BAC Information

Click to search

BAC

Clone NameB6Ng01-204K17
Chromosome12 (Build37)
Map Location 66,926,522 - 67,034,531
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K17.bB6Ng01-204K17.g
ACCGA024550GA024551
length596782
definitionB6Ng01-204K17.b B6Ng01-204K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,033,936 - 67,034,531)(66,926,522 - 66,927,304)
sequence
gaattccatgaaataaaaagtaaaattaattttctgagtctgaatttata
aatttagaaaacaacatccataatatgaaaaggtgaaggctttattttca
tactgtaagaccttctacattcaacctataggtttaattggtttagggct
acaattccaacagtgtatagtgtgtgaacacaggaaatgaaatgtaattt
tcacagtacatcaaaagtttcagttggaataaaaatatcctattttcatt
ttggaaatacattgatagactcaagtgagaagtgtgtatttcatgaacct
attatgaaagctgttatgatattgattccatactacacacacacacacac
acacacacacacacacacacacacacacacgcgcgcgcgcgcgcgcgcgc
gtgtgggtgtgtataaccccaattaaaacagtaggttggagctggggatg
gaagtgctggtgtcaaagagagagcagagcacagcaagagcgtcagagga
ggctaattatgggatggatccctggacaactttatatgtcccagtacagg
ggaacgccagggccaaaaaatgggaatgggtgggtaggggagtcgg

gaattcagtttgggaagagagtccatggattgtggctcccatgttctagg
tacatcctcccagataatttaaacctttctggaaacactcttctggacat
atccagaggtgggtttccatggggattctccatgttggacaatgaacact
aactttcctggaattccattggcaaaattatgagcctatgtgagtgaaga
agatttttacttgtatgtgtgggttaaagggcagagccttgttatgtaaa
tacatttcacagttatcatttctaaagttaggtgtgctacatttaaacta
aatatgctcgatgtaatttcttccttggtaattagcatagatgctcaggt
gtattcaaattggacaactgagggcgatttcacacttttctttaaccaat
tccaagttctgtaggcatttacatttactgtaagtgatgtctgaagtgta
tccttctccctcatccacaattccattgctgagacttaggccccttttgc
tacttacttactgcaatggcctcttagtcctattcttctgagttcacctt
tccacattgattattatcataatgcacgcttatacagtacacacattgtt
gggtcattatcatgactgaattcttaccctttgactcagtgtagcaagac
ttctccttgaactctcatctgactgctcttcagctgaactaattttaaca
attggacagccctccacctcttatagctgtcactaaaactggatctgcat
gtatacaatatgaggcttcaagctcttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67033936_67034531
seq2: B6Ng01-204K17.b_45_640 (reverse)

seq1  CCGACTCCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTG  50

seq1  TACTGGGACATATAAAGTTGTCCAGGGATCCATCCCATAATTAGCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGACATATAAAGTTGTCCAGGGATCCATCCCATAATTAGCCTCCT  100

seq1  CTGACGCTCTTGCTGTGCTCTGCTCTCTCTTTGACACCAGCACTTCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGCTCTTGCTGTGCTCTGCTCTCTCTTTGACACCAGCACTTCCATC  150

seq1  CCCAGCTCCAACCTACTGTTTTAATTGGGGTTATACACACCCACACGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCAACCTACTGTTTTAATTGGGGTTATACACACCCACACGCGC  200

seq1  GCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTGTGTGTGTAGTATGGAATCAATATCATAACAGCTTTCATAATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTAGTATGGAATCAATATCATAACAGCTTTCATAATAGGT  300

seq1  TCATGAAATACACACTTCTCACTTGAGTCTATCAATGTATTTCCAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATACACACTTCTCACTTGAGTCTATCAATGTATTTCCAAAATG  350

seq1  AAAATAGGATATTTTTATTCCAACTGAAACTTTTGATGTACTGTGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGATATTTTTATTCCAACTGAAACTTTTGATGTACTGTGAAAAT  400

seq1  TACATTTCATTTCCTGTGTTCACACACTATACACTGTTGGAATTGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCATTTCCTGTGTTCACACACTATACACTGTTGGAATTGTAGCC  450

seq1  CTAAACCAATTAAACCTATAGGTTGAATGTAGAAGGTCTTACAGTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAATTAAACCTATAGGTTGAATGTAGAAGGTCTTACAGTATGAA  500

seq1  AATAAAGCCTTCACCTTTTCATATTATGGATGTTGTTTTCTAAATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCTTCACCTTTTCATATTATGGATGTTGTTTTCTAAATTTATA  550

seq1  AATTCAGACTCAGAAAATTAATTTTACTTTTTATTTCATGGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACTCAGAAAATTAATTTTACTTTTTATTTCATGGAATTC  596


seq1: chr12_66926522_66927304
seq2: B6Ng01-204K17.g_66_847

seq1  GAATTCAGTTTGGGAAGAGAGTCCATGGATTGTGGCTCCCATGTTCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGGGAAGAGAGTCCATGGATTGTGGCTCCCATGTTCTAGG  50

seq1  TACATCCTCCCAGATAATTTAAACCTTTCTGGAAACACTCTTCTGGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTCCCAGATAATTTAAACCTTTCTGGAAACACTCTTCTGGACAT  100

seq1  ATCCAGAGGTGGGTTTCCATGGGGATTCTCCATGTTGGACAATGAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGGTGGGTTTCCATGGGGATTCTCCATGTTGGACAATGAACACT  150

seq1  AACTTTCCTGGAATTCCATTGGCAAAATTATGAGCCTATGTGAGTGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTGGAATTCCATTGGCAAAATTATGAGCCTATGTGAGTGAAGA  200

seq1  AGATTTTTACTTGTATGTGTGGGTTAAAGGGCAGAGCCTTGTTATGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTACTTGTATGTGTGGGTTAAAGGGCAGAGCCTTGTTATGTAAA  250

seq1  TACATTTCACAGTTATCATTTCTAAAGTTAGGTGTGCTACATTTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCACAGTTATCATTTCTAAAGTTAGGTGTGCTACATTTAAACTA  300

seq1  AATATGCTCGATGTAATTTCTTCCTTGGTAATTAGCATAGATGCTCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTCGATGTAATTTCTTCCTTGGTAATTAGCATAGATGCTCAGGT  350

seq1  GTATTCAAATTGGACAACTGAGGGCGATTTCACACTTTTCTTTAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAATTGGACAACTGAGGGCGATTTCACACTTTTCTTTAACCAAT  400

seq1  TCCAAGTTCTGTAGGCATTTACATTTACTGTAAGTGATGTCTGAAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTCTGTAGGCATTTACATTTACTGTAAGTGATGTCTGAAGTGTA  450

seq1  TCCTTCTCCCTCATCCACAATTCCATTGCTGAGACTTAGGCCCCTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCCTCATCCACAATTCCATTGCTGAGACTTAGGCCCCTTTTGC  500

seq1  TACTTACTTACTGCAATGGCCTCTTAGTCCTATTCTTCTGAGTTCACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTACTGCAATGGCCTCTTAGTCCTATTCTTCTGAGTTCACCTT  550

seq1  T-CACATTGATTATTATCATAATGCACGC-TATACAGTACACACA-TGTT  597
      | ||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TCCACATTGATTATTATCATAATGCACGCTTATACAGTACACACATTGTT  600

seq1  GGGTCATTATCATGACTGAATTCTTACACTTTGAACTCAGTGTAGC-AGA  646
      ||||||||||||||||||||||||||| ||||| |||||||||||| |||
seq2  GGGTCATTATCATGACTGAATTCTTACCCTTTG-ACTCAGTGTAGCAAGA  649

seq1  CTTCTCCTTGTACTCTCATCCTTAACTGTCTTCTTCAGCTGTACTAATTT  696
      |||||||||| |||||||||  | ||||   |||||||||| ||||| ||
seq2  CTTCTCCTTGAACTCTCATC--TGACTG--CTCTTCAGCTGAACTAA-TT  694

seq1  TTACCAATTTTGGGACAG-CCTC--ACTC-TATAGCTGTCACTAACACTG  742
      ||| |||||   |||||| ||||   ||| ||||||||||||||| ||||
seq2  TTAACAATT---GGACAGCCCTCCACCTCTTATAGCTGTCACTAAAACTG  741

seq1  AGTCTGGCATGTATTACA--ATGAGGCTTCAAGCTCTTCTTTT  783
        ||| ||||||| ||||  |||||||||||||||||||||||
seq2  GATCT-GCATGTA-TACAATATGAGGCTTCAAGCTCTTCTTTT  782


| Home | SequenceCutter | Blast | Download |