BAC Information

Click to search

BAC

Clone NameB6Ng01-203M24
Chromosome12 (Build37)
Map Location 56,088,687 - 56,293,703
singlet/doubletdoublet
Overlap geneBaz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2
Downstream geneLOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203M24.bB6Ng01-203M24.g
ACCGA023926GA023927
length9881,111
definitionB6Ng01-203M24.b B6Ng01-203M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,292,723 - 56,293,703)(56,088,687 - 56,089,806)
sequence
gaattctcagctcctcctgcaccatgcctgcctggatgctgccatgttct
ccagttttgataatggactgaacctctgaatctgtgagccagcctcaatg
aaatgttgtccttataagagttgccttggtcatggtgtctgctcacagca
gtaaaaccctaactaagacatcacctaattactacagtaatatgccacag
gctagacaatgcatctagagctaaagtttaagctaagctcttagcaactg
agatgtcagttaatcagaccagtcacgttcagtccaaaagcagaggatgt
tgagatgacatttgattaaattctataatgctcagaactttgtaactgaa
acaaagcagaatgtaaagagaagggatttggggactgaagaatggtggtg
cagggcactttgctgcttctccagaagacctacctgcacttggttcaatg
acaatggccccataggctcatggtcttgaacacttggtcccagttggtgg
gactgttggggaagggttaggaggcatggtgttgttagagatgatgccag
gagcaggttttgaggtttcgaaagcctcttcccatccccagtgtgtcact
cttcctgcctcctcctgacagatcaagatgtgcactctcagctgttcctg
cctttgctcaaccatacatggaacgtgtgtgtggcacacagaccctgggg
gcagccaacagttctctaattgggctggaaccctagccaacttacccagg
ggtttagtgaagtcagatcttgtaggaaaatctacaactgccattttact
aaatctgcataactaaatcaaattctaaatatttgtccttgtacctacag
gtagatttccttcacccccatcaagaaacttctcctcccacagatagaga
ccaatacagaaacaacaatctattaaaatgcagaggttgtggtatctagt
ccctttttttttttttttgatttattcaagagcagggt
gaattctctaggaagtagttattaatagcacctacaacagtcccctaaac
aaggggcaagaagaaaatttaatttacaaggtgagtgttgtgtgtgcgtg
catgagagagagacagagagatagagacagagagagagagataggtgaac
ccaggggcctaagcatgctaagcccctagcctgaggtctgtattagcaca
gtatgcatataatccaaaagttaaaataagtgggaatctagaaagggatt
aaactctctgaatacttctagttttcaacttactatttgctacattttaa
aaattgttaaattatcgaaaatcgagataggcaggcaaatggctctgtgg
attaagacacttgtcaccaaacctgactacctaggttccatttccagaac
ccacataggggaaagagagaacccactcccatagattgtcctttgatctc
ctcttttgtgtgcccccccactccaataagtaaatatgattttaaatttt
tctttaaaaatttaaaagcaagtgtttattttcttattataaatacaaat
attgactatttagattattttattatgctcccaaaattaagattttattc
ttttacctatcaaataaatactatcaaaatcgatttttctgttctcatac
tcaattttcagtatacttatgttctgggttttatgtatagtttatttaat
ttgtgactgttagaaggtgttatgtaagcttagaaaactaaaattatcat
gtacaaaagtttgttttcttggggtcattaggataagaatggcccccata
ggctcagatatttgaatgctgagtcaccaaggagtgaaattctttgaaaa
gattagaccgattaggaggcgtgaccctgttggaggaagtgtgccactgg
aggtgtgctttaaagtttgaaaagccctggtaaggtccaggctctctctc
atcctctgcctgtggatcagacacatctttcatctatagtcagacctcag
agtctagaagcactgttctcaatatcagactgagtctcccatgtgaagaa
acagcgcaagctagtgtgttctagaacttctgctggccaggaatccactg
tgagttagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56292723_56293703
seq2: B6Ng01-203M24.b_46_1033 (reverse)

seq1  ACCCTG-TCTTGAA-AAATCAAAAAAAAAAAAA---GGACTAGATACCAC  45
      |||||| ||||||| ||||||||||||||||||   ||||||||||||||
seq2  ACCCTGCTCTTGAATAAATCAAAAAAAAAAAAAAAGGGACTAGATACCAC  50

seq1  AA-CTCTGCATTTTAATTGATTGTTGTTTCTGTATTGGTCTCTATCTGTT  94
      || |||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AACCTCTGCATTTTAATAGATTGTTGTTTCTGTATTGGTCTCTATCTG-T  99

seq1  GGGAGGAGAAGTTTCTTTGATGGGGGTGA--GGAATCTACCTGTAGGTAC  142
      ||||||||||||||| |||||||||||||  | |||||||||||||||||
seq2  GGGAGGAGAAGTTTC-TTGATGGGGGTGAAGGAAATCTACCTGTAGGTAC  148

seq1  AAGGACAAATATTTAGAATTTGATTTAGTTATGCAGATTTAGTAAAATGG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAATATTTAGAATTTGATTTAGTTATGCAGATTTAGTAAAATGG  198

seq1  CAGTTGTAGATTTTCCTACAAGATCTGACTTCACT-AACCCCTGGGTAAG  241
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGTTGTAGATTTTCCTACAAGATCTGACTTCACTAAACCCCTGGGTAAG  248

seq1  TTGGCTAGGGTTCCAGCCCAATTAGAGAACTGTTGGCTGCCCCCAGGGTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAGGGTTCCAGCCCAATTAGAGAACTGTTGGCTGCCCCCAGGGTC  298

seq1  TGTGTGCCACACACACGTTCCATGTATGGTTGAGCAAAGGCAGGAACAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCACACACACGTTCCATGTATGGTTGAGCAAAGGCAGGAACAGC  348

seq1  TGAGAGTGCACATCTTGATCTGTCAGGAGGAGGCAGGAAGAGTGACACAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGCACATCTTGATCTGTCAGGAGGAGGCAGGAAGAGTGACACAC  398

seq1  TGGGGATGGGAAGAGGCTTTCGAAACCTCAAAACCTGCTCCTGGCATCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGGGAAGAGGCTTTCGAAACCTCAAAACCTGCTCCTGGCATCAT  448

seq1  CTCTAACAACACCATGCCTCCTAACCCTTCCCCAACAGTCCCACCAACTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAACACCATGCCTCCTAACCCTTCCCCAACAGTCCCACCAACTG  498

seq1  GGACCAAGTGTTCAAGACCATGAGCCTATGGGGCCATTGTCATTGAACCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGTGTTCAAGACCATGAGCCTATGGGGCCATTGTCATTGAACCA  548

seq1  AGTGCAGGTAGGTCTTCTGGAGAAGCAGCAAAGTGCCCTGCACCACCATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTAGGTCTTCTGGAGAAGCAGCAAAGTGCCCTGCACCACCATT  598

seq1  CTTCAGTCCCCAAATCCCTTCTCTTTACATTCTGCTTTGTTTCAGTTACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCCCAAATCCCTTCTCTTTACATTCTGCTTTGTTTCAGTTACA  648

seq1  AAGTTCTGAGCATTATAGAATTTAATCAAATGTCATCTCAACATCCTCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGAGCATTATAGAATTTAATCAAATGTCATCTCAACATCCTCTG  698

seq1  CTTTTGGACTGAACGTGACTGGTCTGATTAACTGACATCTCAGTTGCTAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGACTGAACGTGACTGGTCTGATTAACTGACATCTCAGTTGCTAA  748

seq1  GAGCTTAGCTTAAACTTTAGCTCTAGATGCATTGTCTAGCCTGTGGCATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAGCTTAAACTTTAGCTCTAGATGCATTGTCTAGCCTGTGGCATA  798

seq1  TTACTGTAGTAATTAGGTGATGTCTTAGTTAGGGTTTTACTGCTGTGAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAGTAATTAGGTGATGTCTTAGTTAGGGTTTTACTGCTGTGAGC  848

seq1  AGACACCATGACCAAGGCAACTCTTATAAGGACAACATTTCATTGAGGCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATGACCAAGGCAACTCTTATAAGGACAACATTTCATTGAGGCT  898

seq1  GGCTCACAGATTCAGAGGTTCAGTCCATTATCAAAACTGGAGAACATGGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGATTCAGAGGTTCAGTCCATTATCAAAACTGGAGAACATGGC  948

seq1  AGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAATTC  981
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAATTC  988

seq1: chr12_56088687_56089806
seq2: B6Ng01-203M24.g_61_1171

seq1  GAATTCTCTAGGAAGTAGTTATTAATAGCACCTACAACAGTCCCCTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGAAGTAGTTATTAATAGCACCTACAACAGTCCCCTAAAC  50

seq1  AAGGGGCAAGAAGAAAATTTAATTTACAAGGTGAGTGTTGTGTGTGCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAAGAAGAAAATTTAATTTACAAGGTGAGTGTTGTGTGTGCGTG  100

seq1  CATGAGAGAGAGACAGAGAGATAGAGACAGAGAGAGAGAGATAGGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGAGAGACAGAGAGATAGAGACAGAGAGAGAGAGATAGGTGAAC  150

seq1  CCAGGGGCCTAAGCATGCTAAGCCCCTAGCCTGAGGTCTGTATTAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCCTAAGCATGCTAAGCCCCTAGCCTGAGGTCTGTATTAGCACA  200

seq1  GTATGCATATAATCCAAAAGTTAAAATAAGTGGGAATCTAGAAAGGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATATAATCCAAAAGTTAAAATAAGTGGGAATCTAGAAAGGGATT  250

seq1  AAACTCTCTGAATACTTCTAGTTTTCAACTTACTATTTGCTACATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCTGAATACTTCTAGTTTTCAACTTACTATTTGCTACATTTTAA  300

seq1  AAATTGTTAAATTATCGAAAATCGAGATAGGCAGGCAAATGGCTCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAAATTATCGAAAATCGAGATAGGCAGGCAAATGGCTCTGTGG  350

seq1  ATTAAGACACTTGTCACCAAACCTGACTACCTAGGTTCCATTTCCAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACACTTGTCACCAAACCTGACTACCTAGGTTCCATTTCCAGAAC  400

seq1  CCACATAGGGGAAAGAGAGAACCCACTCCCATAGATTGTCCTTTGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGGGGAAAGAGAGAACCCACTCCCATAGATTGTCCTTTGATCTC  450

seq1  CTCTTTTGTGTGCCCCCCCACTCCAATAAGTAAATATGATTTTAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTGTGCCCCCCCACTCCAATAAGTAAATATGATTTTAAATTTT  500

seq1  TCTTTAAAAATTTAAAAGCAAGTGTTTATTTTCTTATTATAAATACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAATTTAAAAGCAAGTGTTTATTTTCTTATTATAAATACAAAT  550

seq1  ATTGACTATTTAGATTATTTTATTATGCTCCCAAAATTAAGATTTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATTTAGATTATTTTATTATGCTCCCAAAATTAAGATTTTATTC  600

seq1  TTTTACCTATCAAATAAATACTATCAAAATCGATTTTTCTGTTCTCATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTATCAAATAAATACTATCAAAATCGATTTTTCTGTTCTCATAC  650

seq1  TCAATTTTCAGTATACTTATGTTCTGGGTTTTATGTATAGTTTATTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCAGTATACTTATGTTCTGGGTTTTATGTATAGTTTATTTAAT  700

seq1  TTGTGACTGTTAGAAGGTGTTATGTAAGCTTAGAAAACTAAAATTATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTGTTAGAAGGTGTTATGTAAGCTTAGAAAACTAAAATTATCAT  750

seq1  GTACAAAAGTTTGTTTTCTTGGGGTCATTAGGATAAGAATGGCCCCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAGTTTGTTTTCTTGGGGTCATTAGGATAAGAATGGCCCCCATA  800

seq1  GGCTCAGATATTTGAATGCTGAGTCACCAAGGAGTGAAATTCTTTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGATATTTGAATGCTGAGTCACCAAGGAGTGAAATTCTTTGAAAA  850

seq1  GATTAGACCGATTAGGAGGCGTGACCCTGTTGGAGGAAGTGTGCCACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGACCGATTAGGAGGCGTGACCCTGTTGGAGGAAGTGTGCCACTGG  900

seq1  AGGTGTGCTTTAAGGTTTGAAAAGCCCTGGTAAGGTCCAGGCTCTCTCTC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCTTTAAAGTTTGAAAAGCCCTGGTAAGGTCCAGGCTCTCTCTC  950

seq1  ATCCTCTGCCTGTGGATCAGGACACATCTTTCATCTATAGTCAGACCTCA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCCTCTGCCTGTGGATCA-GACACATCTTTCATCTATAGTCAGACCTCA  999

seq1  GAGGTCTAGAGCCACTGTTCTC-ATATCAGACTGAGGGCCTCCCATGTGA  1049
      || |||||||  |||||||||| ||||||||||||  | |||||||||||
seq2  GA-GTCTAGAAGCACTGTTCTCAATATCAGACTGA--GTCTCCCATGTGA  1046

seq1  AG-AACAGCGCAGAGCTTAGGTGTGTTCTAG-ACCTCTGCTGCCCAGGAG  1097
      || ||||||||| ||||   ||||||||||| || ||||||| ||||  |
seq2  AGAAACAGCGCA-AGCT--AGTGTGTTCTAGAACTTCTGCTGGCCAG--G  1091

seq1  AATCACCTGTGAGTGTTTAGAAA  1120
      ||||  |||||||   |||||||
seq2  AATCCACTGTGAG---TTAGAAA  1111