BAC Information

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BAC

Clone NameB6Ng01-205G08
Chromosome12 (Build37)
Map Location 53,930,305 - 54,099,434
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneEG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205G08.bB6Ng01-205G08.g
ACCGA025086GA025087
length1,117820
definitionB6Ng01-205G08.b B6Ng01-205G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,098,327 - 54,099,434)(53,930,305 - 53,931,117)
sequence
gaattctcatcatatgcagatatcttatattagaataacaatggaccaag
cttagagcctgagacagttaacaatgttaatagtgaaggcagctcctgta
tgcctgtgatctagagttctcccttatcgattataatttcattaggtgcc
tcatgctggctagatttaaaccaacttagcatgtactagaggcatttgga
aagagagaaccttattgagaaaatgctcccatcctattggcttatgggca
agcctgtggtacattttcttggttggtgaattacagtagtcataaggcat
caaagggcccagctcactgtggatgaaccacctctgagctgtaaaagcag
tttctgcctccaattgtacctttagtgagttccagtcccaattaaccaga
gatggactgttgtctggaagtctttcctcccagaattgttttaggttgtg
gagcaatagaaactcaaagacacgtctctcaggagccactctatgatctc
atttatggtcctgagggaccctttgttgccctgtgactactgtaaaagac
accctgaccctcagttaaagaaacccatgccttacatgcagatgtacacc
catgccttacatgccttttgggcatgtctgctttcttctaagggtctctc
ttaattcttatgcttaacctagatagaagatctttagcaactagtaactt
ccccaaaagtttatttttcttctcacttcataccatactggactttgtta
accacattcccaccaaattcagatccacctctcagctagatctgcgttct
ctgagccaccccccaccgcacccccatttctgggctctccctgtttctat
ctgaagtcaatttcctccacttacattgctagaattctcttaactgatct
aaagagttgatcatgaaaagcacctttttcttctgccacttatgttctct
tcctctgttgctcttacactagcccatccatctccccagttatgggtttt
ctctcaagtgcaaggatggggtccacactgaatcgtcttcctgcctctag
ccccattttgtctttcttcactacagggaaccatattacatttattaatc
ctacctctgctgactcc
gaattcttctcgctaataaaatcacgaacgggaagacatcatatgcaacc
ctcttgccaaaaccacacaccaccgtatatcaatcattctgagaagggtg
gggagagaggaatgaagaaaaagaagcctaaccacaagcaagcctccaga
tctgccagttttcaggagaggggattgtgctaaacaattcgagtacagta
agcaaaaaaaaaaaaaaaaaaaaaaaaaaaatggagtctgggaaactttg
cagggcatacaagcctgttccttcagcagaactccaggaaagagaattca
gggatagagcaaatgtgacaatagaggtaagaagaaacgcattaccactc
agtggctgtacccctttttgggtaatgattaaaaatataaggcataagaa
cacgacagttgagagagtgcaggcagtaatttatattttaacactaagga
gttaactttaaatggaatctacagtggcattgtggttatagttacaaagc
aggcagggctcttgtgttttagctgtctgtactgcaatcccactgtgtac
ccgctttgcttaccagaaggcttaattataattgggggaactcagataaa
gtgggactggctgaagaccccatctgatttgctcagtgatggattcatgg
aaagcttatgattctttcttaccctgctttttatatctttgacattttcc
agattgaaaacttttttttttaaaaatagcattcatataaagacttctca
caacctgtaacaaaaaacgtttatcgttcacatagacaggaagtgttatt
tgcagaggtgatcattggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54098327_54099434
seq2: B6Ng01-205G08.b_46_1162 (reverse)

seq1  GGAGGCAGCAGAGATAG--ATAATAAATGTAATTGTGGTTCCCTGTAGTG  48
      |||| |||||||| |||   |||||||||||| | |||||||||||||||
seq2  GGAGTCAGCAGAGGTAGGATTAATAAATGTAA-TATGGTTCCCTGTAGTG  49

seq1  AAGGAAGACAAAATGGGGCTAGAGCCA-GAAGACCGATCAGTGTTGACAC  97
      ||| |||||||||||||||||||| || ||||||   ||||||| ||| |
seq2  AAGAAAGACAAAATGGGGCTAGAGGCAGGAAGACGATTCAGTGTGGACCC  99

seq1  CATCCTGGCACCTGAGAG-AAACCCAATACTGGGGAGATGGATGGGCTAG  146
      |||||| |||| |||||| |||||||  ||||||||||||||||||||||
seq2  CATCCTTGCACTTGAGAGAAAACCCATAACTGGGGAGATGGATGGGCTAG  149

seq1  TGTAAAGAGC-ACAGAGGGTAGAGAACAT-AGT-GCAGGAG-AAAAGGTG  192
      ||| |||||| ||||| || ||||||||| ||| |||| || ||||||||
seq2  TGT-AAGAGCAACAGA-GGAAGAGAACATAAGTGGCAGAAGAAAAAGGTG  197

seq1  CTTTTCATGATCAACTCTTT-GGTCAGTTAAGAGAATTCTAGC-ATGTAA  240
      |||||||||||||||||||| | |||||||||||||||||||| ||||||
seq2  CTTTTCATGATCAACTCTTTAGATCAGTTAAGAGAATTCTAGCAATGTAA  247

seq1  GTGGAGG-AATTGACTTCAGATAGAAACAGGGAGAGCCCAGAAATGGGGG  289
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAATTGACTTCAGATAGAAACAGGGAGAGCCCAGAAATGGGGG  297

seq1  TGCGGTGGGGGGTGGCTCAGAGAACGCAGATCTAGCTGAGAGGTGGATCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTGGGGGGTGGCTCAGAGAACGCAGATCTAGCTGAGAGGTGGATCT  347

seq1  GAATTTGGTGGGAATGTGGTTAACAAAGTCCAGTATGGTATGAAGTGAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGTGGGAATGTGGTTAACAAAGTCCAGTATGGTATGAAGTGAGA  397

seq1  AG-AAAATAAACTTTTGGGGAAGTTACTAGTTGCTAAAGATCTTCTATCT  438
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAACTTTTGGGGAAGTTACTAGTTGCTAAAGATCTTCTATCT  447

seq1  AGGTTAAGCATAAGAATTAAGAGAGACCCTTAGAAGAAAGCAGACATGCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGCATAAGAATTAAGAGAGACCCTTAGAAGAAAGCAGACATGCC  497

seq1  CAAAAGGCATGTAAGGCATGGGTGTACATCTGCATGTAAGGCATGGGTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCATGTAAGGCATGGGTGTACATCTGCATGTAAGGCATGGGTTT  547

seq1  CTTTAACTGAGGGTCAGGGTGTCTTTTACAGTAGTCACAGGGCAACAAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTGAGGGTCAGGGTGTCTTTTACAGTAGTCACAGGGCAACAAAG  597

seq1  GGTCCCTCAGGACCATAAATGAGATCATAGAGTGGCTCCTGAGAGACGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCAGGACCATAAATGAGATCATAGAGTGGCTCCTGAGAGACGTG  647

seq1  TCTTTGAGTTTCTATTGCTCCACAACCTAAAACAATTCTGGGAGGAAAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTTTCTATTGCTCCACAACCTAAAACAATTCTGGGAGGAAAGA  697

seq1  CTTCCAGACAACAGTCCATCTCTGGTTAATTGGGACTGGAACTCACTAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACAACAGTCCATCTCTGGTTAATTGGGACTGGAACTCACTAAA  747

seq1  GGTACAATTGGAGGCAGAAACTGCTTTTACAGCTCAGAGGTGGTTCATCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAATTGGAGGCAGAAACTGCTTTTACAGCTCAGAGGTGGTTCATCC  797

seq1  ACAGTGAGCTGGGCCCTTTGATGCCTTATGACTACTGTAATTCACCAACC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGCTGGGCCCTTTGATGCCTTATGACTACTGTAATTCACCAACC  847

seq1  AAGAAAATGTACCACAGGCTTGCCCATAAGCCAATAGGATGGGAGCATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTACCACAGGCTTGCCCATAAGCCAATAGGATGGGAGCATTT  897

seq1  TCTCAATAAGGTTCTCTCTTTCCAAATGCCTCTAGTACATGCTAAGTTGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAAGGTTCTCTCTTTCCAAATGCCTCTAGTACATGCTAAGTTGG  947

seq1  TTTAAATCTAGCCAGCATGAGGCACCTAATGAAATTATAATCGATAAGGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTAGCCAGCATGAGGCACCTAATGAAATTATAATCGATAAGGG  997

seq1  AGAACTCTAGATCACAGGCATACAGGAGCTGCCTTCACTATTAACATTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTAGATCACAGGCATACAGGAGCTGCCTTCACTATTAACATTGT  1047

seq1  TAACTGTCTCAGGCTCTAAGCTTGGTCCATTGTTATTCTAATATAAGATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCTCAGGCTCTAAGCTTGGTCCATTGTTATTCTAATATAAGATA  1097

seq1  TCTGCATATGATGAGAATTC  1108
      ||||||||||||||||||||
seq2  TCTGCATATGATGAGAATTC  1117

seq1: chr12_53930305_53931117
seq2: B6Ng01-205G08.g_69_887

seq1  GAATTCTTCTCGCTAATAAAATCACGAACGGGAAGACATCATATGCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCGCTAATAAAATCACGAACGGGAAGACATCATATGCAACC  50

seq1  CTCTTGCCAAAACCACACACCACCGTATATCAATCATTCTGAGAAGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCAAAACCACACACCACCGTATATCAATCATTCTGAGAAGGGTG  100

seq1  GGGAGAGAGGAATGAAGAAAAAGAAGCCTAACCACAAGCAAGCCTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGGAATGAAGAAAAAGAAGCCTAACCACAAGCAAGCCTCCAGA  150

seq1  TCTGCCAGTTTTCAGGAGAGGGGATTGTGCTAAACAATTCGAGTACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGTTTTCAGGAGAGGGGATTGTGCTAAACAATTCGAGTACAGTA  200

seq1  AGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAGTCTGGGAAACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAGTCTGGGAAACTTTG  250

seq1  CAGGGCATACAAGCCTGTTCCTTCAGCAGAACTCCAGGAAAGAGAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATACAAGCCTGTTCCTTCAGCAGAACTCCAGGAAAGAGAATTCA  300

seq1  GGGATAGAGCAAATGTGACAATAGAGGTAAGAAGAAACGCATTACCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGAGCAAATGTGACAATAGAGGTAAGAAGAAACGCATTACCACTC  350

seq1  AGTGGCTGTACCCCTTTTTGGGTAATGATTAAAAATATAAGGCATAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTACCCCTTTTTGGGTAATGATTAAAAATATAAGGCATAAGAA  400

seq1  CACGACAGTTGAGAGAGTGCAGGCAGTAATTTATATTTTAACACTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACAGTTGAGAGAGTGCAGGCAGTAATTTATATTTTAACACTAAGGA  450

seq1  GTTAACTTTAAATGGAATCTACAGTGGCATTGTGGTTATAGTTACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTTAAATGGAATCTACAGTGGCATTGTGGTTATAGTTACAAAGC  500

seq1  AGGCAGGGCTCTTGTGTTTTAGCTGTCTGTACTGCAATCCCACTGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCTCTTGTGTTTTAGCTGTCTGTACTGCAATCCCACTGTGTAC  550

seq1  CCGCTTTGCTTACCAGAAGGCTTAATTATAATTGGGGGAACTCAGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTTGCTTACCAGAAGGCTTAATTATAATTGGGGGAACTCAGATAAA  600

seq1  GTGGGACTGGCTGAAGACCCCATCTGATTTGCTCAGTGATGGATTCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACTGGCTGAAGACCCCATCTGATTTGCTCAGTGATGGATTCATGG  650

seq1  -AAGCTTATGATTCTTTCTTACCCTGC-TTTTATATCTTTGACATTTTCC  698
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGCTTATGATTCTTTCTTACCCTGCTTTTTATATCTTTGACATTTTCC  700

seq1  AGAATGAAAAC-TTTTTTTTTAAAAATAGCATTCATAT-AAGACTTCTCA  746
      ||| ||||||| |||||||||||||||||||||||||| |||||||||||
seq2  AGATTGAAAACTTTTTTTTTTAAAAATAGCATTCATATAAAGACTTCTCA  750

seq1  CAAACCTGTAAC-AAAAACG-TTATCGTCCACATAGACAGGAAGTGTTA-  793
      | |||||||||| ||||||| ||||||| |||||||||||||||||||| 
seq2  C-AACCTGTAACAAAAAACGTTTATCGTTCACATAGACAGGAAGTGTTAT  799

seq1  TTGCAGAGGTGATCATTGGC  813
      ||||||||||||||||||||
seq2  TTGCAGAGGTGATCATTGGC  819