BAC Information

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BAC

Clone NameB6Ng01-201M19
Chromosome12 (Build37)
Map Location 50,174,430 - 50,175,540
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
Downstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201M19.bB6Ng01-201M19.g
ACCGA022470GA022471
length1,2061,115
definitionB6Ng01-201M19.b B6Ng01-201M19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcatcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtaaagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagctgtcgccgcctgagaagctctgtggctcttgtccagaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ttctgcgactctcgcccgtcccagaaatggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccgggcagacccccgtgc
tctcaccaggaaggtggccggctgtctggagctgaagatggcgccgccca
gaagctctgcgactcttgcccgtcctagaaacggctggcactctgtattc
cacacggtcacccgtgcagcctgccctccgcggagtcccggagccaagaa
gctcccgccggcacctgtgcacaaacctctcaggcctggcagacccccgt
gctctcaccaggaaggtggcgctgtctggagctgaagatggcgccgccca
gagctcttgcgactctcgccggtccagaaatgctgcacttctgtattcac
aaagtctaccgtgcagctgccctcgcgggagtcgaacaagaagcttccgc
ggacttgtgcaaactctcaagcaagcgaccctgtgctctcacaggtagtg
gacgattctgacgtaaggtggagtgtctgtgttgaataaatagtgaggca
tatact
ccagcgacatttcctagatccaagatcttccttatgagcagttttcaaat
catgatttttatctttttacatattttagcaaacttcatattttcaatta
agagaaagatgcatgcaattacactgcaatttagagttccctgaataatt
aattttgactgagacaaccaaggttttatttattttcgaacttgtcctta
ttgattacattctgatgaactttgggatttctgtaatgtatgcctttaag
aaacaaattcagtttgttctttcttctcttggtacagcttctttcacttt
tgaaagatggatctcttaataccaaactctttgattttggtttatagatt
tatttggcctccactgttttgaatataaatcagctatcaatcttactgtg
atttttcttatgaataatgaattgtttttctcatatagctttaaaaatat
tagcacaccctttggttttcaacacattaccatcaaagtgtgaacatgag
ttgttttgtgcaaatattattataattggaactgtcttcttgggggaaga
ttttagtcattgtctcttcagtattttttgtctttgcctcattccttttt
cttactcaaaataaacatatgtgaatagacataagtaatgatctggtctg
gtctgtgacaatcactattttctgatctcttaattattcattctttcttt
tccattatctgcatttcctaatctctaattactggccttcaacttttttt
ttttttgctccttttgttaattcaaatatacaactgaacaatacagtttt
gtcaaggataatgtggttttcagataccacattttcatttgattattttt
aatattcttggcctcctgttggtctctgttatcttagtgtgtattgtctt
tgtacttctcaagattaaatggggtgaggagaaattaccattttcaacac
acaataaattttcttctttataaaaacatgttcttgggcttggaagagga
ctcaaaggaacaaagcagtacttgagcaaacataagtacctaagaagcta
tattcaagaaatgaggtaaatcagcctatcatgccagcatcttatcctca
tgtacttacagagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50174430_50175540
seq2: B6Ng01-201M19.g_71_1185

seq1  CCAGCGACATTTCCTAGATCCAAGATCTTCCTTATGAGCAGTTTTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGACATTTCCTAGATCCAAGATCTTCCTTATGAGCAGTTTTCAAAT  50

seq1  CATGATTTTTATCTTTTTACATATTTTAGCAAACTTCATATTTTCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTTATCTTTTTACATATTTTAGCAAACTTCATATTTTCAATTA  100

seq1  AGAGAAAGATGCATGCAATTACACTGCAATTTAGAGTTCCCTGAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGATGCATGCAATTACACTGCAATTTAGAGTTCCCTGAATAATT  150

seq1  AATTTTGACTGAGACAACCAAGGTTTTATTTATTTTCGAACTTGTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGACTGAGACAACCAAGGTTTTATTTATTTTCGAACTTGTCCTTA  200

seq1  TTGATTACATTCTGATGAACTTTGGGATTTCTGTAATGTATGCCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTACATTCTGATGAACTTTGGGATTTCTGTAATGTATGCCTTTAAG  250

seq1  AAACAAATTCAGTTTGTTCTTTCTTCTCTTGGTACAGCTTCTTTCACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTCAGTTTGTTCTTTCTTCTCTTGGTACAGCTTCTTTCACTTT  300

seq1  TGAAAGATGGATCTCTTAATACCAAACTCTTTGATTTTGGTTTATAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATGGATCTCTTAATACCAAACTCTTTGATTTTGGTTTATAGATT  350

seq1  TATTTGGCCTCCACTGTTTTGAATATAAATCAGCTATCAATCTTACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCCTCCACTGTTTTGAATATAAATCAGCTATCAATCTTACTGTG  400

seq1  ATTTTTCTTATGAATAATGAATTGTTTTTCTCATATAGCTTTAAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTATGAATAATGAATTGTTTTTCTCATATAGCTTTAAAAATAT  450

seq1  TAGCACACCCTTTGGTTTTCAACACATTACCATCAAAGTGTGAACATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACCCTTTGGTTTTCAACACATTACCATCAAAGTGTGAACATGAG  500

seq1  TTGTTTTGTGCAAATATTATTATAATTGGAACTGTCTTCTTGGGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTGCAAATATTATTATAATTGGAACTGTCTTCTTGGGGGAAGA  550

seq1  TTTTAGTCATTGTCTCTTCAGTATTTTTTGTCTTTGCCTCATTCCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCATTGTCTCTTCAGTATTTTTTGTCTTTGCCTCATTCCTTTTT  600

seq1  CTTACTCAAAATAAACATATGTGAATAGACATAAGTAATGATCTGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAAAATAAACATATGTGAATAGACATAAGTAATGATCTGGTCTG  650

seq1  GTCTGTGACAATCACTATTTTCTGATCTCTTAATTATTCATTCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACAATCACTATTTTCTGATCTCTTAATTATTCATTCTTTCTTT  700

seq1  TCCATTATCTGCATTTCCTAATCTCTAATTACTGGCCTTCAACTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCTGCATTTCCTAATCTCTAATTACTGGCCTTCAACTTTTTTT  750

seq1  TTTTTTGCTCCTTTTGTTAATTCAAATATACAACTGAACAATACAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTCCTTTTGTTAATTCAAATATACAACTGAACAATACAGTTTT  800

seq1  GTCAAGGATAATGTGGTTTTCAGATACCACATTTTCATTTGATTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGATAATGTGGTTTTCAGATACCACATTTTCATTTGATTATTTTT  850

seq1  AATATTCTTGGCCTCCTGTTGGTCTCTGTTATCTTAGTGTGTATTGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTGGCCTCCTGTTGGTCTCTGTTATCTTAGTGTGTATTGTCTT  900

seq1  TGTACTTCTCAAGATTAAAT-GGGTGA-GAGAAATTACCATTTTCAACAC  948
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGTACTTCTCAAGATTAAATGGGGTGAGGAGAAATTACCATTTTCAACAC  950

seq1  AC-ATAAATTTTCTTCTTTAT-AAAACATGTTCTTGGGCTTGGAAGAGGA  996
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAATAAATTTTCTTCTTTATAAAAACATGTTCTTGGGCTTGGAAGAGGA  1000

seq1  CTCAAAGG-ACAAAGCAGTACTTGAGCAAACATAAGTACCTAAGAGCATA  1045
      |||||||| ||||||||||||||||||||||||||||||||||||   ||
seq2  CTCAAAGGAACAAAGCAGTACTTGAGCAAACATAAGTACCTAAGAAGCTA  1050

seq1  TA-TCAAGAAATGAGGTAAAATCAG-CTATCATGGCAAGCATCTTTATCC  1093
      || |||||||||||||| ||||||| ||||||| || |||||| ||||||
seq2  TATTCAAGAAATGAGGT-AAATCAGCCTATCAT-GCCAGCATC-TTATCC  1097

seq1  TCATGTACTTACAGAGCA  1111
      ||||||||||||||||||
seq2  TCATGTACTTACAGAGCA  1115