BAC Information

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BAC

Clone NameB6Ng01-203M12
Chromosome12 (Build37)
Map Location 24,112,608 - 24,164,298
singlet/doubletdoublet
Overlap geneLOC100043445
Upstream geneLOC77114, EG668669, EG668670, LOC668680, LOC100042895, LOC100043435, EG628081, LOC100042903, LOC100043440, EG668518
Downstream geneLOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203M12.bB6Ng01-203M12.g
ACCGA023902GA023903
length1,1231,020
definitionB6Ng01-203M12.b B6Ng01-203M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,163,181 - 24,164,298)(24,112,608 - 24,113,941)
sequence
gaattcaacaaaggtgccaagagcgaccatccattgtccggtttctgcag
tgtgatcccagcagtgctagccagttctgaggggaatgggcttttacaca
gttgtgagaaacacaggtttgacttgccatcctcagctttgcttgcaaaa
gtggttttctctgtgatttctcctgctctctagggacctgggttcagaca
gcacatcatactcacctggtctggctgcatgcagctccctcctctatctg
acccaatagatgtccctccccatccagtccaggctggttccttccaaggt
ttcaagtgttctcagctgtagggcttcttccctgcccacagaggtcctgg
aggcccttaaggacaccagacaggacttttcagtatcttaccgagaccag
ctgctttattctatgatcccagctgactttgtgaggatgaaaaagatgga
cagtagataagcaagcccttcctgtgcatggctccacctcccttgttcat
ttgctctgaccaaagctgcttgcatgtataaaccgtgatatccttacttt
taatatataagttttgtataaagtgagaaggttcagcccctgtatttaaa
gcctctgactgttgttaaagcatggtcccctgtggcctgtgattcccccc
accccctaagtctgactgtgctgtggtatttatgtatttatttgcctaat
tacacaggagatacatgcatgcccaaggctgtgaaaatctgccctccatc
ctgcaaacacaggtgttcctgtgtgctccatccttcctttctattggtct
ggcacattaaaatgatcaaataaaccaaggtctgtgagtttcctgtgttg
ccccaagcaccctgttcatggttcactctccactgagtgtgggataaagc
agataagtggtagacatggggaaagtccttgaatgtatggaacagcccga
gaatttagtcagataggagttcatgccagcctttccccactcagttgggc
tcaacacacagccaagcaattggccctcctgcttaaagcaacagaacctg
tagactggagctccagaccgtcttaatgatgttcagggaagcatcaactg
agcactgtcctggggtgagcact
gaattccccaccagagcctcaggaaagggccagtgagacagtgtgggtag
ctcgccccctacaagacagtgaaatcctccagggcactttagcgggacaa
gatgtagggacagttagatggggatgcaatgatagggaccatgttctgtc
tgtgctccttctcacagccttaagaagccagggataaagggtaaaggcag
gtgttttgcatagggagttgaccatggtacaagccaaatgggaattcaaa
cccatgaccttcgacttggaagaatactccaacccctattaagcatcctg
tcccctaagcttgtacaattagggacactcccagttacctgaagccagtt
ttacagtgctaggccaggcttcaccctgagaaaatcatagaatgcagtga
tgtgctgtgggaagtgggggacacccaagagaaccagaggtagagatggt
cctcagagagtactccaacccacagctgactgatcacagacacaattggg
ccaataaatcatctgaattaggacattttcatctatatctcattcagaaa
ttctcagctgtattttaaaaatccagagattctgaagacactagtcaaaa
atcataccctctaactccctaggcaagaggcatggttactactgctgcca
acaatacagcctagagaaactttacaaaaaccttttgtgggtctgaaaag
aagggaatgtgagggacattataagcccaacatgggaaataaaagtggtc
tcttgctgccataggacagtagaccactccatctttttaaggctcccatg
tacaaatatgctgtatgaggtagcagctggggtcagacattatgtatggc
ttctggtattttaccagcactgcctgtgaataagttcagccttcaaaaat
agctgtgccagtgggtagcttttattccggcgcaaggcaatgaactgcaa
tcctaaaactctgcactctctgccactttgcagcattgtgaacatccttc
cattagtgtctcaaggacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24163181_24164298
seq2: B6Ng01-203M12.b_40_1162 (reverse)

seq1  AGTGCTCA-CCCAGGACAGGTGCTCAGTGGGTGCTT-CCTGAACATCATT  48
      |||||||| ||||||||| ||||||||| | ||||| |||||||||||||
seq2  AGTGCTCACCCCAGGACA-GTGCTCAGTTGATGCTTCCCTGAACATCATT  49

seq1  -AGACGGTCTGGGGCT-CAGTCTACAGGTTCTGTGGCTTTAAGCAGGAGG  96
       ||||||||||| ||| ||||||||||||||||| |||||||||||||||
seq2  AAGACGGTCTGGAGCTCCAGTCTACAGGTTCTGTTGCTTTAAGCAGGAGG  99

seq1  GCCAATGGCCTTGCTGTGTGTGGAGCCC-ACTGAGTGGGGAAAGGCTGGC  145
      |||||| || | ||||||||| |||||| |||||||||||||||||||||
seq2  GCCAATTGCTTGGCTGTGTGTTGAGCCCAACTGAGTGGGGAAAGGCTGGC  149

seq1  ATGGACTCCTATCTGACTAAATTCTC-GGCTGTTCCATACATTCAAGGAC  194
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAACTCCTATCTGACTAAATTCTCGGGCTGTTCCATACATTCAAGGAC  199

seq1  TTTCCCCATGTCTACCACTTATCTGCTTTATCCCACACTCAGTGGAGAGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATGTCTACCACTTATCTGCTTTATCCCACACTCAGTGGAGAGT  249

seq1  GAACCATGAACAGGGTGCTTGGGGCAACACAGGAAACTCACAGACCTTGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGAACAGGGTGCTTGGGGCAACACAGGAAACTCACAGACCTTGG  299

seq1  TTTATTTGATCATTTTAATGTGCCAGACCAATAGAAAGGAAGGATGGAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATCATTTTAATGTGCCAGACCAATAGAAAGGAAGGATGGAGC  349

seq1  ACACAGGAACACCTGTGTTTGCAGGATGGAGGGCAGATTTTCACAGCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAACACCTGTGTTTGCAGGATGGAGGGCAGATTTTCACAGCCTT  399

seq1  GGGCATGCATGTATCTCCTGTGTAATTAGGCAAATAAATACATAAATACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCATGTATCTCCTGTGTAATTAGGCAAATAAATACATAAATACC  449

seq1  ACAGCACAGTCAGACTTAGGGGGTGGGGGGAATCACAGGCCACAGGGGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAGTCAGACTTAGGGGGTGGGGGGAATCACAGGCCACAGGGGAC  499

seq1  CATGCTTTAACAACAGTCAGAGGCTTTAAATACAGGGGCTGAACCTTCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTAACAACAGTCAGAGGCTTTAAATACAGGGGCTGAACCTTCTC  549

seq1  ACTTTATACAAAACTTATATATTAAAAGTAAGGATATCACGGTTTATACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATACAAAACTTATATATTAAAAGTAAGGATATCACGGTTTATACA  599

seq1  TGCAAGCAGCTTTGGTCAGAGCAAATGAACAAGGGAGGTGGAGCCATGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAGCTTTGGTCAGAGCAAATGAACAAGGGAGGTGGAGCCATGCA  649

seq1  CAGGAAGGGCTTGCTTATCTACTGTCCATCTTTTTCATCCTCACAAAGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGCTTGCTTATCTACTGTCCATCTTTTTCATCCTCACAAAGTC  699

seq1  AGCTGGGATCATAGAATAAAGCAGCTGGTCTCGGTAAGATACTGAAAAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGATCATAGAATAAAGCAGCTGGTCTCGGTAAGATACTGAAAAGT  749

seq1  CCTGTCTGGTGTCCTTAAGGGCCTCCAGGACCTCTGTGGGCAGGGAAGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGGTGTCCTTAAGGGCCTCCAGGACCTCTGTGGGCAGGGAAGAA  799

seq1  GCCCTACAGCTGAGAACACTTGAAACCTTGGAAGGAACCAGCCTGGACTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACAGCTGAGAACACTTGAAACCTTGGAAGGAACCAGCCTGGACTG  849

seq1  GATGGGGAGGGACATCTATTGGGTCAGATAGAGGAGGGAGCTGCATGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGGGACATCTATTGGGTCAGATAGAGGAGGGAGCTGCATGCAG  899

seq1  CCAGACCAGGTGAGTATGATGTGCTGTCTGAACCCAGGTCCCTAGAGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGGTGAGTATGATGTGCTGTCTGAACCCAGGTCCCTAGAGAGC  949

seq1  AGGAGAAATCACAGAGAAAACCACTTTTGCAAGCAAAGCTGAGGATGGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATCACAGAGAAAACCACTTTTGCAAGCAAAGCTGAGGATGGCA  999

seq1  AGTCAAACCTGTGTTTCTCACAACTGTGTAAAAGCCCATTCCCCTCAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACCTGTGTTTCTCACAACTGTGTAAAAGCCCATTCCCCTCAGAA  1049

seq1  CTGGCTAGCACTGCTGGGATCACACTGCAGAAACCGGACAATGGATGGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGCACTGCTGGGATCACACTGCAGAAACCGGACAATGGATGGTC  1099

seq1  GCTCTTGGCACCTTTGTTGAATTC  1118
      ||||||||||||||||||||||||
seq2  GCTCTTGGCACCTTTGTTGAATTC  1123

seq1: chr12_24112608_24113941
seq2: B6Ng01-203M12.g_64_1083

seq1  GAATCCCCCACCAGAACCTCAGGAAAGGGCCAGTGAGACAGTGTGGGTAG  50
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACCAGAGCCTCAGGAAAGGGCCAGTGAGACAGTGTGGGTAG  50

seq1  CTCGCCCCCTACAAGACAGTGAAATCCTCCAGGGCACTTTAGAGGGACAA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCGCCCCCTACAAGACAGTGAAATCCTCCAGGGCACTTTAGCGGGACAA  100

seq1  GATGTAGGGACAGTTAGTTGGGGATGCAATGATAGGGACCATGTTCTGTC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGTAGGGACAGTTAGATGGGGATGCAATGATAGGGACCATGTTCTGTC  150

seq1  TGTGCTCCTTCTCACAGCCTTAAGAAGCCAG-------GGGTAAAGGCAG  193
      |||||||||||||||||||||||||||||||       ||||||||||||
seq2  TGTGCTCCTTCTCACAGCCTTAAGAAGCCAGGGATAAAGGGTAAAGGCAG  200

seq1  GTATTTTGTATAGGGAGTTGACCATGGTACAAGCCGAATGGGAATTCAAA  243
      || ||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTTTTGCATAGGGAGTTGACCATGGTACAAGCCAAATGGGAATTCAAA  250

seq1  CCCATGACCTTCGACTTGGAAGAATACTCCAACCCCTATTAAGCATCCTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACCTTCGACTTGGAAGAATACTCCAACCCCTATTAAGCATCCTG  300

seq1  TTCCCTAAGCTTGTACAATTAGGGACACTCCCAGTTACCTGAAGACAGTT  343
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCCTAAGCTTGTACAATTAGGGACACTCCCAGTTACCTGAAGCCAGTT  350

seq1  TTACAGTGCTAGGCCAGGCTTCACCCTGAGAAAATCATAGAATGCAGTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGCTAGGCCAGGCTTCACCCTGAGAAAATCATAGAATGCAGTGA  400

seq1  TGTTCTGTGGGAAGTGGGGGATACCCAAGAGAACCAGAGGTAGAGATGGT  443
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGCTGTGGGAAGTGGGGGACACCCAAGAGAACCAGAGGTAGAGATGGT  450

seq1  CCTCAGAGAGTACTCCAACCCACAGCTGACTGAACACAGACACAATTGGG  493
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCAGAGAGTACTCCAACCCACAGCTGACTGATCACAGACACAATTGGG  500

seq1  CCAATAAATCATCTGAATTAGGACATTTTCGTCTATATCTCATTCAGAAA  543
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAATAAATCATCTGAATTAGGACATTTTCATCTATATCTCATTCAGAAA  550

seq1  TTCTCAGCTGTATTTTATTTTATTTTTTTAAACATTTTGTGTTCATTTTA  593
      ||||||||                                          
seq2  TTCTCAGC------------------------------------------  558

seq1  ATGATAAAAAAGGGCACAGGATAAAAAAAAACCTTATATTTCACTTATAT  643
                                                        
seq2  --------------------------------------------------  558

seq1  TGCATAACGAGCTAACCAAACTGGACATGGGGGATGAATTATAAAACAAA  693
                                                        
seq2  --------------------------------------------------  558

seq1  TCATTTTATGTATCCTCCTAGGACTATTCTTCAATTAGACTTCTGTATTT  743
                                                        
seq2  --------------------------------------------------  558

seq1  CAAATAAGGCTGAGGTATAGTACACTAAGAGGCAAAAAAGAATAGTGCCA  793
                                                        
seq2  --------------------------------------------------  558

seq1  AAGTAACAGATCCCCAAAACCAGACCCCATGTCAGAACACATCATAGAGC  843
                                                        
seq2  --------------------------------------------------  558

seq1  AAACATTTATCAGATCAGAGCCTCAATGTATTTTAAAAACCCAGAGTTTC  893
                                ||||||||||||| |||||| |||
seq2  --------------------------TGTATTTTAAAAATCCAGAGATTC  582

seq1  TGAAGACACTAGTCAAAAATCACACCCTCTAACTCCCCGAGGCAAGAGGT  943
      |||||||||||||||||||||| ||||||||||| ||| |||||||||| 
seq2  TGAAGACACTAGTCAAAAATCATACCCTCTAACT-CCCTAGGCAAGAGGC  631

seq1  ATGGTTACTGCTGCTGCCAACAATACAGCCTAGAGAAACTTTACAAAAAC  993
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACTACTGCTGCCAACAATACAGCCTAGAGAAACTTTACAAAAAC  681

seq1  CTTTTGTGGGTCTGAAAAGAAGGGAATGTGAGGGACATTATAAGCCCAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGGGTCTGAAAAGAAGGGAATGTGAGGGACATTATAAGCCCAAC  731

seq1  ATGGGAAATAAAAGTGGTCTCCTGCTGCCATAGGACAGTAGACCACTCCA  1093
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGGGAAATAAAAGTGGTCTCTTGCTGCCATAGGACAGTAGACCACTCCA  781

seq1  TCTTTTTAAGGCTCCCATGTACAAATATGCTGTATGAGGTAGCAGCTGAG  1143
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTTTAAGGCTCCCATGTACAAATATGCTGTATGAGGTAGCAGCTGGG  831

seq1  GTCAGACATTATGTATGGCTTCTGGTATTTTACCAGCACTGCCTGTGAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACATTATGTATGGCTTCTGGTATTTTACCAGCACTGCCTGTGAAT  881

seq1  AAGTTCAGCCTTCAAAAATAGCTGTGCCAGTGGGTAGCTTTTATTCCTGC  1243
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGTTCAGCCTTCAAAAATAGCTGTGCCAGTGGGTAGCTTTTATTCCGGC  931

seq1  GCAAGGCAATAAACTGCAATCCCAAAATTCTGCAACTCTCTGCCACTTTC  1293
      |||||||||| ||||||||||| |||| ||||| ||||||||||||||| 
seq2  GCAAGGCAATGAACTGCAATCCTAAAACTCTGC-ACTCTCTGCCACTTTG  980

seq1  CACCATTGTGAACATCCTTCCATTTAGTGTCTCAGGGACAC  1334
      || ||||||||||||||||||| ||||||||||| ||||||
seq2  CAGCATTGTGAACATCCTTCCA-TTAGTGTCTCAAGGACAC  1020