BAC Information

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BAC

Clone NameB6Ng01-198M16
Chromosome12 (Build37)
Map Location 51,496,100 - 51,497,265
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198M16.bB6Ng01-198M16.g
ACCGA020300GA020301
length1,1991,160
definitionB6Ng01-198M16.b B6Ng01-198M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctacactggggaaccaagcattcccaaaaccaagggcttgtc
ctcccattaatgtccaacaaggccatcctctgctacatgtgcagctgaag
tcagggcattctcaatgtatactctttggttagtggtttagttcctgagt
actctaggaggtctagttggttgacatttttgttcttcctatgggatgca
aaccccttcagctccttcagtcctttctctaactctaccattaaggactc
catgctcagtccaatggttggctgcgagcatccacctttgtatttgccag
gctctggcagagcctctcagtaaacagctatatcaggatcctgtcaacaa
gcacttgttggcatatgcaatggtgtctaggtttggtatctgtatatggg
aaagaccccagctggggcactctctggatggaacttattgagaccacctc
cagcagaaagacaggacatcaaatgaggcatggggttgcaacctcacagt
cacatctctgccccagaattgttcctgtgtgaaagaattacagggatgga
aatggagagatgcctgaggaaaagaaggtccagtgacaggcccaaagtgg
gatccagctcaaggggaggtctcaacgcctaacactattactcaggctat
ggagcatttacacaaagggacctattatgactgccctctgaaagatccaa
caagcagctgaaagagtaggatgcagatctttgtacccaaccaatggaca
gaagcagctgacccctgatgttgaatttagggaaggctgatagaagctga
ggagaagagcgatcctgtaggaggatcagcagtgtcaattgaccaagatc
tctcaaacactgggaccaccaaacagacagcatacaccagctgatatgaa
gcccctaacacacatacagtagaggatttccagatctgtgttcattcaga
gatgcacctaaccctcaagagactggaaggttcccaatgattcctacatc
gctgtaatgactttcataatatgttctttgaacatgtagtaatagttgag
caaccgattagcaatatggccagtagccttgtttttgcatcctctaggaa
caaactcaatatggagtattcttttgcccagggcattgaattcactttag
aatccatattccagagagagaaactattatctaaccgtatggtgccaag
gaattctaattaggagtttagccatggacataacattccaagcagaaccc
ttatggcacatttcactttgttgcagctggtgtgtctcaaattcatctcc
ctaagtggttctggattttggttaaccagagactaaaatggatggagatt
ttatgctagtgggatttaatttttaacttgtcaatagttgttccaatttt
caaattggcatgacaagatacaaagacaggattcttacagcaaataaata
taatattttggctccagtctctgttagaatttaatgtaaaaaattattta
aagtgtgggagctttggtatgtgaacttctcataactaagactgtctttt
aaggcagctaacacttattcatgtagagtaggagtttaattaactataca
attacaatggctactaacatgtaattctgttcatctcttattccaaataa
atgtattctaatattcctaagtacataatcatgaaattgttcaaaggtat
tgaagtaatatttaatttcagttattgcagttttaaaatctatatactag
atttattaaatagttcccgaatgatagacagtaagctcagcagtattatt
attaccacaaatcctagtctttatgttcctcatgaagcccattagttgct
atatttcttaattctaagaagggttacctcacttaagctctttccctttt
gatataattgagaaattatttaaaatcacattaatttttccctcaaggaa
acccaaagaaactggaggtgactttcagaacgagtaccgtctagagatag
aatttccatctctaccactgtgagccagtggcatctctagccatgggaat
atggtgatctagaaaattcctgtaagaagacagaagtgggcttaaaggaa
cattatttattttctttcagtttgtatttctatgttaaaagtaattgtag
tttaatactttaaagagaaaagaaagaggagaaatggtttaaagtcccta
gaaatcagtttcataatatttgggtcctccagtcttctgttcagattaaa
caagtactcaaatatgagagaagtgaagagtagctacatatcatgaatct
tacttccgaatggcttctgttggcgatcaaatcacttgatccagcagcca
aaccaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51496100_51497265
seq2: B6Ng01-198M16.g_68_1227 (reverse)

seq1  CATTTT-GTTTTGCTGCTGAATTCAGTGATTTGATCGCCAACAGGAGGCA  49
      |||||| |||| ||||||| ||  |||||||||||||||||||| || ||
seq2  CATTTTGGTTTGGCTGCTGGATCAAGTGATTTGATCGCCAACAGAAGCCA  50

seq1  ATCTGAAAGTAGATTTCCATTGATTAATGTAGCTTACTC-TCACTTCTCT  98
       || |||   |||||  || ||||  ||||||| ||||| ||||||||||
seq2  TTCGGAAGTAAGATT--CA-TGAT--ATGTAGC-TACTCTTCACTTCTCT  94

seq1  CATATTTGAGTTACTTTGTTTAATCTGAACCAAGAGACTGGA-GACCCAA  147
      |||||||||| ||| |||||||||||||| ||  |||||||| |||||||
seq2  CATATTTGAG-TAC-TTGTTTAATCTGAA-CAGAAGACTGGAGGACCCAA  141

seq1  ATA-TATGAACCTGATTTCTAGGACTTTTAAACCATTTCTCTTCTTTTCT  196
      ||| |||||| ||||||||||||   ||||||||||||||| |||||   
seq2  ATATTATGAAACTGATTTCTAGGGACTTTAAACCATTTCTCCTCTTT--C  189

seq1  TTTTCTCTTTAAAGTATT-AACTACAATTACTTTTAACATAGAAATACAA  245
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TTTTCTCTTTAAAGTATTAAACTACAATTACTTTTAACATAGAAATAC-A  238

seq1  AACTGAAAGAAAATAAATAATGTTCC-TTAAGCCCACTTCTGTCTTCTTA  294
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTGAAAGAAAATAAATAATGTTCCTTTAAGCCCACTTCTGTCTTCTTA  288

seq1  CAGGAATTTTCTAGATCACCATATTCCCATGGCTAGAGATGCCACTGGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTTCTAGATCACCATATTCCCATGGCTAGAGATGCCACTGGCT  338

seq1  CACAGTGGTAGAGATGGAAATTCTATCTCTAGACGGTACTCGTTCTGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGTAGAGATGGAAATTCTATCTCTAGACGGTACTCGTTCTGAAA  388

seq1  GTCACCTCCAGTTTCTTTGGGTTTCCTTGAGGGAAAAATTAATGTGATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCCAGTTTCTTTGGGTTTCCTTGAGGGAAAAATTAATGTGATTT  438

seq1  TAAATAATTTCTCAATTATATCAAAAGGGAAAGAGCTTAAGTGAGGTAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTCTCAATTATATCAAAAGGGAAAGAGCTTAAGTGAGGTAAC  488

seq1  CCTTCTTAGAATTAAGAAATATAGCAACTAATGGGCTTCATGAGGAACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTAGAATTAAGAAATATAGCAACTAATGGGCTTCATGAGGAACAT  538

seq1  AAAGACTAGGATTTGTGGTAATAATAATACTGCTGAGCTTACTGTCTATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAGGATTTGTGGTAATAATAATACTGCTGAGCTTACTGTCTATC  588

seq1  ATTCGGGAACTATTTAATAAATCTAGTATATAGATTTTAAAACTGCAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGAACTATTTAATAAATCTAGTATATAGATTTTAAAACTGCAATA  638

seq1  ACTGAAATTAAATATTACTTCAATACCTTTGAACAATTTCATGATTATGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTAAATATTACTTCAATACCTTTGAACAATTTCATGATTATGT  688

seq1  ACTTAGGAATATTAGAATACATTTATTTGGAATAAGAGATGAACAGAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAATATTAGAATACATTTATTTGGAATAAGAGATGAACAGAATT  738

seq1  ACATGTTAGTAGCCATTGTAATTGTATAGTTAATTAAACTCCTACTCTAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAGTAGCCATTGTAATTGTATAGTTAATTAAACTCCTACTCTAC  788

seq1  ATGAATAAGTGTTAGCTGCCTTAAAAGACAGTCTTAGTTATGAGAAGTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGTGTTAGCTGCCTTAAAAGACAGTCTTAGTTATGAGAAGTTC  838

seq1  ACATACCAAAGCTCCCACACTTTAAATAATTTTTTACATTAAATTCTAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAAAGCTCCCACACTTTAAATAATTTTTTACATTAAATTCTAAC  888

seq1  AGAGACTGGAGCCAAAATATTATATTTATTTGCTGTAAGAATCCTGTCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGAGCCAAAATATTATATTTATTTGCTGTAAGAATCCTGTCTT  938

seq1  TGTATCTTGTCATGCCAATTTGAAAATTGGAACAACTATTGACAAGTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTGTCATGCCAATTTGAAAATTGGAACAACTATTGACAAGTTAA  988

seq1  AAATTAAATCCCACTAGCATAAAATCTCCATCCATTTTAGTCTCTGGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATCCCACTAGCATAAAATCTCCATCCATTTTAGTCTCTGGTTA  1038

seq1  ACCAAAATCCAGAACCACTTAGGGAGATGAATTTGAGACACACCAGCTGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATCCAGAACCACTTAGGGAGATGAATTTGAGACACACCAGCTGC  1088

seq1  AACAAAGTGAAATGTGCCATAAGGGTTCTGCTTGGAATGTTATGTCCATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTGAAATGTGCCATAAGGGTTCTGCTTGGAATGTTATGTCCATG  1138

seq1  GCTAAACTCCTAATTAGAATTC  1166
      ||||||||||||||||||||||
seq2  GCTAAACTCCTAATTAGAATTC  1160