BAC Information

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BAC

Clone NameB6Ng01-203P20
Chromosome12 (Build37)
Map Location 60,144,192 - 60,319,453
singlet/doubletdoublet
Overlap geneTrappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1
Downstream geneLOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203P20.bB6Ng01-203P20.g
ACCGA024056GA024057
length1,1821,047
definitionB6Ng01-203P20.b B6Ng01-203P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,144,192 - 60,145,355)(60,318,425 - 60,319,453)
sequence
gaattctctcgacagaaataaattataagcaatacaataaaaattaagct
taatttaacatagtggtttgcttttttaaataactaaaacagatttatag
ttcaacaaattttggtcatttgaacacaaactattctgattggtgcattt
tttttaatacagcaattcaacacaccctgagtttcacttcctattgatgg
ttaaatgctaatcacctatggaaataaagatgtttaaaatgaagagcctt
gcatcttggtgtctagttctctgaaatcactgaataggtcagtcagtttc
tgtcatggtcaaaggacctgtgtctactttgatttggtctatgtgactct
ggtgagataacgatttgctccaacgcagataaccaacgatgaggtgaaat
caggatgtgcaacgctctgcccaggagtcgccagctcgctctacagcttc
tgtatcatcacctgaaatttgcctgaaaaaaggaacagaaccattctctg
attttcgggcacaaggaaaacaagcatactggtttccacttgggaagtag
tttcactcaaagaacttgctatgccagaggtcttttcacagtccttaaga
cattcaataaagtcgatcccactgcataattatctgttttatgaggaggt
gcctaggtttgtctccattcctgtttcctttttctctctctcccctctct
ctccctctttctctattttgagaagggtcctcactatgtatgtgccctgg
cttctaggcaagcctcagactccccaagactggcctgcctccacttcccg
aacgctgggattgaaggagtcaccacgctggggattctgggtattttcac
tactaattttgtcagtgggcagaaaagtaatgcagcaaaattcaactcaa
ctgtattctcggttagtagcttgagtgagaaggataaatacacatttacc
aaggcaaagggccaggaaagtcaaagtgtcaaccatttttagtctcttct
aagtttaaaaggagaaaagattgatatgtacgtgtagacaagtaaagctg
aaccttacagggcaggcatggagagactttcagctggtaccaataccttt
ttattccgaggtttcgaacaaacctacctctgataaggccacatggtgga
tgccttgatactaacaaggagagaaaaaaagg

gaattctttaacagtccttttcttacctgaaatagttttactagcctggg
ccatgtccaaagactgggaggagtgctagttaaaatcattaggggaggaa
aattgtcagacttgaagccgcatcccatacaccatcaggctggacttact
cccagtgattcacacaaaagtaacgctacctaacttggggtgggataaag
gagctgggcatactgtgggggttaagtatgagactcattgtgcatcagga
ctttagtgtaattccacctagagctcatggcccatattcggactccagca
cagagtccctatgaaagtctagtgcctgccaaaccatatttatattttct
ttatctggatattcattccaaacttacaatgtcactcttaatttggaaga
aaaataattgcagcagtttacaaataattattagtgattggacattccaa
cactgctagggtcagggcagaaaatattgtactgtagagagcagaactgg
gtgcttactaggtcaagtgatgtacatgctgttgtgtggcagttttcctc
taagcagtgtccttccttccacaatctatatcccaccatctttatgttaa
atagagttgagaatagattgtgattaatactaagtcatatgtgtcataca
tattttcgtgatctataattaaatcaagagtttaagcagggtggtggcag
cacacgcctttaaagctagagcttgggaggcaaaggcaggaggatctctg
cctttgaggacaacctggactacagagtgagttccaggaaagccagggtt
ttcacagagaaaccctgcttccaaataggttaaactgtaagtattctagc
ctcattgtgtatggaagccaagtgcaatgattacagatctggaattcccg
ggacctggagctagaggcagggagcttaaagtgagttcagggtcatcatc
cttgttgcagagcaaggttcaaggccagcatggtgctttgtgaactcctt
gcctctcaagaaacaaaacaagaccctgttggtgggtggtgcacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60144192_60145355
seq2: B6Ng01-203P20.b_49_1230

seq1  GAATTCTCTCGACAGAAATAAATTATAAGCAATACAATAAAAATTAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGACAGAAATAAATTATAAGCAATACAATAAAAATTAAGCT  50

seq1  TAATTTAACATAGTGGTTTGCTTTTTTAAATAACTAAAACAGATTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAACATAGTGGTTTGCTTTTTTAAATAACTAAAACAGATTTATAG  100

seq1  TTCAACAAATTTTGGTCATTTGAACACAAACTATTCTGATTGGTGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAATTTTGGTCATTTGAACACAAACTATTCTGATTGGTGCATTT  150

seq1  TTTTTAATACAGCAATTCAACACACCCTGAGTTTCACTTCCTATTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATACAGCAATTCAACACACCCTGAGTTTCACTTCCTATTGATGG  200

seq1  TTAAATGCTAATCACCTATGGAAATAAAGATGTTTAAAATGAAGAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTAATCACCTATGGAAATAAAGATGTTTAAAATGAAGAGCCTT  250

seq1  GCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGTTTC  300

seq1  TGTCATGGTCAAAGGACCTGTGTCTACTTTGATTTGGTCTATGTGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGTCAAAGGACCTGTGTCTACTTTGATTTGGTCTATGTGACTCT  350

seq1  GGTGAGATAACGATTTGCTCCAACGCAGATAACCAACGATGAGGTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATAACGATTTGCTCCAACGCAGATAACCAACGATGAGGTGAAAT  400

seq1  CAGGATGTGCAACGCTCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTGCAACGCTCTGCCCAGGAGTCGCCAGCTCGCTCTACAGCTTC  450

seq1  TGTATCATCACCTGAAATTTGCCTGAAAAAAGGAACAGAACCATTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATCACCTGAAATTTGCCTGAAAAAAGGAACAGAACCATTCTCTG  500

seq1  ATTTTCGGGCACAAGGAAAACAAGCATACTGGTTTCCACTTGGGAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCGGGCACAAGGAAAACAAGCATACTGGTTTCCACTTGGGAAGTAG  550

seq1  TTTCACTCAAAGAACTTGCTATGCCAGAGGTCTTTTCACAGTCCTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCAAAGAACTTGCTATGCCAGAGGTCTTTTCACAGTCCTTAAGA  600

seq1  CATTCAATAAAGTCGATCCCACTGCATAATTATCTGTTTTATGAGGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATAAAGTCGATCCCACTGCATAATTATCTGTTTTATGAGGAGGT  650

seq1  GCCTAGGTTTGTCTCCATTCCTGTTTCCTTTTTCTCTCTCTCCCCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTTTGTCTCCATTCCTGTTTCCTTTTTCTCTCTCTCCCCTCTCT  700

seq1  CTCCCTCTTTCTCTATTTTGAGAAGGGTCCTCACTATGTATGTGCCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTTCTCTATTTTGAGAAGGGTCCTCACTATGTATGTGCCCTGG  750

seq1  CTTCTAGGCAAGCCTCAGACTCCCCAAGACTGGCCTGCCTCCACTTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGCAAGCCTCAGACTCCCCAAGACTGGCCTGCCTCCACTTCCCG  800

seq1  AACGCTGGGATTGAAGGAGTCACCACGCTGGGGATTCTGGGTA-TTTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACGCTGGGATTGAAGGAGTCACCACGCTGGGGATTCTGGGTATTTTCAC  850

seq1  TACTAA-TTTGTCAGTGGGCAGAAAAGTAATGCAGCAAAATTCAACTCAA  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTTGTCAGTGGGCAGAAAAGTAATGCAGCAAAATTCAACTCAA  900

seq1  CTGTATTCTCGGTTAGTAGCTTGAGTGAGAA-GATAAATACACA-TTACC  946
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CTGTATTCTCGGTTAGTAGCTTGAGTGAGAAGGATAAATACACATTTACC  950

seq1  AAGGCAAAGGG-CAGGAAAGTCAAAGTGTCAACCA-TTTTAGTCTCCTCT  994
      ||||||||||| ||||||||||||||||||||||| |||||||||| |||
seq2  AAGGCAAAGGGCCAGGAAAGTCAAAGTGTCAACCATTTTTAGTCTCTTCT  1000

seq1  AAGTTTAAAA-GAG-AAAGA-TGATATGTACGTGTAAGACAAGT-AAGCT  1040
      |||||||||| ||| ||||| |||||||||||||| |||||||| |||||
seq2  AAGTTTAAAAGGAGAAAAGATTGATATGTACGTGT-AGACAAGTAAAGCT  1049

seq1  GAA-CTTACA-GGCAGGCATTGAAGAGAC-TTCAGCTGTTA-CAATA-CT  1085
      ||| |||||| |||||||| || |||||| |||||||| || ||||| ||
seq2  GAACCTTACAGGGCAGGCA-TGGAGAGACTTTCAGCTGGTACCAATACCT  1098

seq1  TTTTATTCCCAAG-TTCG-ACAAACC-ACCTCTGATTAAGCCACAT-GTG  1131
      ||||||||| | | |||| ||||||| ||||||||| | ||||||| |||
seq2  TTTTATTCCGAGGTTTCGAACAAACCTACCTCTGATAAGGCCACATGGTG  1148

seq1  AATG-CTAGATACTAAAAAGGAGAGAAAAAAAGG  1164
       ||| || |||||||| |||||||||||||||||
seq2  GATGCCTTGATACTAACAAGGAGAGAAAAAAAGG  1182


seq1: chr12_60318425_60319453
seq2: B6Ng01-203P20.g_71_1116 (reverse)

seq1  ACGTGCACCACCACACCA----GGTCTTGTTTTGTTTCTT--GAGGC-AG  43
      |||||||||||| |||||    ||||||||||||||||||  ||||| ||
seq2  ACGTGCACCACC-CACCAACAGGGTCTTGTTTTGTTTCTTGAGAGGCAAG  49

seq1  GAGTTCACAAAGCA-CATGCTGGCCTTGAA-CTTGCTCTGC-ACAA-GAT  89
      |||||||||||||| ||||||||||||||| |||||||||| |||| |||
seq2  GAGTTCACAAAGCACCATGCTGGCCTTGAACCTTGCTCTGCAACAAGGAT  99

seq1  GATGACCTTGAACTCAC-TTAAGCTCCCTGCCTCTAGCTCCCAGGTCCCG  138
      ||||||| ||||||||| ||||||||||||||||||||| ||||||||||
seq2  GATGACCCTGAACTCACTTTAAGCTCCCTGCCTCTAGCT-CCAGGTCCCG  148

seq1  GG-ATTCCAGATCTGT-ATCAT---GCCTGGCTTCCATACACAATGAGGC  183
      || ||||||||||||| |||||    | ||||||||||||||||||||||
seq2  GGAATTCCAGATCTGTAATCATTGCACTTGGCTTCCATACACAATGAGGC  198

seq1  TAGAATACTTACAGTTTAACCTATTT-GAAGCAGGGTTTCTCTGTG-AAA  231
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TAGAATACTTACAGTTTAACCTATTTGGAAGCAGGGTTTCTCTGTGAAAA  248

seq1  CCCTGGCTTTCCTGGAACTCACTCTGTAGTCCAGGTTGTCCTCAAAGGCA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTTCCTGGAACTCACTCTGTAGTCCAGGTTGTCCTCAAAGGCA  298

seq1  GAGATCCTCCTGCCTTTGCCTCCCAAGCTCTAGCTTTAAAGGCGTGTGCT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTCCTGCCTTTGCCTCCCAAGCTCTAGCTTTAAAGGCGTGTGCT  348

seq1  GCCACCACCCTGCTTAAACTCTTGATTTAATTATAGATCACGAAAATATG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCCTGCTTAAACTCTTGATTTAATTATAGATCACGAAAATATG  398

seq1  TATGACACATATGACTTAGTATTAATCACAATCTATTCTCAACTCTATTT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACATATGACTTAGTATTAATCACAATCTATTCTCAACTCTATTT  448

seq1  AACATAAAGATGGTGGGATATAGATTGTGGAAGGAAGGACACTGCTTAGA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGATGGTGGGATATAGATTGTGGAAGGAAGGACACTGCTTAGA  498

seq1  GGAAAACTGCCACACAACAGCATGTACATCACTTGACCTAGTAAGCACCC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGCCACACAACAGCATGTACATCACTTGACCTAGTAAGCACCC  548

seq1  AGTTCTGCTCTCTACAGTACAATATTTTCTGCCCTGACCCTAGCAGTGTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCTCTCTACAGTACAATATTTTCTGCCCTGACCCTAGCAGTGTT  598

seq1  GGAATGTCCAATCACTAATAATTATTTGTAAACTGCTGCAATTATTTTTC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCCAATCACTAATAATTATTTGTAAACTGCTGCAATTATTTTTC  648

seq1  TTCCAAATTAAGAGTGACATTGTAAGTTTGGAATGAATATCCAGATAAAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTAAGAGTGACATTGTAAGTTTGGAATGAATATCCAGATAAAG  698

seq1  AAAATATAAATATGGTTTGGCAGGCACTAGACTTTCATAGGGACTCTGTG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATATGGTTTGGCAGGCACTAGACTTTCATAGGGACTCTGTG  748

seq1  CTGGAGTCCGAATATGGGCCATGAGCTCTAGGTGGAATTACACTAAAGTC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCGAATATGGGCCATGAGCTCTAGGTGGAATTACACTAAAGTC  798

seq1  CTGATGCACAATGAGTCTCATACTTAACCCCCACAGTATGCCCAGCTCCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCACAATGAGTCTCATACTTAACCCCCACAGTATGCCCAGCTCCT  848

seq1  TTATCCCACCCCAAGTTAGGTAGCGTTACTTTTGTGTGAATCACTGGGAG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCACCCCAAGTTAGGTAGCGTTACTTTTGTGTGAATCACTGGGAG  898

seq1  TAAGTCCAGCCTGATGGTGTATGGGATGCGGCTTCAAGTCTGACAATTTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAGCCTGATGGTGTATGGGATGCGGCTTCAAGTCTGACAATTTT  948

seq1  CCTCCCCTAATGATTTTAACTAGCACTCCTCCCAGTCTTTGGACATGGCC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTAATGATTTTAACTAGCACTCCTCCCAGTCTTTGGACATGGCC  998

seq1  CAGGCTAGTAAAACTATTTCAGGTAAGAAAAGGACTGTTAAAGAATTC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTAAAACTATTTCAGGTAAGAAAAGGACTGTTAAAGAATTC  1046


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