BAC Information

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BAC

Clone NameB6Ng01-198C06
Chromosome12 (Build37)
Map Location 90,908,383 - 90,960,806
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039261, EG666915
Downstream geneLOC100039498, LOC100039287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198C06.bB6Ng01-198C06.g
ACCGA019816GA019817
length1,0991,080
definitionB6Ng01-198C06.b B6Ng01-198C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,959,694 - 90,960,806)(90,908,383 - 90,909,464)
sequence
gaattcaccatggatcttttggcatttatactttttttttcctatgaaga
agaacttttgatagttcagttcttttatcatcagacggggaacagttgca
tgcaaaacttcagcttactattctttatcctcctaaacttcactgcttac
tgttctaactgtgacttcttgtccatcattcaaaataaaaaaaaaaaatc
tacatcattgtactgtgcacaggaaaatttgatttcttttgctccctccc
ttcctctttgactgttgtttctctcctccccactgtggcaaccttgatta
ataatttatataattcttctcttcctccattgttaatttattttgtaact
taatagtacattgtaaaaatgtttctgtgttacttgtagatcaagataga
ccaaaatctttgttaccaaacaactgcataccagtgctgatattcactat
tgtttacctagaaagtccacttttctcagtatgaatattcacttaacctc
tcttcttcttttgaaccaatcaaaaaaaaaaaaaaaccaataaaaccctt
gggaataaatgtttagataatcatatttttattttgatgaaataggtgtc
atgtctaggatttctaggtcaaaggatacacacacagacacataattgta
tgcttggagttcagtgaaactgccatatgaaagttgctcttttaaagaag
gaaagaagctatagtagtttcttcccagcactccaagccaccataaaacc
tacgtggactggatgactataaaacgctctcactgtttcctagacgcaca
atttcatgaatgtgaaggcagcttggctccttccctccgggtatagtata
tgccacgtgcaacatttctattgcgagtttctcgctttgctttcctactg
agctgttttctttaggtgtcggtgtgaagatgcccatgaaaaatgttaga
catttccctcacttgctcagcatgcactctgaccatctattcagctagtg
tacccctcgtctcaaagctaggagctacagtcacaggtacaattggttca
tgtgagcacaatgcaatactagacccagacgtagccagtgctcatatac

gaattcacagatatctgagataagcgtctttttaaaattaatttgtgttt
attttatgtacatatgtcttttgcctgcatgtatttctatatgagggtgt
tggatccactggaacaggagttacagttgtgagctgaagtgtgggtgcta
cgaattaaacgtaggtcctctgggacatctcttcagccataagcatctat
ttttagtagaagggctatgatgaaaaagattaggcgaaagttagagactc
aaatcccaattggaaaagtttattactgttatgcaaagtctgtatgatag
accaaaatattgaagagtcttcttccaatagaagactctgtaatcctata
agcaattgatttttgaggtcaaataactttgttgtaaacatctattttga
attataggatatttcatatcatccctgacttggatccaatcaatgtccat
ctcactatgattccacagctagaacccaaatatctcctgagaatgctact
ggtctcttagaagactccatgattgaaagttgctgcaacaggccaatgta
tggctcacactgaccagaagaaatttctgtacacttaattaaggtttata
ttttgtatcaagcctataattaacatcctagagtaatctacgttcaggtc
tctttgatcactggacattttgaatgtcttaggaatggaagaggacagaa
cggtggcttattcatgtcaccccaccagaacccccagactctgagtcttc
ctcatcttactcatcagcaatttccctctattagctgtagaattgactat
ctcatttattcagagaaaagtaaaaaatttctcttgacaatgtattgtct
caaaattactatctttcccccttcacattatgactaatatctttcaatga
cagtctacagtctgactccactcccttttgggcccacattttgtggttcc
cctgactgctgccatccaacatcccaataatcacattagctggtctttcc
taatgacatcaatgtaggaattgatcctcttgattaagccccacatagta
tgatatatcagatcatggcaaggcttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90959694_90960806
seq2: B6Ng01-198C06.b_47_1145 (reverse)

seq1  GTATATGGAGCACTTGCTAACGTCTGGGTCTAAGTATTGCATTGGTTGGC  50
      |||||| ||||||| ||| |||||||||||| ||||||||||||  ||  
seq2  GTATAT-GAGCACTGGCT-ACGTCTGGGTCT-AGTATTGCATTG--TG--  43

seq1  TTCACCATGACCCATTTGTACCCTTGTGACTGTAGCTCCTTAGCTTTGGA  100
       ||| ||||| ||| |||||||  ||||||||||||||| ||||||| ||
seq2  CTCA-CATGAACCAATTGTACC--TGTGACTGTAGCTCC-TAGCTTT-GA  88

seq1  GACGAGGGGTACACTAAGGCTGGATAGATGGGTCAGAGTGCATGCTGAGC  150
      ||||||||||||||||  |||| |||||| ||||||||||||||||||||
seq2  GACGAGGGGTACACTA--GCTGAATAGAT-GGTCAGAGTGCATGCTGAGC  135

seq1  AAGTGAGGGAAATGTCT-ACATTTTTCATGGGCATCTTCACACCGACACC  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTGAGGGAAATGTCTAACATTTTTCATGGGCATCTTCACACCGACACC  185

seq1  TAAAGAAAACAGCTCAGTAGGAAAGCAAAGCGAGAAACTCGCAATAGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAACAGCTCAGTAGGAAAGCAAAGCGAGAAACTCGCAATAGAAA  235

seq1  TGTTGCACGTGGCATATACTATACCCGGAGGAAAGGAGCCAAGCTGCCTT  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTGCACGTGGCATATACTATACCCGGAGGGAAGGAGCCAAGCTGCCTT  285

seq1  CACATTCATGAAATTGTGCGTCTAGGAAACAGTGAGAGCGTTTTATAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATGAAATTGTGCGTCTAGGAAACAGTGAGAGCGTTTTATAGTC  335

seq1  ATCCAGTCCACGTAGGTTTTATGGTGGCTTGGAGTGCTGGGAAGAAACTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCCACGTAGGTTTTATGGTGGCTTGGAGTGCTGGGAAGAAACTA  385

seq1  CTATAGCTTCTTTCCTTCTTTAAAAGAGCAACTTTCATATGGCAGTTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTTCTTTCCTTCTTTAAAAGAGCAACTTTCATATGGCAGTTTCA  435

seq1  CTGAACTCCAAGCATACAATTATGTGTCTGTGTGTGTATCCTTTGACCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCCAAGCATACAATTATGTGTCTGTGTGTGTATCCTTTGACCTA  485

seq1  GAAATCCTAGACATGACACCTATTTCATCAAAATAAAAATATGATTATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTAGACATGACACCTATTTCATCAAAATAAAAATATGATTATCT  535

seq1  AAACATTTATTCCCAAGGGTTTTATTGGTTTTTTTTTTTTTTTGATTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATTCCCAAGGGTTTTATTGGTTTTTTTTTTTTTTTGATTGGT  585

seq1  TCAAAAGAAGAAGAGAGGTTAAGTGAATATTCATACTGAGAAAAGTGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAGAAGAGAGGTTAAGTGAATATTCATACTGAGAAAAGTGGAC  635

seq1  TTTCTAGGTAAACAATAGTGAATATCAGCACTGGTATGCAGTTGTTTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTAAACAATAGTGAATATCAGCACTGGTATGCAGTTGTTTGGT  685

seq1  AACAAAGATTTTGGTCTATCTTGATCTACAAGTAACACAGAAACATTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATTTTGGTCTATCTTGATCTACAAGTAACACAGAAACATTTTT  735

seq1  ACAATGTACTATTAAGTTACAAAATAAATTAACAATGGAGGAAGAGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACTATTAAGTTACAAAATAAATTAACAATGGAGGAAGAGAAGA  785

seq1  ATTATATAAATTATTAATCAAGGTTGCCACAGTGGGGAGGAGAGAAACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAATTATTAATCAAGGTTGCCACAGTGGGGAGGAGAGAAACAA  835

seq1  CAGTCAAAGAGGAAGGGAGGGAGCAAAAGAAATCAAATTTTCCTGTGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAGAGGAAGGGAGGGAGCAAAAGAAATCAAATTTTCCTGTGCAC  885

seq1  AGTACAATGATGTAGATTTTTTTTTTTTATTTTGAATGATGGACAAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATGATGTAGATTTTTTTTTTTTATTTTGAATGATGGACAAGAAG  935

seq1  TCACAGTTAGAACAGTAAGCAGTGAAGTTTAGGAGGATAAAGAATAGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTAGAACAGTAAGCAGTGAAGTTTAGGAGGATAAAGAATAGTAA  985

seq1  GCTGAAGTTTTGCATGCAACTGTTCCCCGTCTGATGATAAAAGAACTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTTTGCATGCAACTGTTCCCCGTCTGATGATAAAAGAACTGAA  1035

seq1  CTATCAAAAGTTCTTCTTCATAGGAAAAAAAAAGTATAAATGCCAAAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAAGTTCTTCTTCATAGGAAAAAAAAAGTATAAATGCCAAAAGA  1085

seq1  TCCATGGTGAATTC  1113
      ||||||||||||||
seq2  TCCATGGTGAATTC  1099


seq1: chr12_90908383_90909464
seq2: B6Ng01-198C06.g_63_1142

seq1  GAATTCACAGATATCTGAGATAAGCGTCTTTTTAAAATTAATTTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATATCTGAGATAAGCGTCTTTTTAAAATTAATTTGTGTTT  50

seq1  ATTTTATGTACATATGTCTTTTGCCTGCATGTATTTCTATATGAGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTACATATGTCTTTTGCCTGCATGTATTTCTATATGAGGGTGT  100

seq1  TGGATCCACTGGAACAGGAGTTACAGTTGTGAGCTGAAGTGTGGGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCACTGGAACAGGAGTTACAGTTGTGAGCTGAAGTGTGGGTGCTA  150

seq1  CGAATTAAACGTAGGTCCTCTGGGACATCTCTTCAGCCATAAGCATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTAAACGTAGGTCCTCTGGGACATCTCTTCAGCCATAAGCATCTAT  200

seq1  TTTTAGTAGAAGGGCTATGATGAAAAAGATTAGGCGAAAGTTAGAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAGAAGGGCTATGATGAAAAAGATTAGGCGAAAGTTAGAGACTC  250

seq1  AAATCCCAATTGGAAAAGTTTATTACTGTTATGCAAAGTCTGTATGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAATTGGAAAAGTTTATTACTGTTATGCAAAGTCTGTATGATAG  300

seq1  ACCAAAATATTGAAGAGTCTTCTTCCAATAGAAGACTCTGTAATCCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATATTGAAGAGTCTTCTTCCAATAGAAGACTCTGTAATCCTATA  350

seq1  AGCAATTGATTTTTGAGGTCAAATAACTTTGTTGTAAACATCTATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGATTTTTGAGGTCAAATAACTTTGTTGTAAACATCTATTTTGA  400

seq1  ATTATAGGATATTTCATATCATCCCTGACTTGGATCCAATCAATGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGATATTTCATATCATCCCTGACTTGGATCCAATCAATGTCCAT  450

seq1  CTCACTATGATTCCACAGCTAGAACCCAAATATCTCCTGAGAATGCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGATTCCACAGCTAGAACCCAAATATCTCCTGAGAATGCTACT  500

seq1  GGTCTCTTAGAAGACTCCATGATTGAAAGTTGCTGCAACAGGCCAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTAGAAGACTCCATGATTGAAAGTTGCTGCAACAGGCCAATGTA  550

seq1  TGGCTCACACTGACCAGAAGAAATTTCTGTACACTTAATTAAGGTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACACTGACCAGAAGAAATTTCTGTACACTTAATTAAGGTTTATA  600

seq1  TTTTGTATCAAGCCTATAATTAACATCCTAGAGTAATCTACGTTCAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATCAAGCCTATAATTAACATCCTAGAGTAATCTACGTTCAGGTC  650

seq1  TCTTTGATCACTGGACATTTTGAATGTCTTAGGAATGGAAGAGGACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATCACTGGACATTTTGAATGTCTTAGGAATGGAAGAGGACAGAA  700

seq1  CGGTGGCTTATTCATGTCACCCCACCAGAACCCCCAGACTCTGAGTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCTTATTCATGTCACCCCACCAGAACCCCCAGACTCTGAGTCTTC  750

seq1  CTCATCTTACTCATCAGCAATTTCCCTCTATTAGCTGTAGAATTGACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTACTCATCAGCAATTTCCCTCTATTAGCTGTAGAATTGACTAT  800

seq1  CTCATTTATTCAGAGAAAAGTAAAAAATTTCTCTTGACAATGTATTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATTCAGAGAAAAGTAAAAAATTTCTCTTGACAATGTATTGTCT  850

seq1  CAAAATTACTATCTTTCCCCCTTCACATTATGACTAATATCTTTCAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACTATCTTTCCCCCTTCACATTATGACTAATATCTTTCAATGA  900

seq1  CAGTCTACAGTCTGACTCCACTCCCTTTT-GGCCCACATTTTGTGGTTCC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTCTACAGTCTGACTCCACTCCCTTTTGGGCCCACATTTTGTGGTTCC  950

seq1  CCTGACTGCTGCCATCCAACATCCCAATAATCACATTAGCTGGTCTTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGCTGCCATCCAACATCCCAATAATCACATTAGCTGGTCTTTCC  1000

seq1  TAAATGACATCAATGTAAGAA-TGATCCTCTTGATTAAAGCCCCACAATA  1048
      | ||||||||||||||| ||| |||||||||||||| ||||||||| |||
seq2  T-AATGACATCAATGTAGGAATTGATCCTCTTGATT-AAGCCCCAC-ATA  1047

seq1  GTATGATATATCAGAATCATTGGCAGGCTTCTTA  1082
      |||||||||||||| ||||| |  ||||||||||
seq2  GTATGATATATCAG-ATCATGGCAAGGCTTCTTA  1080


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