGGATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGTGATTGATTTGTGTTAGGTTGACTCCCTGCAGGGATTATT  250

seq1  CACAAACAACCTTCCCATGTAAATAGGAACTTTAATTACAGAAGAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAACCTTCCCATGTAAATAGGAACTTTAATTACAGAAGAGAAGG  300

seq1  GTTAAAGTCTTTCTGGTTGGACTGTGGTGTGGAGTTTTGTTTCCCTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTCTTTCTGGTTGGACTGTGGTGTGGAGTTTTGTTTCCCTGCAA  350

seq1  AACGGAGCAGGCTCTGAAGCAGTGTAACAAACCAGCAGGAAGCTGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGCAGGCTCTGAAGCAGTGTAACAAACCAGCAGGAAGCTGCATTC  400

seq1  CACGGGATTTCTATGGGGACCACAGAGACTCTGTTCCAATGCTTAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGATTTCTATGGGGACCACAGAGACTCTGTTCCAATGCTTAGGGCA  450

seq1  GTGGTTTGAAGTTTAAAGTAGCTTCAGGCTAAAGTGGGAGCTGGATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAAGTTTAAAGTAGCTTCAGGCTAAAGTGGGAGCTGGATAGCC  500

seq1  CCACTCAACTAAACTGTAAAACTGAAACCATGCACAATGTAAATAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAACTAAACTGTAAAACTGAAACCATGCACAATGTAAATAAAACT  550

seq1  GGGTCCATAGCTTCCTGCTCATCTGGAGGCCTTATCAAGGCCTTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATAGCTTCCTGCTCATCTGGAGGCCTTATCAAGGCCTTGCTTAC  600

seq1  AGTTTCTTTTTGTTAAAAGAGAGAAAATAGTGGGAAATTGGGAGTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTTTGTTAAAAGAGAGAAAATAGTGGGAAATTGGGAGTATTGT  650

seq1  GCCACACTGAAAATCTAAATATCTGTTTCTTTATTTGCACTATAACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGAAAATCTAAATATCTGTTTCTTTATTTGCACTATAACTTTT  700

seq1  TTTGTCTGTTCAGTTAGAGGCAAATTGGGGAAAGCAGACCCTTCAACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTTCAGTTAGAGGCAAATTGGGGAAAGCAGACCCTTCAACCTC  750

seq1  CCTCCACCCCCCCCCCCAAAGAATCAACTCACAGGAAAAACAATACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCCCCCCCCCCAAAGAATCAACTCACAGGAAAAACAATACTTTC  800

seq1  TGTATCAGACTTAGGCTCAGCCTGTCGAGGAGAAAGGAAGTCATGTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGACTTAGGCTCAGCCTGTCGAGGAGAAAGGAAGTCATGTTCTG  850

seq1  AGATGAGTTTGTTTAGTACTTAGCTTCTGTCTGCCCTCTGTGAAGTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTTTGTTTAGTACTTAGCTTCTGTCTGCCCTCTGTGAAGTACTT  900

seq1  AGTATCTCTTGTATGCCTGATCAACAATGGATGCTATCTGTTAGTGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCTTGTATGCCTGATCAACAATGGATGCTATCTGTTAGTGGGAG  950

seq1  AATCTCCCTGTCTTCT-GGTTCCCCTGACACATT-CGAT-GGTTAAGTTT  997
      |||||||||||||||| ||||||||||||||||| |||| ||| ||||||
seq2  AATCTCCCTGTCTTCTGGGTTCCCCTGACACATTCCGATGGGTAAAGTTT  1000

seq1  ACTAGGTGCCACCTTACTAGGTCTCTGGTCCTTCAGTTGCTGCAGCTGCT  1047
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTAGGTGCCACCTTACTAGGTCTCTGGTCCTTCAG-TGCTGCAGCTGCT  1049

seq1  GAGGTGGTCATTGACATAAGGGTTGGCTTCCCTGGTCGGTAACCTGTGAG  1097
      || ||| ||| |||||||  || ||||||||||| || ||||||||||||
seq2  GA-GTGTTCA-TGACATA--GGATGGCTTCCCTGTTC-GTAACCTGTGAG  1094

seq1  TCTTGTTGGATAACAGGCTTCTCAGTTATCACCAT  1132
      ||||||||||| ||||   ||||||||||||||||
seq2  TCTTGTTGGATTACAG--CTCTCAGTTATCACCAT  1127


seq1: chr12_54603377_54604431
seq2: B6Ng01-198A16.g_64_1129 (reverse)

seq1  TGTGCAGACCAGGTTTTCAGACTCATGGA-GATCTGCTTATC-TCTGCCT  48
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TGTGCAGACCAGGTTTTCAGACTCATGGAGGATCTGCTTATCTTCTGCCT  50

seq1  A-CCAAGTGCTGGGGTTAAAGG--TTTATGCCACCATGTCCATCTG-AAA  94
      | ||||||||||||||||||||  |||||||||||||||||||||| |||
seq2  ACCCAAGTGCTGGGGTTAAAGGGTTTTATGCCACCATGTCCATCTGAAAA  100

seq1  TAATTCTTA--GGT-GATGTCATATTGCCAGCTACC-ACTG-AAAAAGTC  139
      |||||||||  ||| ||||||||||||||||||||| |||| ||||||||
seq2  TAATTCTTAAGGGTGGATGTCATATTGCCAGCTACCAACTGAAAAAAGTC  150

seq1  CTTGTAGCTTTGGCTGGTGAGGTGCTATAACCTTTTATTTGAATTCTGAT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCTTTGGCTGGTGAGGTGCTATAACCTTTTATTTGAATTCTGAT  200

seq1  CAAAATGAAGCATCTATTTTGACCGTGATTGTTTGTCATTGCATGCTAAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAGCATCTATTTTGACCGTGATTGTTTGTCATTGCATGCTAAG  250

seq1  AGCTGTGATCACACATATGTGAATCACTTAGTTTGCAAATCCCTAATTAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGATCACACATATGTGAATCACTTAGTTTGCAAATCCCTAATTAC  300

seq1  AAGCCATGACCTTAGAAACTCTCTAGTGCTCAGAGTATTCCAACATGATG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGACCTTAGAAACTCTCTAGTGCTCAGAGTATTCCAACATGATG  350

seq1  CCATAATAAGAAAGCTTTGTTGCATGCCTATTCTTATATATTAAGAATAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAAGAAAGCTTTGTTGCATGCCTATTCTTATATATTAAGAATAA  400

seq1  TATATAAACTTATATTAAGGTGGCATACATAGGGAGATATACATAGGGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACTTATATTAAGGTGGCATACATAGGGAGATATACATAGGGAT  450

seq1  GTGTGAAAAATAAGTGAATTTTGCATATAGGCCTGACTCTTTTCTTTCAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAATAAGTGAATTTTGCATATAGGCCTGACTCTTTTCTTTCAG  500

seq1  ATATTTTATGTATATGTAAGCATTCCAGCAGCTGAAATCTGATATTTCTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATGTATATGTAAGCATTCCAGCAGCTGAAATCTGATATTTCTA  550

seq1  GCTGCCAATATTTTGGATAAGAAAGACAGATGTCATCTGTACTTAAGCCG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAATATTTTGGATAAGAAAGACAGATGTCATCTGTACTTAAGCCG  600

seq1  TGTGTTCTTAGGAGAAAGGGGGGTTGACACAAAGTCCCACTTCTAACCAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAGGAGAAAGGGGGGTTGACACAAAGTCCCACTTCTAACCAA  650

seq1  GAAGGTGTTTGCATTGGATACCAGCTAGGAAAGGGAAAATGAGGTTTTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTTTGCATTGGATACCAGCTAGGAAAGGGAAAATGAGGTTTTTT  700

seq1  TGTTTTGTTTTTTGTTTTTTGTTTTTTTTTCTGAAGGAGTACTACTGAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTTGTTTTTTGTTTTTTTTTCTGAAGGAGTACTACTGAGT  750

seq1  ATATCAGCCCAATGTGGAGAAACAACTGGCCAACACAAAATGGACTCCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCCCAATGTGGAGAAACAACTGGCCAACACAAAATGGACTCCAT  800

seq1  GCTTTTGTGTGCCCCCCCCTTGTTGTTTGTTTATCTTTTTTTTCTTTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGTGCCCCCCCCTTGTTGTTTGTTTATCTTTTTTTTCTTTTTT  850

seq1  CTTTTCTTTTGTTTTGAAGTTAGATGGGTAGGGAGTTCAGGGAAGAGGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTGTTTTGAAGTTAGATGGGTAGGGAGTTCAGGGAAGAGGAA  900

seq1  AATTGATTAAAATATATGAAAAATATTAGATAATATAAAAGAATTGTACT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTAAAATATATGAAAAATATTAGATAATATAAAAGAATTGTACT  950

seq1  TGGTTCGAGAGAGGAAAATTAGAATTTGGATTTCTTTATGTTATTTTCCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGAGAGAGGAAAATTAGAATTTGGATTTCTTTATGTTATTTTCCT  1000

seq1  GTTGAGCAGGGCTGACAAAATTTCCTATAAGGAAACTTAGAGTAAATATA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAGGGCTGACAAAATTTCCTATAAGGAAACTTAGAGTAAATATA  1050

seq1  TTTGGCTTTGGAATTC  1055
      ||||||||||||||||
seq2  TTTGGCTTTGGAATTC  1066


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