BAC Information

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BAC

Clone NameB6Ng01-202J01
Chromosome12 (Build37)
Map Location 56,680,389 - 56,861,614
singlet/doubletdoublet
Overlap geneInsm2, Garnl1
Upstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202J01.bB6Ng01-202J01.g
ACCGA023024GA023025
length198735
definitionB6Ng01-202J01.b B6Ng01-202J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,680,389 - 56,680,586)(56,860,884 - 56,861,614)
sequence
gaattcatttgggtgtgttttgtttagtgttttgtatatattctatgtat
tacttcagaggtgacaataaaaaaaatgtaatgaggtggctgctaaccag
tcagaaatgaggcaggaccacagaactaaaccccagtcctgagagcctgc
catggtggactttcgggttgagttggaaggtgatgggaaggtgggagg
gaattcttccctagactcttacattaaagctaactacagaaatcaaactt
tcctgacatgataaaatgtgttgctggtggtaagaatgcctggaatttat
tcccagagaagaaagataagggtacagaggcagcactgggtgactgaccc
atctgctttattcttcgatctgagcgagttttcatcctttcattgttcaa
cccctgtcatatgtcagactccacaggaactagaaactgagatgtgatta
ggagtataaaagactgtctgtatttatctgatttgattttctactgtaca
atgtcctttgaaccaggagagggatatttgggtagtatttgtttatttta
attgttaatttatgtccttgtaacgtttcgccagcaaaacacacttggac
aaccagatccttctacggcaaagctttattgcttacttcttaggaagacc
ccgaacccggaaaaaggagctgcttaaatacccctccgtgtgacatgtca
gctcctgattagctgctcactcatcaccccactgctacgccccgagatgg
gcagtgactttggcacgaatttactctagcacctgagcacattgcttgtt
ttactagttaggcactgtggaagccagcgccatcttgtaatggcgattgt
tcacggctctccacaattttaacctcatcaagaggagctcaatccatgat
agacacatatactgttcctgtgttacactcaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56680389_56680586
seq2: B6Ng01-202J01.b_43_240

seq1  GAATTCATTTGGGTGTGTTTTGTTTAGTGTTTTGTATATATTCTATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGGTGTGTTTTGTTTAGTGTTTTGTATATATTCTATGTAT  50

seq1  TACTTCAGAGGTGACAATAAAAAAAATGTAATGAGGTGGCTGCTAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGAGGTGACAATAAAAAAAATGTAATGAGGTGGCTGCTAACCAG  100

seq1  TCAGAAATGAGGCAGGACCACAGAACTAAACCCCAGTCCTGAGAGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGAGGCAGGACCACAGAACTAAACCCCAGTCCTGAGAGCCTGC  150

seq1  CATGGTGGACTTTCGGGTTGAGTTGGAAGGTGATGGGAAGGTGGGAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGACTTTCGGGTTGAGTTGGAAGGTGATGGGAAGGTGGGAGG  198

seq1: chr12_56860884_56861614
seq2: B6Ng01-202J01.g_67_801 (reverse)

seq1  AAGGTGAGTGT-ACACAGGAACAGTATATGTGTCTATCCT-GATTGAGCT  48
      | ||||||||| |||||||||||||||||||||||||| | |||||||||
seq2  ATGGTGAGTGTAACACAGGAACAGTATATGTGTCTATCATGGATTGAGCT  50

seq1  CCTCTTGATGAGGTTAAATTTGTGGAGAGCCGTGAACAATCGCCATTACA  98
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCTTGATGAGGTTAAAATTGTGGAGAGCCGTGAACAATCGCCATTACA  100

seq1  AGATGGCGCTGGCTTCCACAGTGCCTAACTAGT-AAACAAGCAATGTGCT  147
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATGGCGCTGGCTTCCACAGTGCCTAACTAGTAAAACAAGCAATGTGCT  150

seq1  CAGGTGCTAGAGTAAATTCGTGCC-AAGTCACTGCCCATCTCGGGGCGTA  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGGTGCTAGAGTAAATTCGTGCCAAAGTCACTGCCCATCTCGGGGCGTA  200

seq1  GCAGTGGGGTGATGAGTGAGCAGCTAATCAGGAGCTGACATGTCACACGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGTGATGAGTGAGCAGCTAATCAGGAGCTGACATGTCACACGG  250

seq1  AGGGGTATTTAAGCAGCTCCTTTTTCCGGGTTCGGGGTCTTCCTAAGAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTATTTAAGCAGCTCCTTTTTCCGGGTTCGGGGTCTTCCTAAGAAG  300

seq1  TAAGCAATAAAGCTTTGCCGTAGAAGGATCTGGTTGTCCAAGTGTGTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATAAAGCTTTGCCGTAGAAGGATCTGGTTGTCCAAGTGTGTTTT  350

seq1  GCTGGCGAAACGTTACAAGGACATAAATTAACAATTAAAATAAACAAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGAAACGTTACAAGGACATAAATTAACAATTAAAATAAACAAATA  400

seq1  CTACCCAAATATCCCTCTCCTGGTTCAAAGGACATTGTACAGTAGAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAATATCCCTCTCCTGGTTCAAAGGACATTGTACAGTAGAAAAT  450

seq1  CAAATCAGATAAATACAGACAGTCTTTTATACTCCTAATCACATCTCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGATAAATACAGACAGTCTTTTATACTCCTAATCACATCTCAGT  500

seq1  TTCTAGTTCCTGTGGAGTCTGACATATGACAGGGGTTGAACAATGAAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCCTGTGGAGTCTGACATATGACAGGGGTTGAACAATGAAAGG  550

seq1  ATGAAAACTCGCTCAGATCGAAGAATAAAGCAGATGGGTCAGTCACCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTCGCTCAGATCGAAGAATAAAGCAGATGGGTCAGTCACCCAG  600

seq1  TGCTGCCTCTGTACCCTTATCTTTCTTCTCTGGGAATAAATTCCAGGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTCTGTACCCTTATCTTTCTTCTCTGGGAATAAATTCCAGGCAT  650

seq1  TCTTACCACCAGCAACACATTTTATCATGTCAGGAAAGTTTGATTTCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCACCAGCAACACATTTTATCATGTCAGGAAAGTTTGATTTCTGT  700

seq1  AGTTAGCTTTAATGTAAGAGTCTAGGGAAGAATTC  731
      |||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTTTAATGTAAGAGTCTAGGGAAGAATTC  735