BAC Information

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BAC

Clone NameB6Ng01-204H19
Chromosome12 (Build37)
Map Location 112,253,242 - 112,405,486
singlet/doubletdoublet
Overlap geneRcor1, 4930595D18Rik, Traf3
Upstream geneLOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik
Downstream geneAmn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204H19.bB6Ng01-204H19.g
ACCGA024422GA024423
length324405
definitionB6Ng01-204H19.b B6Ng01-204H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,405,165 - 112,405,486)(112,253,242 - 112,253,648)
sequence
gaattctctctaaaggtctaatcctgatacccgggtccctaaccggtggt
gatgacagtgtagaaacgtggcgaaacgtacatgagccatagccttggcg
cctccaaaacctgcaagccccgcggctaggatcgttttaatggctcgccc
gtggggagcccactctgacctttggtgttaatcgaaggtggaaggtgtgc
attcggccccagctggatcccataaccgcctgccttccagcctctctgca
gctctccgactatgaatcagtcattcatctgcagagcaatgactcagtat
aaactttttaaataatggctcaaa
caggatcagccaggactatacagagaaaccctgtctcaaaaaaccaaaaa
aaaaaacaaccaaaaaacaaaaaacttaaaatgaacaagaaatacacaca
cacacatatgtatatgtgtatatatatattgttgttgggattcctgaaga
gctgaggagcaagacagaaagcctagtgtgtgtgtgtgtggggggaggca
ttgctctcattctaggccatctgcttgtcatgtgtgtgttctggcatttc
ttggaacaaacacacacacatatacacacaaatatatatatatatatata
tatatatatatatatatatatatatatatatgtatatatatatatatata
tatatgtatatatatatatatatatatatatataaatatatatatgtata
taata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112405165_112405486
seq2: B6Ng01-204H19.b_34_357 (reverse)

seq1  TTTGAGCCATTATTT-AAAAGTTTATACTGAGTCATTGCTCTGCAGATGA  49
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCATTATTTAAAAAGTTTATACTGAGTCATTGCTCTGCAGATGA  50

seq1  ATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGT  100

seq1  TCTGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACAC  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACAC  150

seq1  CAAAGGTCAGAGTGGGCTCCCCACGGGCGAGCCATTAAAACGATCCTTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAAGGTCAGAGTGGGCTCCCCACGGGCGAGCCATTAAAACGATCCTAGC  200

seq1  CGCGGGGCTTGCAGGTTTTGGAGGCGCC-AGGCTATGGCTCATGTACGTT  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGCGGGGCTTGCAGGTTTTGGAGGCGCCAAGGCTATGGCTCATGTACGTT  250

seq1  TCGCCACGTTTCTACACTGTCATCACCACCGGTTGGGGACCCGGGTATCA  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCGCCACGTTTCTACACTGTCATCACCACCGGTTAGGGACCCGGGTATCA  300

seq1  GGATTAGACCTTTAGAGAGAATTC  322
      ||||||||||||||||||||||||
seq2  GGATTAGACCTTTAGAGAGAATTC  324

seq1: chr12_112253242_112253648
seq2: B6Ng01-204H19.g_67_477

seq1  GAATTCCAGGATCAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATCAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAAC  50

seq1  CAAAAAAAAAAACAACCAAAAAACAAAAAACTTAAAATGAACAAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAACAACCAAAAAACAAAAAACTTAAAATGAACAAGAAATA  100

seq1  CACACACACACATATGTATATGTGTATATATATATTGTTGTTGGGATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATATGTATATGTGTATATATATATTGTTGTTGGGATTCC  150

seq1  TGAAGAGCTGAGGAGCAAGACAGAAAGCCTAGTGTGTGTGTGTGTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCTGAGGAGCAAGACAGAAAGCCTAGTGTGTGTGTGTGTGGGGG  200

seq1  GAGGCATTGCTCTCATTCTAGGCCATCTGCTTGTCATGTGTGTGTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTGCTCTCATTCTAGGCCATCTGCTTGTCATGTGTGTGTTCTGG  250

seq1  CATTTCTTGGAACAAACACACACACATATACACACAAATATATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTGGAACAAACACACACACATATACACACAAATATATATATATA  300

seq1  TATATATATATATATATATATATATATATATATGTATATATATATATA--  348
      ||||||||||||||||||||||||||||||||| ||| ||||||||||  
seq2  TATATATATATATATATATATATATATATATATATATGTATATATATATA  350

seq1  -AAACACATATTTATAT-TATATACTTATATACATATATAATATAT-TTT  395
       | | | |||| ||||| ||||||  |||||| |||||||| |||| | |
seq2  TATATATATATGTATATATATATATATATATATATATATAA-ATATATAT  399

seq1  ATGTATATAATA  407
      ||||||||||||
seq2  ATGTATATAATA  411