BAC Information

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BAC

Clone NameB6Ng01-203N13
Chromosome12 (Build37)
Map Location 48,258,785 - 48,259,913
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203N13.bB6Ng01-203N13.g
ACCGA023951GA023952
length1,1991,116
definitionB6Ng01-203N13.b B6Ng01-203N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccccaaaacacagaatttgtctaaatacagaattttcctgact
cagctgtattactatatgactagctatacccaactgactctatatcctaa
cctagatacacttgtctatctatgtttattgataatctattcacaaccat
aaaatgaatcaccttatgtgtccatataaataataatacatagttaaaat
atgatatatacaatgcaattacacagtttactgtgaaatggatggaactg
agaaataaacaaaatgaagtaacccagactcgggtaaacatgacatattc
tctgttgcatgcagatcctgagtattgagtagaaactatggcatttaggt
agaaatgcatgtagatagaggtcaggaaaccagaaaggagaaaggggctt
tactggagctgcacaggaagctgagatgttaggaacactttaagaaccca
ggttcaatgtttaccttccacacggtgatctcactcatccataacttcaa
ttccagggaacctagtatcttttttgacctctgcagacaccaaaagtgca
taaaatacattattattgttataaaacacatacaaacatacaaatacaca
tacagacacacacacacacacacacagagagagagagagagtcgatgata
gcttcaagaggatcgtgaatatttaagaaagatccccaccttccttcact
gtccctaccagtcctagcacccagaaattcttaaggagtctcatgaaaga
gtgatacaaagattgcaggagcaagaagacgagaatatgctgccagggag
tgtcttgtagacatgagagggaatgtgtacttatgaaatgttaatgatgt
ggctgcataaacaaaatttgcctaactatgatagcagttgccaggtccca
tccctagatgagaagttacaggcaatggtttgctgaaagagggaaaactc
tgacaggtaatgcagtaccaaatagtctgccctaaattcatgtaaataag
ttacagtaattggactctatagacgtacacacaaagaccagcagaggaga
gaggagagagacggagacgagagatgagatgacggaacgacgattggtaa
gagagacgaactggaccgagagagaacgaggcgtacgaaatgatacctaa
ccgaagaattcagcagagaaacggggagagaggatgtaaaaaattttcg
gaattcactctgctcttagagttgcaacacgagaggaaagagatagtcac
cgtctgcacttccttcagtttctaggctgatttgtgacctgtttgaaact
tgtcaccatgtttcatggtttgttttaaactaaacagtagaaagtacata
ctgagggaaaactggcattatatactgcctgtaattaaaaatggaaagga
aatcagaccaagtttttatttagaagttacattgaagcaggagccagaat
tatgtctgaacctccaaaatacgatttttgtgtgaagaagaatctttgta
tgataaacagtttctcccaaatttcttcttagaagaattaaagtaggaaa
acaaatcttatgagctaaatgtggcagaagctattttggttcatggaaaa
tacatttgtcaccccctttttttgcagtcagtcccacccatttcaaggct
gactcaataggtggagcaggtgttatagtcccagtgagctcatggggttg
gggagctccttgtcttgcctgtcaccctctagctctgactcttcagccca
tgggggttgggcactcgctattctgtgcaaaatgcaatcccattgtatat
gaactaaagacagtcattttgagttgagctactttgcgttaattgtgatt
acaagttaagtacattggggtacacagtaaatggtacttcttaggagact
ttatgtcagtcaaagaaaatctcttaaaatttatgctctttcataattgc
tgaacacgtttcctgcttattaagctccacagcacttaaatctaggtgtt
attttgttcagtgttggatcaaatattaaattcatttatttgttatttac
tgtgtaatgctttaaatttagagcactgtttctcaacctgtggcctgcga
ctcctttgggcagctgacagcacttttcatgggggtcacctaagaccact
gaaaacaccaatattcaaattatactcagagcagatgtagcaaattacag
ttatgagtagcacaaaaatattttatggttcggatcgccacatcatgaga
cagtatttcaggttgcagcaatgaaaaaggagaccactgctttagtgatc
ttgtgggagttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48258785_48259913
seq2: B6Ng01-203N13.g_64_1179

seq1  GAATTCACTCTGCTCTTAGAGTTGCAACACGAGAGGAAAGAGATAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCTCTTAGAGTTGCAACACGAGAGGAAAGAGATAGTCAC  50

seq1  CGTCTGCACTTCCTTCAGTTTCTAGGCTGATTTGTGACCTGTTTGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCACTTCCTTCAGTTTCTAGGCTGATTTGTGACCTGTTTGAAACT  100

seq1  TGTCACCATGTTTCATGGTTTGTTTTAAACTAAACAGTAGAAAGTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATGTTTCATGGTTTGTTTTAAACTAAACAGTAGAAAGTACATA  150

seq1  CTGAGGGAAAACTGGCATTATATACTGCCTGTAATTAAAAATGGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAAACTGGCATTATATACTGCCTGTAATTAAAAATGGAAAGGA  200

seq1  AATCAGACCAAGTTTTTATTTAGAAGTTACATTGAAGCAGGAGCCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACCAAGTTTTTATTTAGAAGTTACATTGAAGCAGGAGCCAGAAT  250

seq1  TATGTCTGAACCTCCAAAATACGATTTTTGTGTGAAGAAGAATCTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGAACCTCCAAAATACGATTTTTGTGTGAAGAAGAATCTTTGTA  300

seq1  TGATAAACAGTTTCTCCCAAATTTCTTCTTAGAAGAATTAAAGTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACAGTTTCTCCCAAATTTCTTCTTAGAAGAATTAAAGTAGGAAA  350

seq1  ACAAATCTTATGAGCTAAATGTGGCAGAAGCTATTTTGGTTCATGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTTATGAGCTAAATGTGGCAGAAGCTATTTTGGTTCATGGAAAA  400

seq1  TACATTTGTCACCCCCTTTTTTTGCAGTCAGTCCCACCCATTTCAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTCACCCCCTTTTTTTGCAGTCAGTCCCACCCATTTCAAGGCT  450

seq1  GACTCAATAGGTGGAGCAGGTGTTATAGTCCCAGTGAGCTCATGGGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATAGGTGGAGCAGGTGTTATAGTCCCAGTGAGCTCATGGGGTTG  500

seq1  GGGAGCTCCTTGTCTTGCCTGTCACCCTCTAGCTCTGACTCTTCAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCCTTGTCTTGCCTGTCACCCTCTAGCTCTGACTCTTCAGCCCA  550

seq1  TGGGGGTTGGGCACTCGCTATTCTGTGCAAAATGCAATCCCATTGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTGGGCACTCGCTATTCTGTGCAAAATGCAATCCCATTGTATAT  600

seq1  GAACTAAAGACAGTCATTTTGAGTTGAGCTACTTTGCGTTAATTGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGACAGTCATTTTGAGTTGAGCTACTTTGCGTTAATTGTGATT  650

seq1  ACAAGTTAAGTACATTGGGGTACACAGTAAATGGTACTTCTTAGGAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAGTACATTGGGGTACACAGTAAATGGTACTTCTTAGGAGACT  700

seq1  TTATGTCAGTCAAAGAAAATCTCTTAAAATTTATGCTCTTTCATAATTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAGTCAAAGAAAATCTCTTAAAATTTATGCTCTTTCATAATTGC  750

seq1  TGAACACGTTTCCTGCTTATTAAGCTCCACAGCACTTAAATCTAGGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACGTTTCCTGCTTATTAAGCTCCACAGCACTTAAATCTAGGTGTT  800

seq1  ATTTTGTTCAGTGTTGGATCAAATATTAAATTCATTTATTTGTTATTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCAGTGTTGGATCAAATATTAAATTCATTTATTTGTTATTTAC  850

seq1  TGTGTAATGCTTTAAATTTAGAGCACTGTTTCTCAACCTGTGGCCTGCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATGCTTTAAATTTAGAGCACTGTTTCTCAACCTGTGGCCTGCGA  900

seq1  CTCCTTT-GGCAGCTGACAGCAC-TTTCATGGGGGTCACCTAAGACCACT  948
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCCTTTGGGCAGCTGACAGCACTTTTCATGGGGGTCACCTAAGACCACT  950

seq1  GAAAACACCAATATTCAAATTATAACTCAGAGCAGATGTAGCAAAATTAC  998
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GAAAACACCAATATTCAAATTAT-ACTCAGAGCAGATGTAGC-AAATTAC  998

seq1  AGTTATGAAGTAGCAACAAAAATAATTTTATGGTTCGGATCGCCACATCA  1048
      ||||||| |||||| |||||||| ||||||||||||||||||||||||||
seq2  AGTTATG-AGTAGC-ACAAAAAT-ATTTTATGGTTCGGATCGCCACATCA  1045

seq1  TGAAGAACAGTATTTCAGGTTTGCAGCATTAGAAACAGGGAGAACCCACT  1098
      |||   ||||||||||||| |||||||| | |||| | |||||  |||||
seq2  TGA--GACAGTATTTCAGG-TTGCAGCAAT-GAAA-AAGGAGA--CCACT  1088

seq1  GCTTTAGTGATCTTTGTGGGGAGGTTTTTTT  1129
      |||||||||||| |||| ||||| |||||| 
seq2  GCTTTAGTGATC-TTGT-GGGAGTTTTTTT-  1116