BAC Information

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BAC

Clone NameB6Ng01-200N13
Chromosome12 (Build37)
Map Location 15,426,211 - 15,593,693
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N13.bB6Ng01-200N13.g
ACCGA021793GA021794
length1,1651,128
definitionB6Ng01-200N13.b B6Ng01-200N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,426,211 - 15,427,332)(15,592,566 - 15,593,693)
sequence
gaattccatacaatgtattttgatcatattcacaccttctcccacactcc
gaaggtccatgacctcttccttaaacaccgcccaattttgtgtcctctta
aaaaaaactattaaatatacgttgtaccaccaatatactcttgaatgtgt
ggcttcactggagcattgtttatctaccaggggtcatgcccttcacgaaa
actaacttcccctcttctagcaactatctattgctgttagcccaattttt
aggagtgggacttttttgcccacctgccagaattatatttgccttgagct
tgcacagatctgtatactgcctgaaatgctctatacagaaatataactca
acctgtgtccttgtagtcccccaccacctctgtgtctaagaatctttcta
gcccctctgccacaatgattcttcagctaaagaagcagaagtcctgtgat
agatatctcacacaggactgagcagtccaccccctcttattgcctgtacc
tttaccagttttgtctctgtattaatcaccttcttcagaaaaaaaaaaaa
aaaaagtagctccgcccatgagtatgtacagatggtgagccttcaaaata
actttaaaagcaagccaagactcagaggatgaggctgtagttcagtgaca
caatgcagcttgtgtcctggtcctgagagaaggggaagaaaaaggggaaa
agaggaggtagaaaaattcattcaaaacaactaactaagaaaagataaaa
gactggtaaggaaaatgaaaacatcttctctagtgatattgtgtcatggg
cagatggaactggcattatataggaataaaactaatatataagatgattt
aaatgggatttccagttttattttaaaggtcttaatgactgcatacactt
ttaaaacctttccatgcaacgaaattgtctgtaattaacacagacaaagc
cctttcaagtttcccagagcacaaatacaaaatacaaagtatattcatgc
tcattgcccttatagagccaatatctagcatcatcacacctaagatgttc
tgtgtgctcttgcataaaaagagagttggcctatggccatcaatagtttt
atggattgtttgaatcatagactgctgtcattggcagcatagatattcat
tgtcaatacagcagc

gaattcatgttatcaagagtgatgctaaaatatctctagaaggtatgtgg
attattcactgtcatgacttctagtggcagaggtaattttcttaaatgaa
gttaagttttagggggagcattggggtttcagcagtcagagcacctcctt
attattcttcctttcatcctaatggcctgttcatcttttttatatgcaca
ccccccactgtgtctcatgctggacaccctctgtatgagagctgctgccg
ccttcatctttcagagtaggcttagtccagtgggtctgtgctgaatttgt
ggtgaccacttgaagactcgctgttactgtaaccctgctgtgttgttttg
ttttcaatcttggagatgttgtaagatggaaaactgctgtgcagattctg
accttattataatgatttttaatgtcttatgtggaaatagacctgactaa
cacgtgtgtctcaaaattaattttttctacttaccgttttgcttgtgaaa
aagatgtctccatccctacagaacatggagattgggctaggcagtattct
tgctggatagacacagttgaaaataaatatgaaaaataatgaataaacat
tagaataaaaaataagcatttgaagtataattcagtgggctgaatgaaag
tttataaggtagggcttcatatgttaccatagactagacaatctctctaa
atagtgaaaaggaagttgaaacttgaatataataatccgatgcaaatcat
accacagcaagtcatgcattgctcctgtgccaggcagatcacactttcca
aaaccatttaacagctcccagggagctgtgtgcttctgagtgatttacct
aattagagatttgatagttctatggcagccaactcttgctttgcacagac
tttctataaacccaggctctacatcaggaacagattgtacatttcagact
ccagtagccaaggagtgagagtgctttgtctaaggcacttgcagaattac
agttgtagatattactctcatgtctcaaagaacagcttccagctggtcat
gctgaaaccacggagcttgagccatatgtatcagcttgggatctttttga
acactttatgctcatttggtttggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_15426211_15427332
seq2: B6Ng01-200N13.b_98_1210

seq1  AGGTCCATGACCTCTTCCTTAAACACCGCCCAATTTTGTGTCCTCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCATGACCTCTTCCTTAAACACCGCCCAATTTTGTGTCCTCTTAAA  50

seq1  AAAAACTATTAAATATACGTTGTACCACCAATATACTCTTGAATGTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATTAAATATACGTTGTACCACCAATATACTCTTGAATGTGTGG  100

seq1  CTTCACTGGAGCATTGTTTATCTACCAGGGGTCATGCCCTTCACGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGGAGCATTGTTTATCTACCAGGGGTCATGCCCTTCACGAAAAC  150

seq1  TAACTTCCCCTCTTCTAGCAACTATCTATTGCTGTTAGCCCAATTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCCCTCTTCTAGCAACTATCTATTGCTGTTAGCCCAATTTTTAG  200

seq1  GAGTGGGACTTTTTTGCCCACCTGCCAGAATTATATTTGCCTTGAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGACTTTTTTGCCCACCTGCCAGAATTATATTTGCCTTGAGCTTG  250

seq1  CACAGATCTGTATACTGCCTGAAATGCTCTATACAGAAATATAACTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCTGTATACTGCCTGAAATGCTCTATACAGAAATATAACTCAAC  300

seq1  CTGTGTCCTTGTAGTCCCCCACCACCTCTGTGTCTAAGAATCTTTCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTTGTAGTCCCCCACCACCTCTGTGTCTAAGAATCTTTCTAGC  350

seq1  CCCTCTGCCACAATGATTCTTCAGCTAAAGAAGCAGAAGTCCTGTGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCACAATGATTCTTCAGCTAAAGAAGCAGAAGTCCTGTGATAG  400

seq1  ATATCTCACACAGGACTGAGCAGTCCACCCCCTCTTATTGCCTGTACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACACAGGACTGAGCAGTCCACCCCCTCTTATTGCCTGTACCTT  450

seq1  TACCAGTTTTGTCTCTGTATTAATCACCTTCTTCAGAAAAAAAAAAAAAA  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACCAGTTTTGTCTCTGTATTAATCACCTTCTTCAG-AAAAAAAAAAAAA  499

seq1  AAAAGTAGCTCCGCCCATGAGTATGTACAGATGGTGAGCCTTCAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCTCCGCCCATGAGTATGTACAGATGGTGAGCCTTCAAAATAA  549

seq1  CTTTAAAAGCAAGCCAAGACTCAGAGGATGAGGCTGTAGTTCAGTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGCAAGCCAAGACTCAGAGGATGAGGCTGTAGTTCAGTGACAC  599

seq1  AATGCAGCTTGTGTCCTGGTCCTGAGAGAAGGGGAAGAAAAAGGGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCTTGTGTCCTGGTCCTGAGAGAAGGGGAAGAAAAAGGGGAAAA  649

seq1  GAGGAGGTAGAAAAATTCATTCAAAACAACTAACTAAGAAAAGATAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTAGAAAAATTCATTCAAAACAACTAACTAAGAAAAGATAAAAG  699

seq1  ACTGGTAAGGAAAATGAAAACATCTTCTCTAGTGATATTGTGTCATGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAGGAAAATGAAAACATCTTCTCTAGTGATATTGTGTCATGGGC  749

seq1  AGATGGAACTGGCATTATATAGGAATAAAACTAATATATAAGATGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAACTGGCATTATATAGGAATAAAACTAATATATAAGATGATTTA  799

seq1  AATGGGATTTCCAGTTT--ATTTAAGGGTCTTAATGACTGCATACAC-TT  847
      |||||||||||||||||   ||||| ||||||||||||||||||||| ||
seq2  AATGGGATTTCCAGTTTTATTTTAAAGGTCTTAATGACTGCATACACTTT  849

seq1  TAAAACC-TTCCATGCAACG-AATTGTCTGTAAATAACACAGACAAAG-C  894
      ||||||| |||||||||||| |||||||||||| |||||||||||||| |
seq2  TAAAACCTTTCCATGCAACGAAATTGTCTGTAATTAACACAGACAAAGCC  899

seq1  CTTTCAAGGTTCCCAGAGCACAAAATACAAAATACAAAGTATATTCAATG  944
      |||||||| |||||||||||| |||||||||||||||||||||||| |||
seq2  CTTTCAAGTTTCCCAGAGCAC-AAATACAAAATACAAAGTATATTC-ATG  947

seq1  CTCATTG-CCTTATAAGAGCCAAATATCTAAGCATCCATCACACCTAAGA  993
      ||||||| |||||| |||||| ||||||| ||||| ||||||||||||||
seq2  CTCATTGCCCTTAT-AGAGCC-AATATCT-AGCAT-CATCACACCTAAGA  993

seq1  TGTTCTGTGTGCTCTTGCATTAAAAAAGAGGAGTTTGGCTAATGGCATCA  1043
      ||||||||||||||||||||  ||||||| ||||| | |||  | |||||
seq2  TGTTCTGTGTGCTCTTGCAT--AAAAAGA-GAGTTGGCCTATGGCCATCA  1040

seq1  ATAGTTTTAATGAGTGTTTGAATCATAGAAGTGCTGTCATGGGCAGCATA  1093
      |||||||||  || |||||||||||||| | ||||||||| |||||||||
seq2  ATAGTTTTATGGATTGTTTGAATCATAG-ACTGCTGTCATTGGCAGCATA  1089

seq1  GGTATATATTTCATTGTTAATACAGCAGC  1122
      | ||     |||||||| |||||||||||
seq2  GATA-----TTCATTGTCAATACAGCAGC  1113


seq1: chr12_15592566_15593693
seq2: B6Ng01-200N13.g_67_1194 (reverse)

seq1  ATCCCAAAACAAAATGAAGCATAAAGTGT--CAAAAGATCCAAGGCTGAT  48
      ||||| |||| ||||| ||||||||||||   ||||||||| | ||||||
seq2  ATCCCCAAACCAAATG-AGCATAAAGTGTTCAAAAAGATCCCAAGCTGAT  49

seq1  ACATAT-GCTCAGGCTCCGT-GTTTCAGCATTGACCAGCTGGAAGCCTGT  96
      |||||| ||||| ||||||| ||||||||| |||||||||||||||   |
seq2  ACATATGGCTCAAGCTCCGTGGTTTCAGCA-TGACCAGCTGGAAGCTGTT  98

seq1  CTTTGAAGAACATGGAGAGTATAATCTACAACTGTAATTCTGCAAGTGCC  146
      ||||||   |||| |||||||  |||||||||||||||||||||||||||
seq2  CTTTGA--GACAT-GAGAGTAATATCTACAACTGTAATTCTGCAAGTGCC  145

seq1  TTAGACAAAGCACTCTCCCTCCTTGGCTACTGGAGTCTGAAGTGTAC-AT  195
      ||||||||||||||||| ||||||||||||||||||||||| ||||| ||
seq2  TTAGACAAAGCACTCTCACTCCTTGGCTACTGGAGTCTGAAATGTACAAT  195

seq1  CTGTTCCTGATGTAGAGCCTGGGTTTATAGAAAGTCTGTGCAAAGCAAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTGATGTAGAGCCTGGGTTTATAGAAAGTCTGTGCAAAGCAAGA  245

seq1  GTTGGCTGCCATAGAACTATCAAATCTCTAATTAGGTAAATCACTCAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGCCATAGAACTATCAAATCTCTAATTAGGTAAATCACTCAGAA  295

seq1  GCACACAGCTCCCTGGGAGCTGTTAAATGGTTTTGGAAAGTGTGATCTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCTCCCTGGGAGCTGTTAAATGGTTTTGGAAAGTGTGATCTGC  345

seq1  CTGGCACAGGAGCAATGCATGACTTGCTGTGGTATGATTTGCATCGGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAGGAGCAATGCATGACTTGCTGTGGTATGATTTGCATCGGATT  395

seq1  ATTATATTCAAGTTTCAACTTCCTTTTCACTATTTAGAGAGATTGTCTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTCAAGTTTCAACTTCCTTTTCACTATTTAGAGAGATTGTCTAG  445

seq1  TCTATGGTAACATATGAAGCCCTACCTTATAAACTTTCATTCAGCCCACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTAACATATGAAGCCCTACCTTATAAACTTTCATTCAGCCCACT  495

seq1  GAATTATACTTCAAATGCTTATTTTTTATTCTAATGTTTATTCATTATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATACTTCAAATGCTTATTTTTTATTCTAATGTTTATTCATTATTT  545

seq1  TTCATATTTATTTTCAACTGTGTCTATCCAGCAAGAATACTGCCTAGCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTATTTTCAACTGTGTCTATCCAGCAAGAATACTGCCTAGCCC  595

seq1  AATCTCCATGTTCTGTAGGGATGGAGACATCTTTTTCACAAGCAAAACGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATGTTCTGTAGGGATGGAGACATCTTTTTCACAAGCAAAACGG  645

seq1  TAAGTAGAAAAAATTAATTTTGAGACACACGTGTTAGTCAGGTCTATTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAAAAAATTAATTTTGAGACACACGTGTTAGTCAGGTCTATTTC  695

seq1  CACATAAGACATTAAAAATCATTATAATAAGGTCAGAATCTGCACAGCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGACATTAAAAATCATTATAATAAGGTCAGAATCTGCACAGCAG  745

seq1  TTTTCCATCTTACAACATCTCCAAGATTGAAAACAAAACAACACAGCAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCTTACAACATCTCCAAGATTGAAAACAAAACAACACAGCAGG  795

seq1  GTTACAGTAACAGCGAGTCTTCAAGTGGTCACCACAAATTCAGCACAGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTAACAGCGAGTCTTCAAGTGGTCACCACAAATTCAGCACAGAC  845

seq1  CCACTGGACTAAGCCTACTCTGAAAGATGAAGGCGGCAGCAGCTCTCATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGACTAAGCCTACTCTGAAAGATGAAGGCGGCAGCAGCTCTCATA  895

seq1  CAGAGGGTGTCCAGCATGAGACACAGTGGGGGGTGTGCATATAAAAAAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTGTCCAGCATGAGACACAGTGGGGGGTGTGCATATAAAAAAGA  945

seq1  TGAACAGGCCATTAGGATGAAAGGAAGAATAATAAGGAGGTGCTCTGACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGCCATTAGGATGAAAGGAAGAATAATAAGGAGGTGCTCTGACT  995

seq1  GCTGAAACCCCAATGCTCCCCCTAAAACTTAACTTCATTTAAGAAAATTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCCCAATGCTCCCCCTAAAACTTAACTTCATTTAAGAAAATTA  1045

seq1  CCTCTGCCACTAGAAGTCATGACAGTGAATAATCCACATACCTTCTAGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCACTAGAAGTCATGACAGTGAATAATCCACATACCTTCTAGAG  1095

seq1  ATATTTTAGCATCACTCTTGATAACATGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCATCACTCTTGATAACATGAATTC  1128


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