BAC Information

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BAC

Clone NameB6Ng01-199L21
Chromosome12 (Build37)
Map Location 58,639,012 - 58,815,282
singlet/doubletdoublet
Overlap geneFoxa1, 4921506M07Rik, EG217600, BC042761
Upstream geneLOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838, LOC100040044
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199L21.bB6Ng01-199L21.g
ACCGA020997GA020998
length1,124963
definitionB6Ng01-199L21.b B6Ng01-199L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,814,195 - 58,815,282)(58,639,012 - 58,639,972)
sequence
gaattctttctatgcctacccacattttgtaacctatcacaggtaccctt
ccccccaccctccccattcccttctgccttcagttttggggctataactg
gctatgtctgctgactcctcttgcctcctctttgacaataatggtgctcc
atacctgtggtggcacgtggcagtagcttgacaaaggctcacactagtcc
cgctcatcagtgcggcttgtttaaaatcctgaaacagttttataagacct
tgttatttttgtcatgggtttctcttaaaacttccttctaactttgattc
cacgtaagtatacataagcattaaaaccgatctcttcctaaagctttgcc
ttttaatcacatccaatgagagtggatagagcaagtaatgagatcattat
taacaccccgagtttatggcactcgcacctaccttaagaaccgggacttt
tcctgcggtgctgccctgtgctatgcagaatctcctgtacttccttttgc
tgcgtataccactagaaacttcccttctcagacagaagaggaaatttccc
ctggaaagaacccttggaattatatgacttgtgaacagttaggcaccagg
ccagtaagtgctaacaaagcactgtatgttgattagttttgtctgaacct
acctttggaatacacacttcttgaagagggtatatgctctggtaaggatc
cagatgccattgtaaagttaaccaaaaaaaaaaaaaaaaatccagaatct
ctaactctaggatgtaaaatttgaaaggacttagggaaaaggttgcttca
aagatattgaaagtgctgagtctgcagcatgaagatctgaagggaaaggc
actggaaatgttcctgatgcatcataaaagtatcatttgcctctcaagcc
attccagccctggaatgcttcctgattcaagctgtccctgggaaggtgag
aacagtccacctgctaattctctcttagttgagatccccacagtaaattc
aattcctcagaaattatcagttctccgggttctcaacagaaaggcttttc
cagtcaattggatccttccacaaaatcaatttttccctggtggaataagg
ttttatatgaacttgtcttgcttc

gaattctctcctgtcgtggttcattcaaaacggttaaactcgagaaaaaa
aaaatgtttaacagtttcagtaaaatccgccttctgaaaaaagaaagcag
aagttaagaacttcactagcatatgcttattttcatcgcttattatttcc
catccgtctttctgaagtgtgggaggccactaagggacaatagaaattgg
attttatctttgagatttgaaggtgatctcggccgatctcacagaaaccg
ggctgagctgccttctgcttgggaacacttcggagtttttagttgcgcta
aatagaatttccttatcttgggctcttttttgttttgttttgttttcaat
caaggtttaaaagggtttcagagctgagcttctaaacacaaggtgaaagt
cattattgaggctcccctcccaggaaggcgctgcactcactacccaaagg
cctttcggtgctactgtttactccgtggcgtggcggatcccacggcccct
ggagctttccacttgggtcagttggaagccttttccctcctcgctgcccc
cgcttccggcccctcccccatcccgagcaaaattcaaaaaaaaaaaaaaa
aaaaaccaccctcagctctggccatttactgagccctgggcgcccacttt
ctggaggatgaagcaacagtgaagaaaacaggacccggggtctaaaacgg
ggtgagggcggaggacgccctggttcgttcgcaggcggtgctctcgggag
ggtccctgcgcgccgctggaagcacagatgttttcttcctgggcccggga
cgcggcgctctggcccgtgcgatccggcgtttgtgtgtcaggttccgaag
gaagggattacgcagcaggagcgactcggcaggcaggctcgcggtgtggg
cttgaaacccagcgcccggtctcctttagtgacttttaggccgtaacctc
acagaagacttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58814195_58815282
seq2: B6Ng01-199L21.b_34_1157 (reverse)

seq1  GAAGCAAGACAAAGTCAT---AAAACTTA-TCCA-CAGGGAAAAA-TGA-  43
      ||||||||||||  ||||   ||| |||| |||| |||||||||| ||| 
seq2  GAAGCAAGACAAGTTCATATAAAACCTTATTCCACCAGGGAAAAATTGAT  50

seq1  TTTGTGGAAGGAT-CAATTGACTG--AAAGC--TTCTG-TGAGAACC--G  85
      ||||||||||||| ||||||||||  |||||  ||||| ||||||||  |
seq2  TTTGTGGAAGGATCCAATTGACTGGAAAAGCCTTTCTGTTGAGAACCCGG  100

seq1  AGAACTGATA--TTCTGA-GAACTG-ATATTCTGT-GGGATCTC-ACT-A  128
      ||||||||||  |||||| ||| || || | |||| |||||||| ||| |
seq2  AGAACTGATAATTTCTGAGGAATTGAATTTACTGTGGGGATCTCAACTAA  150

seq1  GAGAGA--TAGC-GGTGG-CTG-TCTCACCTTCCCAGGGACAGCTTG-AT  172
      ||||||  |||| ||||| ||| |||||||||||||||||||||||| ||
seq2  GAGAGAATTAGCAGGTGGACTGTTCTCACCTTCCCAGGGACAGCTTGAAT  200

seq1  CAGGAAGCA-TCCA-GGCTGGAAT-GCTTGAGAGGCAAATGATAC-TTTA  218
      ||||||||| |||| ||||||||| |||||||||||||||||||| ||||
seq2  CAGGAAGCATTCCAGGGCTGGAATGGCTTGAGAGGCAAATGATACTTTTA  250

seq1  TGATGCACCAGGAACATTTCCAGTGCCTTTCCCTTCAGATCTTCATGCTG  268
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATCAGGAACATTTCCAGTGCCTTTCCCTTCAGATCTTCATGCTG  300

seq1  CAGACTCAGCACTTTCAAT-TCTTTGAAGCAACCTTTTCCCTAAGTCC-T  316
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CAGACTCAGCACTTTCAATATCTTTGAAGCAACCTTTTCCCTAAGTCCTT  350

seq1  TCAAATTTTACATCCTAGAGTTAGAGATTCTGGA-TTTTTTTTTTTTTTT  365
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAAATTTTACATCCTAGAGTTAGAGATTCTGGATTTTTTTTTTTTTTTT  400

seq1  TGGTTAACTTTACAATGGCATCTGGATCCTTACCAGAGCATATACCCTCT  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAACTTTACAATGGCATCTGGATCCTTACCAGAGCATATACCCTCT  450

seq1  TCAAGAAGTGTGTATTCCAAAGGTAGGTTCAGACAAAACTAATCAACATA  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTGTGTATTCCAAAGGTAGGTTCAGACAAAACTAATCAACATA  500

seq1  CAGTGCTTTGTTAGCACTTACTGGCCTGGTGCCTAACTGTTCACAAGTCA  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGTTAGCACTTACTGGCCTGGTGCCTAACTGTTCACAAGTCA  550

seq1  TATAATTCCAAGGGTTCTTTCCAGGGG-AATTTCCTCTTCTGTCTGAGAA  564
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATAATTCCAAGGGTTCTTTCCAGGGGAAATTTCCTCTTCTGTCTGAGAA  600

seq1  GGGAAGTTTCTAGTGGTATACGCAGCAAAAGGAAGTACAGGAGATTCTGC  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTTCTAGTGGTATACGCAGCAAAAGGAAGTACAGGAGATTCTGC  650

seq1  ATAGCACAGGGCAGCACCGCAGGAAAAGTCCCGGTTCTTAAGGTAGGTGC  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAGGGCAGCACCGCAGGAAAAGTCCCGGTTCTTAAGGTAGGTGC  700

seq1  GAGTGCCATAAACTCGGGGTGTTAATAATGATCTCATTACTTGCTCTATC  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCATAAACTCGGGGTGTTAATAATGATCTCATTACTTGCTCTATC  750

seq1  CACTCTCATTGGATGTGATTAAAAGGCAAAGCTTTAGGAAGAGATCGGTT  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATTGGATGTGATTAAAAGGCAAAGCTTTAGGAAGAGATCGGTT  800

seq1  TTAATGCTTATGTATACTTACGTGGAATCAAAGTTAGAAGGAAGTTTTAA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTATGTATACTTACGTGGAATCAAAGTTAGAAGGAAGTTTTAA  850

seq1  GAGAAACCCATGACAAAAATAACAAGGTCTTATAAAACTGTTTCAGGATT  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCATGACAAAAATAACAAGGTCTTATAAAACTGTTTCAGGATT  900

seq1  TTAAACAAGCCGCACTGATGAGCGGGACTAGTGTGAGCCTTTGTCAAGCT  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGCCGCACTGATGAGCGGGACTAGTGTGAGCCTTTGTCAAGCT  950

seq1  ACTGCCACGTGCCACCACAGGTATGGAGCACCATTATTGTCAAAGAGGAG  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACGTGCCACCACAGGTATGGAGCACCATTATTGTCAAAGAGGAG  1000

seq1  GCAAGAGGAGTCAGCAGACATAGCCAGTTATAGCCCCAAAACTGAAGGCA  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAGTCAGCAGACATAGCCAGTTATAGCCCCAAAACTGAAGGCA  1050

seq1  GAAGGGAATGGGGAGGGTGGGGGGAAGGGTACCTGTGATAGGTTACAAAA  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAATGGGGAGGGTGGGGGGAAGGGTACCTGTGATAGGTTACAAAA  1100

seq1  TGTGGGTAGGCATAGAAAGAATTC  1088
      ||||||||||||||||||||||||
seq2  TGTGGGTAGGCATAGAAAGAATTC  1124


seq1: chr12_58639012_58639972
seq2: B6Ng01-199L21.g_65_1027

seq1  GAATTCTCTCCTGTCGTGGTTCATTCAAAACGGTTAAACTCGAGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTGTCGTGGTTCATTCAAAACGGTTAAACTCGAGAAAAAA  50

seq1  AAAATGTTTAACAGTTTCAGTAAAATCCGCCTTCTGAAAAAAGAAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAACAGTTTCAGTAAAATCCGCCTTCTGAAAAAAGAAAGCAG  100

seq1  AAGTTAAGAACTTCACTAGCATATGCTTATTTTCATCGCTTATTATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGAACTTCACTAGCATATGCTTATTTTCATCGCTTATTATTTCC  150

seq1  CATCCGTCTTTCTGAAGTGTGGGAGGCCACTAAGGGACAATAGAAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTCTTTCTGAAGTGTGGGAGGCCACTAAGGGACAATAGAAATTGG  200

seq1  ATTTTATCTTTGAGATTTGAAGGTGATCTCGGCCGATCTCACAGAAACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTTTGAGATTTGAAGGTGATCTCGGCCGATCTCACAGAAACCG  250

seq1  GGCTGAGCTGCCTTCTGCTTGGGAACACTTCGGAGTTTTTAGTTGCGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCTGCCTTCTGCTTGGGAACACTTCGGAGTTTTTAGTTGCGCTA  300

seq1  AATAGAATTTCCTTATCTTGGGCTCTTTTTTGTTTTGTTTTGTTTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTTCCTTATCTTGGGCTCTTTTTTGTTTTGTTTTGTTTTCAAT  350

seq1  CAAGGTTTAAAAGGGTTTCAGAGCTGAGCTTCTAAACACAAGGTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTAAAAGGGTTTCAGAGCTGAGCTTCTAAACACAAGGTGAAAGT  400

seq1  CATTATTGAGGCTCCCCTCCCAGGAAGGCGCTGCACTCACTACCCAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGAGGCTCCCCTCCCAGGAAGGCGCTGCACTCACTACCCAAAGG  450

seq1  CCTTTCGGTGCTACTGTTTACTCCGTGGCGTGGCGGATCCCACGGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGGTGCTACTGTTTACTCCGTGGCGTGGCGGATCCCACGGCCCCT  500

seq1  GGAGCTTTCCACTTGGGTCAGTTGGAAGCCTTTTCCCTCCTCGCTGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTCCACTTGGGTCAGTTGGAAGCCTTTTCCCTCCTCGCTGCCCC  550

seq1  CGCTTCCGGCCCCTCCCCCATCCCGAGCAAAATTCAAAAAAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCGGCCCCTCCCCCATCCCGAGCAAAATTCAAAAAAAAAAAAAAA  600

seq1  AAAAACCACCCTCAGCTCTGGCCATTTACTGAGCCCTGGGCGCCCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACCCTCAGCTCTGGCCATTTACTGAGCCCTGGGCGCCCACTTT  650

seq1  CTGGAGGATGAAGCAACAGTGAAGAAAACAGGACCCGGGGTCTAAAACGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGATGAAGCAACAGTGAAGAAAACAGGACCCGGGGTCTAAAACGG  700

seq1  GGTGAGGGCGGAGGACGCCCTGG-TCGTTCGCAGGCGGTGCTCTCGGGAG  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTGAGGGCGGAGGACGCCCTGGTTCGTTCGCAGGCGGTGCTCTCGGGAG  750

seq1  GGTCCCTGCGCGCCGCTGGAAGCACAGATGTTTTCTTCCTGG--CCCGGA  797
      ||||||||||||||||||||||||||||||||||||||||||  || |||
seq2  GGTCCCTGCGCGCCGCTGGAAGCACAGATGTTTTCTTCCTGGGCCCGGGA  800

seq1  CGCGGCGCCCTGG-CCGGGCGATCCGGCGTTTGTGTGTCAGGGTTTCCG-  845
      |||||||| |||| ||| ||||||||||||||||||||||||  ||||| 
seq2  CGCGGCGCTCTGGCCCGTGCGATCCGGCGTTTGTGTGTCAGG--TTCCGA  848

seq1  AGGAAGGGATTACGCAGCGGGAGCGACTCGGCCAGGCAGGC-CGCGGGGT  894
      |||||||||||||||||| |||||||||||| ||||||||| ||||| ||
seq2  AGGAAGGGATTACGCAGCAGGAGCGACTCGG-CAGGCAGGCTCGCGGTGT  897

seq1  GGGCTTGAAACCCGGCGCCCGGTCTCCTTTGTTGACTTTTAGGTCTGTAG  944
      ||||||||||||| ||||||||||||||||  ||||||||||| | ||| 
seq2  GGGCTTGAAACCCAGCGCCCGGTCTCCTTTAGTGACTTTTAGG-CCGTAA  946

seq1  CTCAACAGAAGATTTAT  961
      |   |||||||| ||||
seq2  CCTCACAGAAGACTTAT  963


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