BAC Information

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BAC

Clone NameB6Ng01-202L24
Chromosome12 (Build37)
Map Location 112,520,233 - 112,731,623
singlet/doubletdoublet
Overlap geneCdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266
Upstream geneEG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn
Downstream geneEif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202L24.bB6Ng01-202L24.g
ACCGA023162GA023163
length1,180911
definitionB6Ng01-202L24.b B6Ng01-202L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,730,470 - 112,731,623)(112,520,233 - 112,521,140)
sequence
gaattcactggggttaggttcctagaagctatgtactgacttcaaatgtt
ggaggccataagatagcattagaatacaagcagcattaggccagcctact
acacctttgtcttttgatgctgctagcattgcaaatgatattttgaaaaa
gttacaaactgttttcccttcatgttccttgttacgtctctcttattggc
catagcatgacttggcttttttatggcatgtctattatctgttcttttga
gagaaatcatcagagcttttatagatgtcaaagcagagttacataaattc
aggctccagtgtcttccctagtagaagttggtagataatgaccggtaaga
ttgtcttgaaaaaccttctcaacctaagacaggccacgaatacaagatta
ttcatgtgccaatgattgttaagagctgagttttcagatggcaataggca
caactttctgctttgtgactgataaggtgtgctgttcttatagataaaaa
agaccagtaagattttctcagagttggatcaacctaagacagggcatgaa
acctagaattcatataccgatgataggtaaggtccacacttcttgagggg
atgcctaaaacaggcataatctttctgtgccaataactgagacagctttg
gcttgtatagataaatcggggggggcatgtgggggccacatccagagtta
actttggatgacttcttgcttgtgattaatcatgaatgagtctgctgaca
tctgtctttgcttttagttaagacgtgtgttataccctgccaagttcctc
cacttatgtatacatccttgagagactgttctagcccgaaggaaatgggc
tttagtgaaacatagatgctgtgtaccataaacttcaacacataagcatt
tgtgggcattgttttatattcctgaaattggtcatattttctgtttgctt
gtctttaaaagacacttgagaaaaatacactttgcatttggttcgattat
tgaccagcagtccctcccatatcctgtctcttgcattcttctttctttcc
ttttctataatccatcttcactccctgttcttaattaagggttttactgc
tgttgacaaacaccaatggaccaaagctactcttaaagaagggaacaaac
attttaaattgggggtccgccttacatgtt
gaattcatcttgaaagttgtcagaaatcgtaccgagaatatttgtgaagg
ttccagaacctgatagcaaacttctcagaacggcagtaacaggctgctta
gaaacgctatagtaggaggtttgaagtttgtcattgacaagggaatggtt
tgatggcggttttagtgagtgagcctgaggatggttgggcccaaatataa
agacagcatctagtgaccgagtctctcggaaagtggcctggcttcagatc
tcacggctcacagtagatgtatcaggtaatatccacagaggttttccaaa
gaacagtggttggcctggaagagccgcagggaggccagagctcacaggcc
tattcaaaagctttaagcaaagggaaggttttaaaagcagcatttaaaaa
agaaaatccctggctggaagacttcacagggataggagctgacgttggtt
ggtggctgggcaaacattgttgcagaagtggactggagtggccttggcgg
aaggctgtgttctgaagttcttgatgttaccaggcacactgtacacgcgt
gggctctcctcctccataactctttttttcttttttaaagatttgtttat
ttattttatgtatacgagtactctgtagctgtgctgatggttgtgagcca
tcgtggctgatccagtctgccctactcactccggccctgctggctctgtg
gcttaaagatttatttattatacataagtacactgtagttgttttaagac
acaccataagagggcgtcagatcccattacagatggttgtgagccacccg
tgtggttgctgggatttgaaccccaggaccttcagaagagcagtcagtgc
tcttaactactgagccatctttccagccctactctataattcttattctt
ggtttttatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112730470_112731623
seq2: B6Ng01-202L24.b_50_1229 (reverse)

seq1  AACATGTAAGCCGG--CCCCAATT--AAATG-TTGT--CCTTC--TAAGA  41
      |||||||||| |||  ||||||||  ||||| ||||  |||||  |||||
seq2  AACATGTAAGGCGGACCCCCAATTTAAAATGTTTGTTCCCTTCTTTAAGA  50

seq1  GTTGCTTTGGTC--ATGGTGTCTGTTCACAGCAGTAAAACCC-TAACTAA  88
      || |||||||||   |||||| |||  ||||||||||||||| ||| |||
seq2  GTAGCTTTGGTCCATTGGTGTTTGTCAACAGCAGTAAAACCCTTAATTAA  100

seq1  G-ACAGGGAGTGAAGAT-GATTATAGAAAAGG-AAGAAAGAAG-ATGCAA  134
      | ||||||||||||||| |||||||||||||| |||||||||| ||||||
seq2  GAACAGGGAGTGAAGATGGATTATAGAAAAGGAAAGAAAGAAGAATGCAA  150

seq1  GAGACA-GATATGGGA-GGACTGCTGGTCAAT-ATCGAACCAAATGC-AA  180
      |||||| ||||||||| ||||||||||||||| |||||||||||||| ||
seq2  GAGACAGGATATGGGAGGGACTGCTGGTCAATAATCGAACCAAATGCAAA  200

seq1  GTGTA-TTTTCTC-AGTGTCTTTTAAAGACAAGC-AACAGAAAATATGAC  227
      ||||| ||||||| |||||||||||||||||||| |||||||||||||||
seq2  GTGTATTTTTCTCAAGTGTCTTTTAAAGACAAGCAAACAGAAAATATGAC  250

seq1  CAATTTCAGGAATAT-AAACAATGCCCACAAATGCTTATGTGTTG-AGTT  275
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CAATTTCAGGAATATAAAACAATGCCCACAAATGCTTATGTGTTGAAGTT  300

seq1  TATGGTACACAGCATCTATGTTTCACT-AAGGCCATTTCCTTCGGGCTAG  324
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  TATGGTACACAGCATCTATGTTTCACTAAAGCCCATTTCCTTCGGGCTAG  350

seq1  AACAGTCTCTCAAGGATGTATACATAAGTGGAGGAACTTGGCAGGGTATA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCTCAAGGATGTATACATAAGTGGAGGAACTTGGCAGGGTATA  400

seq1  ACACACGTCTTAACTAAAAGCAAAGACAGATGTCAGCAGACTCATTCATG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGTCTTAACTAAAAGCAAAGACAGATGTCAGCAGACTCATTCATG  450

seq1  ATTAATCACAAGCAAGAAGTCATCCAAAGTTAACTCTGGATGTGGCCCCC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCACAAGCAAGAAGTCATCCAAAGTTAACTCTGGATGTGGCCCCC  500

seq1  ACATGCCCCCCCCGATTTATCTATACAAGCCAAAGCTGTCTCAGTTATTG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCCCCCCGATTTATCTATACAAGCCAAAGCTGTCTCAGTTATTG  550

seq1  GCACAGAAAGATTATGCCTGTTTTAGGCATCCCCTCAAGAAGTGTGGACC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAAGATTATGCCTGTTTTAGGCATCCCCTCAAGAAGTGTGGACC  600

seq1  TTACCTATCATCGGTATATGAATTCTAGGTTTCATGCCCTGTCTTAGGTT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCATCGGTATATGAATTCTAGGTTTCATGCCCTGTCTTAGGTT  650

seq1  GATCCAACTCTGAGAAAATCTTACTGGTCTTTTTTATCTATAAGAACAGC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAACTCTGAGAAAATCTTACTGGTCTTTTTTATCTATAAGAACAGC  700

seq1  ACACCTTATCAGTCACAAAGCAGAAAGTTGTGCCTATTGCCATCTGAAAA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTATCAGTCACAAAGCAGAAAGTTGTGCCTATTGCCATCTGAAAA  750

seq1  CTCAGCTCTTAACAATCATTGGCACATGAATAATCTTGTATTCGTGGCCT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTTAACAATCATTGGCACATGAATAATCTTGTATTCGTGGCCT  800

seq1  GTCTTAGGTTGAGAAGGTTTTTCAAGACAATCTTACCGGTCATTATCTAC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGTTGAGAAGGTTTTTCAAGACAATCTTACCGGTCATTATCTAC  850

seq1  CAACTTCTACTAGGGAAGACACTGGAGCCTGAATTTATGTAACTCTGCTT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTACTAGGGAAGACACTGGAGCCTGAATTTATGTAACTCTGCTT  900

seq1  TGACATCTATAAAAGCTCTGATGATTTCTCTCAAAAGAACAGATAATAGA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTATAAAAGCTCTGATGATTTCTCTCAAAAGAACAGATAATAGA  950

seq1  CATGCCATAAAAAAGCCAAGTCATGCTATGGCCAATAAGAGAGACGTAAC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATAAAAAAGCCAAGTCATGCTATGGCCAATAAGAGAGACGTAAC  1000

seq1  AAGGAACATGAAGGGAAAACAGTTTGTAACTTTTTCAAAATATCATTTGC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATGAAGGGAAAACAGTTTGTAACTTTTTCAAAATATCATTTGC  1050

seq1  AATGCTAGCAGCATCAAAAGACAAAGGTGTAGTAGGCTGGCCTAATGCTG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGCAGCATCAAAAGACAAAGGTGTAGTAGGCTGGCCTAATGCTG  1100

seq1  CTTGTATTCTAATGCTATCTTATGGCCTCCAACATTTGAAGTCAGTACAT  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCTAATGCTATCTTATGGCCTCCAACATTTGAAGTCAGTACAT  1150

seq1  AGCTTCTAGGAACCTAACCCCAGTGAATTC  1154
      ||||||||||||||||||||||||||||||
seq2  AGCTTCTAGGAACCTAACCCCAGTGAATTC  1180

seq1: chr12_112520233_112521140
seq2: B6Ng01-202L24.g_65_975

seq1  GAATTCATCTTGAAAGTTGTCAGAAATCGTACCGAGAATATTTGTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGAAAGTTGTCAGAAATCGTACCGAGAATATTTGTGAAGG  50

seq1  TTCCAGAACCTGATAGCAAACTTCTCAGAACGGCAGTAACAGGCTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAACCTGATAGCAAACTTCTCAGAACGGCAGTAACAGGCTGCTTA  100

seq1  GAAACGCTATAGTAGGAGGTTTGAAGTTTGTCATTGACAAGGGAATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCTATAGTAGGAGGTTTGAAGTTTGTCATTGACAAGGGAATGGTT  150

seq1  TGATGGCGGTTTTAGTGAGTGAGCCTGAGGATGGTTGGGCCCAAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCGGTTTTAGTGAGTGAGCCTGAGGATGGTTGGGCCCAAATATAA  200

seq1  AGACAGCATCTAGTGACCGAGTCTCTCGGAAAGTGGCCTGGCTTCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATCTAGTGACCGAGTCTCTCGGAAAGTGGCCTGGCTTCAGATC  250

seq1  TCACGGCTCACAGTAGATGTATCAGGTAATATCCACAGAGGTTTTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGCTCACAGTAGATGTATCAGGTAATATCCACAGAGGTTTTCCAAA  300

seq1  GAACAGTGGTTGGCCTGGAAGAGCCGCAGGGAGGCCAGAGCTCACAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGGTTGGCCTGGAAGAGCCGCAGGGAGGCCAGAGCTCACAGGCC  350

seq1  TATTCAAAAGCTTTAAGCAAAGGGAAGGTTTTAAAAGCAGCATTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAGCTTTAAGCAAAGGGAAGGTTTTAAAAGCAGCATTTAAAAA  400

seq1  AGAAAATCCCTGGCTGGAAGACTTCACAGGGATAGGAGCTGACGTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCCTGGCTGGAAGACTTCACAGGGATAGGAGCTGACGTTGGTT  450

seq1  GGTGGCTGGGCAAACATTGTTGCAGAAGTGGACTGGAGTGGCCTTGGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGGCAAACATTGTTGCAGAAGTGGACTGGAGTGGCCTTGGCGG  500

seq1  AAGGCTGTGTTCTGAAGTTCTTGATGTTACCAGGCACACTGTACACGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTGTTCTGAAGTTCTTGATGTTACCAGGCACACTGTACACGCGT  550

seq1  GGGCTCTCCTCCTCCATAACTCTTTTTTTCTTTTTTAAAGATTTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCCTCCTCCATAACTCTTTTTTTCTTTTTTAAAGATTTGTTTAT  600

seq1  TTATTTTATGTATACGAGTACTCTGTAGCTGTGCTGATGGTTGTGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTATACGAGTACTCTGTAGCTGTGCTGATGGTTGTGAGCCA  650

seq1  TCGTGGCTGATCCAGTCTGCCCTACTCACTCCGGCCCTGCTGGCTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCTGATCCAGTCTGCCCTACTCACTCCGGCCCTGCTGGCTCTGTG  700

seq1  GCTTAAAGATTTATTTATTATACATAAGTACACTGTAGTTGTTTTAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGATTTATTTATTATACATAAGTACACTGTAGTTGTTTTAAGAC  750

seq1  ACACCATAAGAGGGCGTCAGATCCCATTACAGATGGTTGTGAGCCA-CCG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACCATAAGAGGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCCG  800

seq1  TGTGGTTGCTGGGATTTGAA-CCCAGGACCTTCAGAAGAGCAGTCAGTGC  848
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACCCCAGGACCTTCAGAAGAGCAGTCAGTGC  850

seq1  TCTTAACTACTGAGCCATCTTTCCAGCCCTACTCTATAATTCTTATTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTACTGAGCCATCTTTCCAGCCCTACTCTATAATTCTTATTCTT  900

seq1  -GTTTTTATGG  908
       ||||||||||
seq2  GGTTTTTATGG  911