BAC Information

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BAC

Clone NameB6Ng01-205N03
Chromosome12 (Build37)
Map Location 41,497,389 - 41,672,165
singlet/doubletdoublet
Overlap geneDock4, LOC638487
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205N03.bB6Ng01-205N03.g
ACCGA025397GA025398
length1,141900
definitionB6Ng01-205N03.b B6Ng01-205N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,671,020 - 41,672,165)(41,497,389 - 41,498,269)
sequence
gaattcttttttaagtgattgttttctttcaaggaatctttccagctaaa
actcagaatgacttaccatgccaacaaaaaatacaaactgtgatctgtgt
gtagtgggtgtgagaagacagaggggaacgagggtgattaaaatacattg
tagatgtacatgaaagtctcaaaaattaataaaaatatcatggaaaaaac
aaaacaaacatcatgatagttggtcctaattgtgagagctctgaatatca
aagcttacttctaaactggtctgtgaggtcttttctagaggtgattaaca
aagaggaagagctgatctggatgcaacagcaccatcatcccacgggctgt
gggtccaggaggcgtaaaacaaaggggcagcccacaagcacggtggactg
ttcccaggcttccacagggaacgattctggctctaccagaatgtgcttcc
tctcacaagtccagaaacaacggagctagtcgattatagcctgcagcctc
tgaaactctggctccttcttctctttaaactacttctcccaggcatgtcg
atgaaaagtcaacacagcctccaccctctgctgactgtatttttacgctc
tctgctgacatcggacagattatctaacttagtcctatgttgacatgctg
tcatctcaacccattatcctagctggcgaagagcacccgacatgtagata
ctagggcttcttcttgagtgaggtctcttcagatcacctataacaagagt
cgtctgagatcctagttgaaatttcatgttcgagtccctccacagttaga
tattctaatgcagaagctaatgcagaggttctgggatttacttctaaaaa
ccatgagtataaaccaaacatgattatattttcaccactcctagcctgct
tctccccttggggtatccaagcgcattgtgcactgggctcagctggaagg
agcgaagcttagctgccttggtgggttaagacgattttggatggtgaagc
agagaagcagccttctctggagatgatttcagtgaacagcttctctaata
ttgggggaaacaaagcttatacaaaccttggaagcgtccttaagtacgtt
aatgattgaaagctgagggtgctggatgctacatttgcatg
gaattccagggcagtctgagagacacagcaaaaccctgtaggaaacaaac
aagcaaggtgctattagatatcccagcagaaatgcaaaagaaaaagtagg
tggaccaaatggcggggaagccatggctgagatctgaggccgggggatgg
aatgagagctctttagaagaaaacatatgcactgaaaacacaaaatgcct
aggactgaggctggggcatgccataattctgaggtcaggcagtaagccaa
ggcagagaagccactgaagcaaggtgacagccaggggcctgacaccctgg
gaagaaaatacttcaaggaagaaaatctagaactgtggtgctctcggtac
cagtgaccttgacaagtgctgtttccctgcagtgggggagacaaaagtcc
aagatgagggtgaatttatgagcggatcctggtgaaagaatgaaaacagt
aattacagacagatgaaggatttttctataaacaggagccaaaaaatatt
gctgcctctggaagcagtcaggaggctgaggacttgttttaaaatgcgga
gtagtctaatgggcatgtagacttaataggagagtccacagttaaggaaa
acagctaattaaaagaacagtgtgcatgggttagaaagcagacgtgggtc
cattattgctgagtgagttgtaacaaacagtcctgacctctcgatgtcta
caacaaacttactcccaaaactcagtccaccatgaaagtgtactatttga
acttcaatgcacactgtttttgtatgaagatttcccctaagatgaaggaa
agctgaccacacttcgaatcttgttcaattgaaccccgaggagagcactg
ggcagcttgttccacagtcagaagaagaaatggcagaattaaagccattg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41671020_41672165
seq2: B6Ng01-205N03.b_42_1182 (reverse)

seq1  CATGCAAATGAAGCATTCCCAGCA-CCTCAGC-TTCAACCAATAACGTAC  48
      |||||||||| |||||  |||||| ||||||| ||||| || ||||||| 
seq2  CATGCAAATGTAGCAT--CCAGCACCCTCAGCTTTCAATCATTAACGTA-  47

seq1  CTTTAAGACGCTTCCCAAGGTTTGTATAGCCTTTGTTTCCCCCAATA-TA  97
      ||| | ||||||| ||||||||||||||  ||||||||||||||||| ||
seq2  CTTAAGGACGCTT-CCAAGGTTTGTATAAGCTTTGTTTCCCCCAATATTA  96

seq1  GAG-AGCTGTTTCACTGAAAACCATCTCCAGAGAAGGCTGCTTCTCCTGC  146
      ||| ||||| ||||||| ||| ||||||||||||||||||||||| ||||
seq2  GAGAAGCTG-TTCACTG-AAATCATCTCCAGAGAAGGCTGCTTCT-CTGC  143

seq1  CTTCCACCATCCAAAATCGTCTTAACCCACCAAGGCAGCTAAGCTTCGCT  196
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TTCACCATCCAAAATCGTCTTAACCCACCAAGGCAGCTAAGCTTCGCT  191

seq1  CCCTCCAGCTGAGCCCAGTGCACAATGCGCTTGGATACCCCAAGGGGAGA  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCTGAGCCCAGTGCACAATGCGCTTGGATACCCCAAGGGGAGA  241

seq1  AGCAGGCTAGGAGTGGTGAAAATATAATCATGTTTGGTTTATACTCATGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTAGGAGTGGTGAAAATATAATCATGTTTGGTTTATACTCATGG  291

seq1  TTTTTAGAAGTAAATCCCAGAACCTCTGCATTAGCTTCTGCATTAGAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAGTAAATCCCAGAACCTCTGCATTAGCTTCTGCATTAGAATA  341

seq1  TCTAACTGTGGAGGGACTCGAACATGAAATTTCAACTAGGATCTCAGACG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGTGGAGGGACTCGAACATGAAATTTCAACTAGGATCTCAGACG  391

seq1  ACTCTTGTTATAGGTGATCTGAAGAGACCTCACTCAAGAAGAAGCCCTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTATAGGTGATCTGAAGAGACCTCACTCAAGAAGAAGCCCTAG  441

seq1  TATCTACATGTCGGGTGCTCTTCGCCAGCTAGGATAATGGGTTGAGATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACATGTCGGGTGCTCTTCGCCAGCTAGGATAATGGGTTGAGATGA  491

seq1  CAGCATGTCAACATAGGACTAAGTTAGATAATCTGTCCGATGTCAGCAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTCAACATAGGACTAAGTTAGATAATCTGTCCGATGTCAGCAGA  541

seq1  GAGCGTAAAAATACAGTCAGCAGAGGGTGGAGGCTGTGTTGACTTTTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTAAAAATACAGTCAGCAGAGGGTGGAGGCTGTGTTGACTTTTCAT  591

seq1  CGACATGCCTGGGAGAAGTAGTTTAAAGAGAAGAAGGAGCCAGAGTTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATGCCTGGGAGAAGTAGTTTAAAGAGAAGAAGGAGCCAGAGTTTCA  641

seq1  GAGGCTGCAGGCTATAATCGACTAGCTCCGTTGTTTCTGGACTTGTGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCAGGCTATAATCGACTAGCTCCGTTGTTTCTGGACTTGTGAGA  691

seq1  GGAAGCACATTCTGGTAGAGCCAGAATCGTTCCCTGTGGAAGCCTGGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACATTCTGGTAGAGCCAGAATCGTTCCCTGTGGAAGCCTGGGAA  741

seq1  CAGTCCACCGTGCTTGTGGGCTGCCCCTTTGTTTTACGCCTCCTGGACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCGTGCTTGTGGGCTGCCCCTTTGTTTTACGCCTCCTGGACCC  791

seq1  ACAGCCCGTGGGATGATGGTGCTGTTGCATCCAGATCAGCTCTTCCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCGTGGGATGATGGTGCTGTTGCATCCAGATCAGCTCTTCCTCTT  841

seq1  TGTTAATCACCTCTAGAAAAGACCTCACAGACCAGTTTAGAAGTAAGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATCACCTCTAGAAAAGACCTCACAGACCAGTTTAGAAGTAAGCTT  891

seq1  TGATATTCAGAGCTCTCACAATTAGGACCAACTATCATGATGTTTGTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAGAGCTCTCACAATTAGGACCAACTATCATGATGTTTGTTTT  941

seq1  GTTTTTTCCATGATATTTTTATTAATTTTTGAGACTTTCATGTACATCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCCATGATATTTTTATTAATTTTTGAGACTTTCATGTACATCTA  991

seq1  CAATGTATTTTAATCACCCTCGTTCCCCTCTGTCTTCTCACACCCACTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTTTAATCACCCTCGTTCCCCTCTGTCTTCTCACACCCACTAC  1041

seq1  ACACAGATCACAGTTTGTATTTTTTGTTGGCATGGTAAGTCATTCTGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATCACAGTTTGTATTTTTTGTTGGCATGGTAAGTCATTCTGAGT  1091

seq1  TTTAGCTGGAAAGATTCCTTGAAAGAAAACAATCACTTAAAAAAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGAAAGATTCCTTGAAAGAAAACAATCACTTAAAAAAGAATTC  1141

seq1: chr12_41497389_41498269
seq2: B6Ng01-205N03.g_70_961

seq1  GAATTCCAGGGCAGTCTGAGAGACACAGCAAAACCCTGTAGGAAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCAGTCTGAGAGACACAGCAAAACCCTGTAGGAAACAAAC  50

seq1  AAGCAAGGTGCTATTAGATATCCCAGCAGAAATGCAAAAGAAAAAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGTGCTATTAGATATCCCAGCAGAAATGCAAAAGAAAAAGTAGG  100

seq1  TGGACCAAATGGCGGGGAAGCCATGGCTGAGATCTGAGGCCGGGGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAATGGCGGGGAAGCCATGGCTGAGATCTGAGGCCGGGGGATGG  150

seq1  AATGAGAGCTCTTTAGAAGAAAACATATGCACTGAAAACACAAAATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGCTCTTTAGAAGAAAACATATGCACTGAAAACACAAAATGCCT  200

seq1  AGGACTGAGGCTGGGGCATGCCATAATTCTGAGGTCAGGCAGTAAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAGGCTGGGGCATGCCATAATTCTGAGGTCAGGCAGTAAGCCAA  250

seq1  GGCAGAGAAGCCACTGAAGCAAGGTGACAGCCAGGGGCCTGACACCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAAGCCACTGAAGCAAGGTGACAGCCAGGGGCCTGACACCCTGG  300

seq1  GAAGAAAATACTTCAAGGAAGAAAATCTAGAACTGTGGTGCTCTCGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATACTTCAAGGAAGAAAATCTAGAACTGTGGTGCTCTCGGTAC  350

seq1  CAGTGACCTTGACAAGTGCTGTTTCCCTGCAGTGGGGGAGACAAAAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTTGACAAGTGCTGTTTCCCTGCAGTGGGGGAGACAAAAGTCC  400

seq1  AAGATGAGGGTGAATTTATGAGCGGATCCTGGTGAAAGAATGAAAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGTGAATTTATGAGCGGATCCTGGTGAAAGAATGAAAACAGT  450

seq1  AATTACAGACAGATGAAGGATTTTTCTATAAACAGGAGCCAAAAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGACAGATGAAGGATTTTTCTATAAACAGGAGCCAAAAAATATT  500

seq1  GCTGCCTCTGGAAGCAGTCAGGAGGCTGAGGACTTGTTTTAAAATGCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTGGAAGCAGTCAGGAGGCTGAGGACTTGTTTTAAAATGCGGA  550

seq1  GTAGTCTAATGGGCATGTAGACTTAATAGGAGAGTCCACAGTTAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTAATGGGCATGTAGACTTAATAGGAGAGTCCACAGTTAAGGAAA  600

seq1  ACAGCTAATTAAAAGAACAGTGTGCATGGGTTAGAAAGCAGACGTGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAATTAAAAGAACAGTGTGCATGGGTTAGAAAGCAGACGTGGGTC  650

seq1  CATTATTGCTGAGTGAG-TGTAACAAACAGTCCTGACCCCTCGATGTCTA  699
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CATTATTGCTGAGTGAGTTGTAACAAACAGTCCTGACCTCTCGATGTCTA  700

seq1  CAACAAACTTACTCCCAAAACTCAGTCCACCATGAAAGTGTACTA-TTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAACAAACTTACTCCCAAAACTCAGTCCACCATGAAAGTGTACTATTTGA  750

seq1  AC-TCAATGCACACTG-TTTTGTATGAAGATTT-CCCTAAGATGAAGG-A  794
      || ||||||||||||| |||||||||||||||| |||||||||||||| |
seq2  ACTTCAATGCACACTGTTTTTGTATGAAGATTTCCCCTAAGATGAAGGAA  800

seq1  AGCTGACCACACTTCGAATCATG-TCAATTGAA-CCCGAGGAGAGCACT-  841
      |||||||||||||||||||| || ||||||||| ||||||||||||||| 
seq2  AGCTGACCACACTTCGAATCTTGTTCAATTGAACCCCGAGGAGAGCACTG  850

seq1  GGCAGCTTG-TCCACAGTCAGAAGAAG-AATGGCAGAGTTAA  881
      ||||||||| ||||||||||||||||| ||||||||| ||||
seq2  GGCAGCTTGTTCCACAGTCAGAAGAAGAAATGGCAGAATTAA  892