BAC Information

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BAC

Clone NameB6Ng01-202P24
Chromosome12 (Build37)
Map Location 27,139,829 - 27,290,168
singlet/doubletdoublet
Overlap geneRsad2, Tyki, LOC668731, 1700020D12Rik
Upstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202P24.bB6Ng01-202P24.g
ACCGA023335GA023336
length1,077159
definitionB6Ng01-202P24.b B6Ng01-202P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,289,099 - 27,290,168)(27,139,829 - 27,139,987)
sequence
gaattcaaggccacctgggtccatagaatgagttccaggtcagctgagac
tacccagtgagactctgtctcaaagaaataattttaaacacacacacaca
cacacacacacacacacacattcagccatcaccaccaccaccaacaacaa
caataaaaaaaaaacccacaaccccctaaaaagagcttgaaggtttgccc
ctagtcttttaatggcagtcaaacattggcagaaatcaaatgtgtattca
agttgctactcacttattagatcaatccttctacaaatacatatttgttg
aattcgtgcatacaaaggctgcatgaaaacaggggtggtgctatttctga
tgagaagaaaaatgagttagcaggcaataaaagtcaaaaacattattgca
gtgatcagagaataaaagcagagagcaaagcaaatccctgcaggaaaggc
tgcagcagggacttcccatgcctggggctttcacatggttacctattacc
taaaaggtcccaccagctccccacatgtttgaaggaggtgtaagttcaaa
gatgtcaggatataaataggttcctggtaacttgtgctgggtaaggtctt
tctcctgtgaaccccacagggatccaagaaatgtctaattgaataagcat
ctttaatgtataaggaatggaaattgggagaaagtagatactgaatgaac
aaccaggctcccttattgaaagagatctcctattctaacttggagagtct
aggtgcacaatttcatagacagcgcagtaatggagacggaaagagggtga
gcatgcaaaaagcatagaggagatgctggactgagaagtcaaagaaagtt
gtatgttaagaggaaatttgtgaataaattgtgataaaacctgactctct
tcagtagaagaggagaggtgagcactttggagcaggtcagctgatcccca
taatttcctgtagggtctagttgaatactgacagactacaccatcatgaa
tctacttgtattccctggcaagggagtgtctccacttctcactctttttc
tgctctcatgctaagaacatcaccagt

ttggctgagtgagtcagctggaagtgcagctagcatgcttgccgcctaga
cacatctgctgtgcttcagttaaagggtagccagaaagataaggtagtct
ctaggtgagcaggtgttctggaaagagtagaagggcggaagggagggaag
gaggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27289099_27290168
seq2: B6Ng01-202P24.b_51_1127 (reverse)

seq1  ACTGTTGATGT--CTAGCATGAGA-CAG-AAAAGAGTGAGAAGTGAAGAC  46
      |||| ||||||   |||||||||| ||| |||||||||||||||| ||||
seq2  ACTGGTGATGTTCTTAGCATGAGAGCAGAAAAAGAGTGAGAAGTGGAGAC  50

seq1  ACTCCC-TGCCAGGGAATACAAGTAGA-TCATGATGTTGTAGTCTGTCAG  94
      |||||| |||||||||||||||||||| |||||||| |||||||||||||
seq2  ACTCCCTTGCCAGGGAATACAAGTAGATTCATGATGGTGTAGTCTGTCAG  100

seq1  TGATCAACTAGA-CCTACAGGAAA-TATGGGGATCAGCTGACCTGCTCCA  142
      |  ||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  TATTCAACTAGACCCTACAGGAAATTATGGGGATCAGCTGACCTGCTCCA  150

seq1  AAGTGCTCACCTCTCCTCTTCTACTGAAGAGAGTCAGGTTTTATCACAAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGTGCTCACCTCTCCTCTTCTACTGAAGAGAGTCAGGTTTTATCAC-AA  199

seq1  TTTATTCACAAATTTCCTCTTAACATACAACTTTCTTTGACTTCTCAGTC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCACAAATTTCCTCTTAACATACAACTTTCTTTGACTTCTCAGTC  249

seq1  CAGCATCTCCTCTATGCTTTTTGCATGCTCACCCTCTTTCCGTCTCCATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCTCTATGCTTTTTGCATGCTCACCCTCTTTCCGTCTCCATT  299

seq1  ACTGCGCTGTCTATGAAATTGTGCACCTAGACTCTCCAAGTTAGAATAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCTGTCTATGAAATTGTGCACCTAGACTCTCCAAGTTAGAATAGG  349

seq1  AGATCTCTTTCAATAAGGGAGCCTGGTTGTTCATTCAGTATCTACTTTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTTTCAATAAGGGAGCCTGGTTGTTCATTCAGTATCTACTTTCT  399

seq1  CCCAATTTCCATTCCTTATACATTAAAGATGCTTATTCAATTAGACATTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTCCATTCCTTATACATTAAAGATGCTTATTCAATTAGACATTT  449

seq1  CTTGGATCCCTGTGGGGTTCACAGGAGAAAGACCTTACCCAGCACAAGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATCCCTGTGGGGTTCACAGGAGAAAGACCTTACCCAGCACAAGTT  499

seq1  ACCAGGAACCTATTTATATCCTGACATCTTTGAACTTACACCTCCTTCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAACCTATTTATATCCTGACATCTTTGAACTTACACCTCCTTCAA  549

seq1  ACATGTGGGGAGCTGGTGGGACCTTTTAGGTAATAGGTAACCATGTGAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGGGAGCTGGTGGGACCTTTTAGGTAATAGGTAACCATGTGAAA  599

seq1  GCCCCAGGCATGGGAAGTCCCTGCTGCAGCCTTTCCTGCAGGGATTTGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCATGGGAAGTCCCTGCTGCAGCCTTTCCTGCAGGGATTTGCT  649

seq1  TTGCTCTCTGCTTTTATTCTCTGATCACTGCAATAATGTTTTTGACTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTGCTTTTATTCTCTGATCACTGCAATAATGTTTTTGACTTTT  699

seq1  ATTGCCTGCTAACTCATTTTTCTTCTCATCAGAAATAGCACCACCCCTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGCTAACTCATTTTTCTTCTCATCAGAAATAGCACCACCCCTGT  749

seq1  TTTCATGCAGCCTTTGTATGCACGAATTCAACAAATATGTATTTGTAGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCAGCCTTTGTATGCACGAATTCAACAAATATGTATTTGTAGAA  799

seq1  GGATTGATCTAATAAGTGAGTAGCAACTTGAATACACATTTGATTTCTGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATCTAATAAGTGAGTAGCAACTTGAATACACATTTGATTTCTGC  849

seq1  CAATGTTTGACTGCCATTAAAAGACTAGGGGCAAACCTTCAAGCTCTTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTGACTGCCATTAAAAGACTAGGGGCAAACCTTCAAGCTCTTTT  899

seq1  TAGGGGGTTGTGGGTTTTTTTTTTATTGTTGTTGTTGGTGGTGGTGGTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGTTGTGGGTTTTTTTTTTATTGTTGTTGTTGGTGGTGGTGGTGA  949

seq1  TGGCTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAAATTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAAATTA  999

seq1  TTTCTTTGAGACAGAGTCTCACTGGGTAGTCTCAGCTGACCTGGAACTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGACAGAGTCTCACTGGGTAGTCTCAGCTGACCTGGAACTCA  1049

seq1  TTCTATGGACCCAGGTGGCCTTGAATTC  1070
      ||||||||||||||||||||||||||||
seq2  TTCTATGGACCCAGGTGGCCTTGAATTC  1077


seq1: chr12_27139829_27139987
seq2: B6Ng01-202P24.g_68_226

seq1  TTGGCTGAGTGAGTCAGCTGGAAGTGCAGCTAGCATGCTTGCCGCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAGTGAGTCAGCTGGAAGTGCAGCTAGCATGCTTGCCGCCTAGA  50

seq1  CACATCTGCTGTGCTTCAGTTAAAGGGTAGCCAGAAAGATAAGGTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGCTGTGCTTCAGTTAAAGGGTAGCCAGAAAGATAAGGTAGTCT  100

seq1  CTAGGTGAGCAGGTGTTCTGGAAAGAGTAGAAGGGCGGAAGGGAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAGCAGGTGTTCTGGAAAGAGTAGAAGGGCGGAAGGGAGGGAAG  150

seq1  GAGGAAGGG  159
      |||||||||
seq2  GAGGAAGGG  159


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