BAC Information

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BAC

Clone NameB6Ng01-200L20
Chromosome12 (Build37)
Map Location 97,658,165 - 97,659,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L20.bB6Ng01-200L20.g
ACCGA021716GA021717
length1,1861,164
definitionB6Ng01-200L20.b B6Ng01-200L20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacctatcaacttgcaaatctacttaaggactttcaaaccataa
ggtcaagcaatgattctttaggtcattgtggcttttggatgtggctgctc
cctgtgttatttgattaagagggtggcctgaggtcacatggctatcctta
acaaggaacaattacagaggactggcacacatatgatgttattttacaaa
gtatatgtagcccctttctccattttccccatgtaaaacaatgctataaa
tgcattgaaataattatatcagacactaaagccatcattgtgacatttga
ggtttctgtttaaaagtaaattcctactgtataataaagactcattgagc
tcagttgtatcatatagtaaattaaaccacacatccctttacttctaagt
atacattcgaattactttccttgatgctataggtaagtgcctgtcaaaat
ctactatggagaatggggagcttagcttatttcagaacatacttccagag
tacatttccttcatggaggatatgccacggaagaagcagcaagagacctg
tgtatgttttcagaatctggagagaattgaatgcttgttctcagctcact
ttatctttttcaatcagtgtaagagcctatcccagagaagattgactctt
atatttaccggcgtattcttatatcagttcactaaaaataaagtctccct
caaggatgttccaaactttatgttctttctcactcttgaaacaaaaacaa
aacaaacaaacaaaaaacaaaacaaaaaacaaaaagcacagacaaataag
taaattcaattcattaaatcaaaacacatggcccatttggttttaggtaa
tgcctccttagtttgaggctatatctcagagtatagatgatatattctgt
ttcattacattaaatgcaactaatcttccttctagtagttttcagttgta
aaatagctttttggctaggagtgaataccttttaccctacttctctgtga
tgacatttttgcttagcttcagcattttgggctaaagagggtcccattat
acaactgaaatattaaaggcctctgcaaaggctgttgtttacctcacaca
actgaaagtaacctatggttgaagacttcacatgctattggtcatcaatt
gctgaatgcttatgagattttaatagaaaaatttct

gaattcaggttcacttgaaatgaagcaagtaactttagctgctgatctat
ttctccagcatccagactctaattataaaaatcagatttaggttgagtat
aagtacacatgtgaacctggacctcaaaaacaaagcatattaattaacag
acaataacagctgcagaataaaatataacacaaaaaggtcaatcgctagg
agtatctcagagggcaaatcatagaaaagacaccatgtctcaactgtttt
actatcttagttaatttaagtactagttatatttaatgcctatctcataa
atgatattgaaaaagaaatgtcaaaaaaaagaaaagaaaaaagaaagaaa
aaagggaaagaattttctcctatgctggatgtatgctggatggttttatg
tcaacttgagacagcaaacgtaatctgagaatggggcgacccaaatgaca
aaacagtcttcaaatgattaggctgtacagagtaatttttatttttattt
ttattttttgattattttatttcattgatttttgaacatcttattgctta
ttttattttcatttcaaatgttaaatcccttaccagtttccccttgccaa
actctctatttcctcccttaccccctgcctctatgaggatgctcccccac
cttcccacccactcatgcctcagtgccctagcattcccctaccctgggag
cctctacaagaccaaggggctcccctcctggtaatgatcctctgctacat
atgcagctggagccatgggtagccccatgtgtactctttgggttggtggt
ttagtcccagggagcttcaggtgttctggttggttgatattgttgttctt
cctttggggttgcaaagcccttcagctccctcagtcctgccctaaatcct
ccatttggtgtccctcccccatcccccaacccaccttccacactctgttt
gggttgcctgatctgcatctatattggtggaggctctggcagaggttcct
cacagactagctttaccaagtctcttatccagcaaccactttattattta
ttatttattattattgacattgaacgttgtttcattgcccagcttcgcct
ttgccaccctacagtccatcgctccatgaattacagaaggatcgctcagc
acctgacagtagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97658165_97659349
seq2: B6Ng01-200L20.b_51_1236

seq1  GAATTCTACCTATCAACTTGCAAATCTACTTAAGGACTTTCAAACCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTATCAACTTGCAAATCTACTTAAGGACTTTCAAACCATAA  50

seq1  GGTCAAGCAATGATTCTTTAGGTCATTGTGGCTTTTGGATGTGGCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCAATGATTCTTTAGGTCATTGTGGCTTTTGGATGTGGCTGCTC  100

seq1  CCTGTGTTATTTGATTAAGAGGGTGGCCTGAGGTCACATGGCTATCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTATTTGATTAAGAGGGTGGCCTGAGGTCACATGGCTATCCTTA  150

seq1  ACAAGGAACAATTACAGAGGACTGGCACACATATGATGTTATTTTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAACAATTACAGAGGACTGGCACACATATGATGTTATTTTACAAA  200

seq1  GTATATGTAGCCCCTTTCTCCATTTTCCCCATGTAAAACAATGCTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTAGCCCCTTTCTCCATTTTCCCCATGTAAAACAATGCTATAAA  250

seq1  TGCATTGAAATAATTATATCAGACACTAAAGCCATCATTGTGACATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAAATAATTATATCAGACACTAAAGCCATCATTGTGACATTTGA  300

seq1  GGTTTCTGTTTAAAAGTAAATTCCTACTGTATAATAAAGACTCATTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTTTAAAAGTAAATTCCTACTGTATAATAAAGACTCATTGAGC  350

seq1  TCAGTTGTATCATATAGTAAATTAAACCACACATCCCTTTACTTCTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTATCATATAGTAAATTAAACCACACATCCCTTTACTTCTAAGT  400

seq1  ATACATTCGAATTACTTTCCTTGATGCTATAGGTAAGTGCCTGTCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCGAATTACTTTCCTTGATGCTATAGGTAAGTGCCTGTCAAAAT  450

seq1  CTACTATGGAGAATGGGGAGCTTAGCTTATTTCAGAACATACTTCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATGGAGAATGGGGAGCTTAGCTTATTTCAGAACATACTTCCAGAG  500

seq1  TACATTTCCTTCATGGAGGATATGCCACGGAAGAAGCAGCAAGAGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCTTCATGGAGGATATGCCACGGAAGAAGCAGCAAGAGACCTG  550

seq1  TGTATGTTTTCAGAATCTGGAGAGAATTGAATGCTTGTTCTCAGCTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTTCAGAATCTGGAGAGAATTGAATGCTTGTTCTCAGCTCACT  600

seq1  TTATCTTTTTCAATCAGTGTAAGAGCCTATCCCAGAGAAGATTGACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTTCAATCAGTGTAAGAGCCTATCCCAGAGAAGATTGACTCTT  650

seq1  ATATTTACCGGCGTATTCTTATATCAGTTCACTAAAAATAAAGTCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACCGGCGTATTCTTATATCAGTTCACTAAAAATAAAGTCTCCCT  700

seq1  CAAGGATGTTCCAAACTTTATGTTCTTTCTCACTCTTGAAACAAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGTTCCAAACTTTATGTTCTTTCTCACTCTTGAAACAAAAACAA  750

seq1  AACAAACAAACAAAAAACAAAAACAAAAACAAAAAGCACAGACAAATAAG  800
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAACAAAACAAAAAACAAAAAGCACAGACAAATAAG  800

seq1  TAAATTCAATTCATTAAATCAAAACACATGGCCCATTTGGTTTTAGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAATTCATTAAATCAAAACACATGGCCCATTTGGTTTTAGGTAA  850

seq1  TGCCTCCTTAGTTTGAGGCTATATCTCAGAGTATAGATGATATATTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTAGTTTGAGGCTATATCTCAGAGTATAGATGATATATTCTGT  900

seq1  TTCATTACATTAAATGCAACTAATCTTCCTTCTAGTAGTTTTCAGTTGT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCATTACATTAAATGCAACTAATCTTCCTTCTAGTAGTTTTCAGTTGTA  950

seq1  AAATAGCTTTTTGGCTAGGAGTG-ATACCTTTTA-CCTACTTCTCTGTGA  997
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AAATAGCTTTTTGGCTAGGAGTGAATACCTTTTACCCTACTTCTCTGTGA  1000

seq1  TGACA-TTTTGCTTAGCTTCAGCATTTT-GGCTAAAGAGGGTCCCA-TAT  1044
      ||||| |||||||||||||||||||||| ||||||||||||||||| |||
seq2  TGACATTTTTGCTTAGCTTCAGCATTTTGGGCTAAAGAGGGTCCCATTAT  1050

seq1  ACAACCTGAAAATATTAAAGGCCTCTGCCAAGGCTGTTGTTTACTCAACA  1094
      |||| ||| ||||||||||||||||||| |||||||||||||||   |||
seq2  ACAA-CTG-AAATATTAAAGGCCTCTGCAAAGGCTGTTGTTTACCTCACA  1098

seq1  CAACCTGAGAGTAACCCTATGGTTGAAGACTTCACAATGTTATT-GTCAT  1143
      ||| |||| ||||| |||||||||||||||||||| ||| |||| |||||
seq2  CAA-CTGAAAGTAA-CCTATGGTTGAAGACTTCAC-ATGCTATTGGTCAT  1145

seq1  CAAATGGTGAATGCTTAATGAGATGTTTAAT-TAGAAATTTCT  1185
      ||| || ||||||||| ||||||| ||||||  | ||||||||
seq2  CAATTGCTGAATGCTT-ATGAGAT-TTTAATAGAAAAATTTCT  1186


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