BAC Information

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BAC

Clone NameB6Ng01-201O08
Chromosome12 (Build37)
Map Location 7,064,937 - 7,168,716
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201O08.bB6Ng01-201O08.g
ACCGA022543GA022544
length1,0811,176
definitionB6Ng01-201O08.b B6Ng01-201O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,167,622 - 7,168,716)(7,064,937 - 7,066,109)
sequence
gaattcatttgaattttgaaagattaaactcaatatttaattttaagcat
tgcaaagaatgtcttatattagggtgattagcaagacatacatggtctgt
gcccaaattagttgatgttaccctgatgtgtgcatttggaagtagataaa
gttacagggatgctaagagagattgatttagggtatgttgttcagtatgc
atgaagagctttaaggtggaagatatgatgctaaatttattgatttttga
cagtccctggtgtacaggttttaatacagtgattttctagggcagcggtc
ttcatctttcctaatgctcctctctaatacacttcctcatgctgcggtaa
cccccagacataagatgagttttgtttgtacttcataactatcattttca
tactgttaagacttataatagaaatatcccatatgcagatggttttggta
acccctgtgaaaggatcattcgccctcctcgtgggtcacaacccacaggt
taagaaccactgttataggagattgttacacctagagagatacatctgcg
ggtaaagaagcagtgctcagaacttgtcagttcagtctttcagtgggtct
gatgtgaaatttaagcaactcccttcaatgcctatgggacccagtctcca
gagataaccagaatatctcaaggaagtgggtgtagagatagctttacaag
cttggtgcacattttttttttttctgagttgggatagtagaactcaaaga
tggagagatagatgaatcttttctttaggcttcatgggaatattttccct
ttgcaatttacactgggacggtacccagactactttctcccaaataaggt
tggtgcagagcctagaaacatagttttattttgttgtgttattttttgtt
ttgttttttctctcttgtcgggaacttgggaagagaagtattttgcactc
tgcttagtgtttttaatgttggaaagaaatatgccttctgtggattattt
tcaagctgaacagaacacacctcccaatgtacagaagcgcctattccata
tcatacctgatttgcattggagcaatacaat

gaattcatatgggtgaagccacatatttagggcaaagcataataaactaa
acaacaaatgtatgtggcatttccttttgaagcatcaaaacctgtttttt
ttttctaaatagattcatttttaggttgtaggttgccactgaatactcag
tttaagatggttgatattagtttacatgaatgacatgttatttttttatt
ggatattatatttaaatttcaattgttatccccttccctgattaccccct
cccagaaacaccctataccatctctccacctcttgcttctatgagagtct
atccccacccacctacccacacctgcctccctgtcctggcattcccctac
gctggggcatcaagccttcacaggaccaagagcctcttctcccattgatg
cccaacaaggccatcttctgctatatatatggctggagccatgggtccct
tcatgtgtactccttggttggttgcttattccctgggagctctgtggcgt
ctggttggttgatattgtttttcctatggggttgcaaaccccttcagctt
ctttagtcctttctctaactcctccattggggaccctgtgctcagtccaa
tggttggctgcaagcattcacctctgtatttgtcaggctctgatacattt
taaaaaaatagctcacaggcaacatcatgaagtaaattgtgcattctact
gtatcggtgacaatctgatacagtaagtatagtccaggagactggtgaaa
agtatgtcagcacaatttgtgattttggacagtattttactaattaggga
cacttgtgctaaatcagtagatgagaggaattatttacatgaagcaggaa
atagagataacagcattggatttctcttagaattggaccctttaaatatc
tgttcatctaggatatattacagaataacaccccctgcatcattgaagtt
gcccatataaaataaatcacaaattacccatgaagaaatgttttgaagtc
cagcaaagagctgctaatggttcacaagcagtgttggaatcttttctcaa
caattttagcttctggactagtgtttagacagaaaaaaataggagctatt
caaggttgattttgccaagctctttgaacctacccgtatggtttgactga
atgttcttctcattcaatgctgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7167622_7168716
seq2: B6Ng01-201O08.b_45_1125 (reverse)

seq1  ATTGTATTGCTCAAATGCAAATCTAGTATGAATATGGAATAGGCGCTTCT  50
      |||||||||||| ||||||||||  ||||| |||||||||||||||||||
seq2  ATTGTATTGCTCCAATGCAAATCAGGTATG-ATATGGAATAGGCGCTTCT  49

seq1  GTACATTGGGAGTGTGT-TTCTGTTCAGCTTTAAAATAAATCCACAAGAA  99
      |||||||||||| |||| ||||||||||||| ||||| ||||||| ||||
seq2  GTACATTGGGAG-GTGTGTTCTGTTCAGCTTGAAAAT-AATCCAC-AGAA  96

seq1  GGCATATTTCTTTCCAAACATTAAAAAACAACTAAGCAGAGTTGCAAAAT  149
      ||||||||||||||| |||||||||||   ||||||||||| ||||||||
seq2  GGCATATTTCTTTCC-AACATTAAAAA--CACTAAGCAGAG-TGCAAAAT  142

seq1  ACCTTCTCTTCCCAAGTTTCCAGAACAAGAAGAGAAAAAAACAAAAACAA  199
      | |||||||||||||||| ||   ||||| ||||||||||   |||||||
seq2  A-CTTCTCTTCCCAAGTTCCC--GACAAG-AGAGAAAAAA--CAAAACAA  186

seq1  AAAATAACAACAACAAAAATAAAACTATGTTTCTAGGCTCTGCACCAACC  249
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AAAATAAC-ACAAC-AAAATAAAACTATGTTTCTAGGCTCTGCACCAACC  234

seq1  TTATTTGGGAGAAAGTAGTCTGGGTACCGTCCCAGTGTAAATTGCAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGGAGAAAGTAGTCTGGGTACCGTCCCAGTGTAAATTGCAAAGG  284

seq1  GAAAATATTCCCATGAAGCCTAAAGAAAAGATTCATCTATCTCTCCATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTCCCATGAAGCCTAAAGAAAAGATTCATCTATCTCTCCATCT  334

seq1  TTGAGTTCTACTATCCCAACTCAG-AAAAAAAAAAATGTGCACCAAGCTT  398
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAGTTCTACTATCCCAACTCAGAAAAAAAAAAAATGTGCACCAAGCTT  384

seq1  GTAAAGCTATCTCTACACCCACTTCCTTGAGATATTCTGGTTATCTCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTATCTCTACACCCACTTCCTTGAGATATTCTGGTTATCTCTGG  434

seq1  AGACTGGGTCCCATAGGCATTGAAGGGAGTTGCTTAAATTTCACATCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTCCCATAGGCATTGAAGGGAGTTGCTTAAATTTCACATCAGA  484

seq1  CCCACTGAAAGACTGAACTGACAAGTTCTGAGCACTGCTTCTTTACCCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAAAGACTGAACTGACAAGTTCTGAGCACTGCTTCTTTACCCGC  534

seq1  AGATGTATCTCTCTAGGTGTAACAATCTCCTATAACAGTGGTTCTTAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATCTCTCTAGGTGTAACAATCTCCTATAACAGTGGTTCTTAACC  584

seq1  TGTGGGTTGTGACCCACGAGGAGGGCGAATGATCCTTTCACAGGGGTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGTGACCCACGAGGAGGGCGAATGATCCTTTCACAGGGGTTAC  634

seq1  CAAAACCATCTGCATATGGGATATTTCTATTATAAGTCTTAACAGTATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATCTGCATATGGGATATTTCTATTATAAGTCTTAACAGTATGA  684

seq1  AAATGATAGTTATGAAGTACAAACAAAACTCATCTTATGTCTGGGGGTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGTTATGAAGTACAAACAAAACTCATCTTATGTCTGGGGGTTA  734

seq1  CCGCAGCATGAGGAAGTGTATTAGAGAGGAGCATTAGGAAAGATGAAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCATGAGGAAGTGTATTAGAGAGGAGCATTAGGAAAGATGAAGAC  784

seq1  CGCTGCCCTAGAAAATCACTGTATTAAAACCTGTACACCAGGGACTGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCCTAGAAAATCACTGTATTAAAACCTGTACACCAGGGACTGTCA  834

seq1  AAAATCAATAAATTTAGCATCATATCTTCCACCTTAAAGCTCTTCATGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATAAATTTAGCATCATATCTTCCACCTTAAAGCTCTTCATGCA  884

seq1  TACTGAACAACATACCCTAAATCAATCTCTCTTAGCATCCCTGTAACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACAACATACCCTAAATCAATCTCTCTTAGCATCCCTGTAACTTT  934

seq1  ATCTACTTCCAAATGCACACATCAGGGTAACATCAACTAATTTGGGCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCCAAATGCACACATCAGGGTAACATCAACTAATTTGGGCACA  984

seq1  GACCATGTATGTCTTGCTAATCACCCTAATATAAGACATTCTTTGCAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGTATGTCTTGCTAATCACCCTAATATAAGACATTCTTTGCAATG  1034

seq1  CTTAAAATTAAATATTGAGTTTAATCTTTCAAAATTCAAATGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTAAATATTGAGTTTAATCTTTCAAAATTCAAATGAATTC  1081


seq1: chr12_7064937_7066109
seq2: B6Ng01-201O08.g_64_1239

seq1  GAATTCATATGGGTGAAGCCACATATTTAGGGCAAAGCATAATAAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGGTGAAGCCACATATTTAGGGCAAAGCATAATAAACTAA  50

seq1  ACAACAAATGTATGTGGCATTTCCTTTTGAAGCATCAAAACCTGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAATGTATGTGGCATTTCCTTTTGAAGCATCAAAACCTGTTTTTT  100

seq1  TTTTCTAAATAGATTCATTTTTAGGTTGTAGGTTGCCACTGAATACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAATAGATTCATTTTTAGGTTGTAGGTTGCCACTGAATACTCAG  150

seq1  TTTAAGATGGTTGATATTAGTTTACATGAATGACATGTTATTTTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGGTTGATATTAGTTTACATGAATGACATGTTATTTTTTTATT  200

seq1  GGATATTATATTTAAATTTCAATTGTTATCCCCTTCCCTGATTACCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTATATTTAAATTTCAATTGTTATCCCCTTCCCTGATTACCCCCT  250

seq1  CCCAGAAACACCCTATACCATCTCTCCACCTCTTGCTTCTATGAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACACCCTATACCATCTCTCCACCTCTTGCTTCTATGAGAGTCT  300

seq1  ATCCCCACCCACCTACCCACACCTGCCTCCCTGTCCTGGCATTCCCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACCCACCTACCCACACCTGCCTCCCTGTCCTGGCATTCCCCTAC  350

seq1  GCTGGGGCATCAAGCCTTCACAGGACCAAGAGCCTCTTCTCCCATTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCATCAAGCCTTCACAGGACCAAGAGCCTCTTCTCCCATTGATG  400

seq1  CCCAACAAGGCCATCTTCTGCTATATATATGGCTGGAGCCATGGGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAGGCCATCTTCTGCTATATATATGGCTGGAGCCATGGGTCCCT  450

seq1  TCATGTGTACTCCTTGGTTGGTTGCTTATTCCCTGGGAGCTCTGTGGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTACTCCTTGGTTGGTTGCTTATTCCCTGGGAGCTCTGTGGCGT  500

seq1  CTGGTTGGTTGATATTGTTTTTCCTATGGGGTTGCAAACCCCTTCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTTGATATTGTTTTTCCTATGGGGTTGCAAACCCCTTCAGCTT  550

seq1  CTTTAGTCCTTTCTCTAACTCCTCCATTGGGGACCCTGTGCTCAGTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCTTTCTCTAACTCCTCCATTGGGGACCCTGTGCTCAGTCCAA  600

seq1  TGGTTGGCTGCAAGCATTCACCTCTGTATTTGTCAGGCTCTGATACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCTGCAAGCATTCACCTCTGTATTTGTCAGGCTCTGATACATTT  650

seq1  TAAAAAAATAGCTCACAGGCAACATCATGAAGTAAATTGTGCATTCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAGCTCACAGGCAACATCATGAAGTAAATTGTGCATTCTACT  700

seq1  GTATCGGTGACAATCTGATACAGTAAGTATAGTCCAGGAGACTGGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGTGACAATCTGATACAGTAAGTATAGTCCAGGAGACTGGTGAAA  750

seq1  AGTATGTCAGCACAATTTGTGATTTTGGACAGTATTTTACTAATTAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCAGCACAATTTGTGATTTTGGACAGTATTTTACTAATTAGGGA  800

seq1  CACTTGTGCTAAATCAGTAGATGAGAGGAATTATTTACATGAAGCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGCTAAATCAGTAGATGAGAGGAATTATTTACATGAAGCAGGAA  850

seq1  ATAGAGATAACAGCATTGGATTTCTCTTAGAATTGGACCC-TTAAATATC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAGAGATAACAGCATTGGATTTCTCTTAGAATTGGACCCTTTAAATATC  900

seq1  TGTTCATCTAGGATATATTACAGAATAACAACCCCCTGCATCATTGAAGT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTCATCTAGGATATATTACAGAATAAC-ACCCCCTGCATCATTGAAGT  949

seq1  TGCCCATATAAAATAAATCACAAATTACCCATGAGAAAAATG-TCTGAAG  998
      |||||||||||||||||||||||||||||||||| | ||||| | |||||
seq2  TGCCCATATAAAATAAATCACAAATTACCCATGA-AGAAATGTTTTGAAG  998

seq1  TCCAGCAAAGAGCTGCTAAATGGTTCACAAGCAAGTGTTGG-ATC-TTTC  1046
      ||||||||||||||||| |||||||||||||| |||||||| ||| ||||
seq2  TCCAGCAAAGAGCTGCT-AATGGTTCACAAGC-AGTGTTGGAATCTTTTC  1046

seq1  TCAACAATTTTAGC-TCTGGACTAGTG-TTAGACAGAGAGAAATAGGAGC  1094
      |||||||||||||| |||||||||||| ||||||||| | ||||||||||
seq2  TCAACAATTTTAGCTTCTGGACTAGTGTTTAGACAGAAAAAAATAGGAGC  1096

seq1  TATTCAA-GTTGATTTTGCCAAGCTCTT--GACCTACCCTTATTGGTTGA  1141
      ||||||| ||||||||||||||||||||   |||||||| ||| | ||||
seq2  TATTCAAGGTTGATTTTGCCAAGCTCTTTGAACCTACCCGTATGGTTTGA  1146

seq1  CTG-ATG-TCTTCTTCAATCCCAAATGCTGAGCA  1173
      ||| ||| ||||| ||| ||   |||||||||||
seq2  CTGAATGTTCTTC-TCATTC---AATGCTGAGCA  1176


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