BAC Information

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BAC

Clone NameB6Ng01-201L16
Chromosome12 (Build37)
Map Location 119,626,401 - 119,627,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201L16.bB6Ng01-201L16.g
ACCGA022420GA022421
length1,1941,114
definitionB6Ng01-201L16.b B6Ng01-201L16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttgctgagatgactctttttctgtcctttccccatgaggtag
tacctgtcttttgtggtaaggtacatttcttggaggctacaaataaatgg
ctcctgctgtttcatccaacctacatccaacctgtgtgctttgctttgag
gaattgcgacccttgatattcagagcaattactgaaaggtatgaattgat
acttgccattttgttgagtctgtagttggttcttccctcttcctctcttg
tttaagaatcattctatcatggtctattctttttctcaggccttacggat
ggacttgcctttctcatcaatacagataatcccttcacgcacaagtactt
ttccatagatctggccataagttcctttagcctatttttttctagagaaa
gattttgtttctccttcaagtattacaggtagctttgctgggtagtagtc
tgggtcctagtgtaggttgaccattgttatcttcctgaacttgaaacaca
ttctcctaaaggcctttctgagctttaagtttcagttgacaagtctatgg
tcaatctaatgtgcatgtctttgtatgagacttaaactttctccaccacc
attttcaatatactttttttgttctgttttttgtttgtttttggtttttg
ttttagtggtttggttctcataggatgaaggaggatcttttctggtcttt
tccgtttggtgttctaaaagcttcctctatctggtttggcatctttatga
actcttaagaaatacactattatgattctttagaaaatgatttctatgcc
tgtagagtgagagtctcttctatctgcatgcctgttatctgtactttggt
attttcagtgtcatgtgtatcttagaatttctacttataccctcttatta
tttcatccttatccttgctggatcgttccagctcctccaccttgtcaagt
tcaagtgttctgtcctctcttgatcattctgttgctagagcttccatgat
gcttttatttgacctactgggtttttcaatttccaggaattcaatgtccg
ttttctccaaggttcccttctctcctgccgaattccctttcgaagaatgg
tatataccacaatactatttcattcccgactggtgggtgcctgaacgaaa
gacctattttctctcttgaattcttgatgatcttccactctcgt
gaattcaattggaaggcaggagaagcagcaaagcacgacattaacaaccc
ccccactccccccacccccaccccacacccccacacccctgcactcccac
acccccaacccacaccctcccgtgatctggagcctgactcgcttgggaac
agcccatgaatcaaagaagttaaaataaatatcagaagccatggtagtgt
acatttttaatacaaacattcgggaggcagaggcaggaagatgtctgtga
gttcaaagccagtctggtctacagagtgggttttgggccagccaggacta
catagtaaggacttcaaagtaaaggtgtaatatgaaacagactgttggaa
aggcatcaccagaagccagctggttcaatgttctgaactgataaaaacaa
taaagattttaaatgttttaatattttatttttacatgtatgtctgcatg
tgcatacatatgtttataagtgcaccacatatatgtggtggccatgtatg
ccagaaacagcatgggacatccccttggaaatggagttataggtggttgt
gagcagactgatgtggaaatagtaagaatgacaggttaaggtttttaaaa
gctcaaactgacatttaggagaaatatatgcggtcccttccgctcgactc
gtgactcgagccccgggctaccttgccagcagagtcttgcccaacacccg
caagggtccacacaggactccccacgggaccctaagacctctggtgagtg
gatcacagtgcctgccccaatccaaatcgcgcggaacttgagactgcggt
acataggggaagcaggctacccgggcctgatctggggcacaagtctcttc
cgctcgactcgagactcgagccccgggctatcttgtcagcagagttcttg
ccaatcacccgcaagggttccacacgggactcccccacgggaccttagac
ctctggtgagtggaatccacagttgctctgccccattccaatcgcggcgg
aacttgagactgccggtacaatagggaagcaggctaaccgggcctggatc
tgggacacaagtttcctttcggctcgaactcaggactcgagtcctggctt
atcttgccagcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119626401_119627431
seq2: B6Ng01-201L16.g_134_1179 (reverse)

seq1  TCTGCTGGCAAGGTAGCCCGGGGCTCGAGTCTCGAG-TCGAGCGGAAGGG  49
      |||||||||||| ||  || || ||||||||  ||| |||||| ||| ||
seq2  TCTGCTGGCAAGATAAGCCAGGACTCGAGTCCTGAGTTCGAGCCGAAAGG  50

seq1  --ACTTGTGCCCCAGAT-CAGGCCCGGGTAGCCTGCTTCCCTA-TGTACC  95
        ||||||| ||||||| ||||||||| ||||||||||||||| ||||||
seq2  AAACTTGTGTCCCAGATCCAGGCCCGGTTAGCCTGCTTCCCTATTGTACC  100

seq1  -GCAGTCTCAAGTTCCG-CGCGATTGGATTGGGGCAG-GC-ACTGTG--A  139
       |||||||||||||||| |||||||||| |||||||| || ||||||   
seq2  GGCAGTCTCAAGTTCCGCCGCGATTGGAATGGGGCAGAGCAACTGTGGAT  150

seq1  TCCACTCACCAGAGGTCTTAGGGTCCCGT-GGGGAGTCCCGTGTGG-ACC  187
      ||||||||||||||||| || |||||||| |||||||||||||||| |||
seq2  TCCACTCACCAGAGGTC-TAAGGTCCCGTGGGGGAGTCCCGTGTGGAACC  199

seq1  CTTGCGGGTGTTGGGCAAG-ACTCTGCTGGCAAGGTAGCCCGGGGCTCGA  236
      |||||||||| | |||||| ||||||||| |||| |||||||||||||||
seq2  CTTGCGGGTGATTGGCAAGAACTCTGCTGACAAGATAGCCCGGGGCTCGA  249

seq1  GTCTCGAGTCGAGCGGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGC  286
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCTCGAGTCGAGCGGAAGAGACTTGTGCCCCAGATCAGGCCCGGGTAGC  299

seq1  CTGCTT-CCCTATGTACCGCAGTCTCAAGTTCCGCGCGA-TTGGATTGGG  334
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCTTCCCCTATGTACCGCAGTCTCAAGTTCCGCGCGATTTGGATTGGG  349

seq1  GCAGGCACTGTGATCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACTGTGATCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTC  399

seq1  CTGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCC  449

seq1  CGGGGCTCGAGTCACGAGTCGAGCGGAAGGGACCGCATATATTTCTCCTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTCGAGTCACGAGTCGAGCGGAAGGGACCGCATATATTTCTCCTA  499

seq1  AATGTCAGTTTGAGCTTTTAAAAACCTTAACCTGTCATTCTTACTATTTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTTTGAGCTTTTAAAAACCTTAACCTGTCATTCTTACTATTTC  549

seq1  CACATCAGTCTGCTCACAACCACCTATAACTCCATTTCCAAGGGGATGTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTCTGCTCACAACCACCTATAACTCCATTTCCAAGGGGATGTC  599

seq1  CCATGCTGTTTCTGGCATACATGGCCACCACATATATGTGGTGCACTTAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGTTTCTGGCATACATGGCCACCACATATATGTGGTGCACTTAT  649

seq1  AAACATATGTATGCACATGCAGACATACATGTAAAAATAAAATATTAAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGTATGCACATGCAGACATACATGTAAAAATAAAATATTAAAA  699

seq1  CATTTAAAATCTTTATTGTTTTTATCAGTTCAGAACATTGAACCAGCTGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATCTTTATTGTTTTTATCAGTTCAGAACATTGAACCAGCTGG  749

seq1  CTTCTGGTGATGCCTTTCCAACAGTCTGTTTCATATTACACCTTTACTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGATGCCTTTCCAACAGTCTGTTTCATATTACACCTTTACTTT  799

seq1  GAAGTCCTTACTATGTAGTCCTGGCTGGCCCAAAACCCACTCTGTAGACC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTTACTATGTAGTCCTGGCTGGCCCAAAACCCACTCTGTAGACC  849

seq1  AGACTGGCTTTGAACTCACAGACATCTTCCTGCCTCTGCCTCCCGAATGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTTTGAACTCACAGACATCTTCCTGCCTCTGCCTCCCGAATGT  899

seq1  TTGTATTAAAAATGTACACTACCATGGCTTCTGATATTTATTTTAACTTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAAAAATGTACACTACCATGGCTTCTGATATTTATTTTAACTTC  949

seq1  TTTGATTCATGGGCTGTTCCCAAGCGAGTCAGGCTCCAGATCACGGGAGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCATGGGCTGTTCCCAAGCGAGTCAGGCTCCAGATCACGGGAGG  999

seq1  GTGTGGGTTGGGGGTGTGGGAGTGCAGGGGTGTGGGGGTGTGGGGTG  1031
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTGGGGGTGTGGGAGTGCAGGGGTGTGGGGGTGTGGGGTG  1046