BAC Information

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BAC

Clone NameB6Ng01-206D03
Chromosome12 (Build37)
Map Location 34,662,273 - 34,783,632
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206D03.bB6Ng01-206D03.g
ACCGA025673GA025674
length1,1481,118
definitionB6Ng01-206D03.b B6Ng01-206D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,662,273 - 34,663,426)(34,782,502 - 34,783,632)
sequence
gaattcctattatcttgtgttgagattatttaaccttatgtattttaagc
tcgtggcaagttagggaaggagctatttcatcttgttatataatgaaaac
ttggtttgggaaggtttgagggatatcaatgttcacttataccattctgt
cagttctcaaacagtgcttttccagcctagaagtctgaaatgtgtaattg
gaaatctttaatttaattgaatctgattattcataggcaaaacaaacaaa
caaaaaaacaaaacaaaacaaaacaaaaaacaaaaaaaccccacaaccac
caacaacaaaaaacaaaaaaacaacaataaaaaaaaaaaaccaagaaaac
caaacatatgtgcaaaattacatggtttttttcaagactgtaacattgtc
tcttattcctgctctaatagttaattgttatatagggtagaaaatatata
ttgaattttaattaaaatattatttataatcattttactttaaaataagt
tatttgttatataagctatgataattaagctaaatttatatcagtatatc
ctcctgggttgaatttaaggctttatatctctttaatctgttatgtaaaa
ctgaaagtatttaaagtcttggaattataagcacacctttgtgcatactg
aacggcatcaccacaacgggagaagggcaatattgaaataattgcccttg
aactggtgttttctgaactgaagcatgactgctagtccttggatactgta
tcacgtcatttagagcactgctgtttccttttgtgtgaacaaagagaaaa
gtgacaattttgatatgcaccagttacagtgtaaccagaacactaaagat
aaattttggaagtcacaaataagctgtttttaacttaaataaaagaaaat
taccctttgtttgggggtgactgtcacctcaaaaacatttgttttaattt
taaaaggaactttgtttcaaagctaactgattattaaaaaaatgagcatg
ttagactgttgtacttagaaaatatcatttaaagcatagagttttatttt
attaaactagtagtttgcttgtttgtactagtattaaagaaaatactagt
aaataaaggccatttattcattataactagccagttgaagacttttat

gaattcttacatctggatctgttttatctttctgaaacgtttgtatgcaa
aagtggtctgttcggttagattttgtttttatctcttactaattctgatc
agtctcaatagctaatatttcggctacatcttcttggtcaaactacttaa
catagctttactgtgtattctcatgttggctccaaatttattaaaaatta
ctatttacttagtattatttcattacttagttattagattactaataatg
accaatattcataaatatttatcaagtggatgcttcaatcagatggtttt
agtacccataattctgaatgattgagtcaacaaattctctaaagaacaca
actcaattctgtggtccctccatacaaggttttaattttaggaaaacagc
cctaaatgctgtttgcttccttgccaatggagagagtcctgcccattgcc
gtctctgcagagctactgggtgaaaataaagagcccacattgtgcacaca
ctctgaagtcagccctgtccgtgcgagcatattcaaaatgaaacaaattg
gtgcaatttactgaaggttaaaccctcaaatgacattcacctaaaacatg
cgaggaaatggtttgagaggcttaaatgatcaatttaatttccttaattc
tcgagttgcttttacaagtaggtacaacttcatggcatctaactgaagac
tccagattgtgggtttatatgtgtttgtattctcatactcaacattctga
accacatatactttctatattacccgggacttgaaaacaagcccacagac
ctcagggcgctccagttgcagaagcggggcttttacgtttatttgtaatc
tgcctctagctttctctccctatccaacacagttctgtttatcagcattt
tctatctgaagtctcaggaaggttttttgaaagaactaattgtgcccatc
ttgcgtataagttctaacatgaagtggttttccgaaacgttttgttgcta
tgaaaaattatttctctctagtctgagaaagcagtgtatggaggaaagtt
tgtgtagagcatgtgcctcactccaagtctaactatctgtcgacgcgttc
aaggtattcagctaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34662273_34663426
seq2: B6Ng01-206D03.b_47_1194

seq1  GAATTCCTATTATCTTGTGTTGAGATTATTTAACCTTATGTATTTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTATCTTGTGTTGAGATTATTTAACCTTATGTATTTTAAGC  50

seq1  TCGTGGCAAGTTAGGGAAGGAGCTATTTCATCTTGTTATATAATGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCAAGTTAGGGAAGGAGCTATTTCATCTTGTTATATAATGAAAAC  100

seq1  TTGGTTTGGGAAGGTTTGAGGGATATCAATGTTCACTTATACCATTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGGGAAGGTTTGAGGGATATCAATGTTCACTTATACCATTCTGT  150

seq1  CAGTTCTCAAACAGTGCTTTTCCAGCCTAGAAGTCTGAAATGTGTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAAACAGTGCTTTTCCAGCCTAGAAGTCTGAAATGTGTAATTG  200

seq1  GAAATCTTTAATTTAATTGAATCTGATTATTCATAGGCAAAACAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTAATTTAATTGAATCTGATTATTCATAGGCAAAACAAACAAA  250

seq1  CAAAAAAACAAAACAAAACAAAACAAAAAACAAAAAAACCCCACAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAACAAAACAAAACAAAAAACAAAAAAACCCCACAACCAC  300

seq1  CAACAACAAAAAACAAAAAAACAACAATAAAAAAAAAAAACCAAGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAAAACAAAAAAACAACAATAAAAAAAAAAAACCAAGAAAAC  350

seq1  CAAACATATGTGCAAAATTACATGGTTTTTTTCAAGACTGTAACATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATATGTGCAAAATTACATGGTTTTTTTCAAGACTGTAACATTGTC  400

seq1  TCTTATTCCTGCTCTAATAGTTAATTGTTATATAGGGTAGAAAATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTGCTCTAATAGTTAATTGTTATATAGGGTAGAAAATATATA  450

seq1  TTGAATTTTAATTAAAATATTATTTATAATCATTTTACTTTAAAATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTAATTAAAATATTATTTATAATCATTTTACTTTAAAATAAGT  500

seq1  TATTTGTTATATAAGCTATGATAATTAAGCTAAATTTATATCAGTATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTATATAAGCTATGATAATTAAGCTAAATTTATATCAGTATATC  550

seq1  CTCCTGGGTTGAATTTAAGGCTTTATATCTCTTTAATCTGTTATGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGTTGAATTTAAGGCTTTATATCTCTTTAATCTGTTATGTAAAA  600

seq1  CTGAAAGTATTTAAAGTCTTGGAATTATAAGCACACCTTTGTGCATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTATTTAAAGTCTTGGAATTATAAGCACACCTTTGTGCATACTG  650

seq1  AACGGCATCACCACAACGGGAGAAGGGCAATATTGAAATAATTGCCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCATCACCACAACGGGAGAAGGGCAATATTGAAATAATTGCCCTTG  700

seq1  AACTGGTGTTTTCTGAACTGAAGCATGACTGCTAGTCCTTGGATACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGTTTTCTGAACTGAAGCATGACTGCTAGTCCTTGGATACTGTA  750

seq1  TCACGTCATTTAGAGCACTGCTGTTTCCTTTTGTGTGAACAAAGAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTCATTTAGAGCACTGCTGTTTCCTTTTGTGTGAACAAAGAGAAAA  800

seq1  GTGACAATTTTGATATGCACCAGTTACAGTGTAACCAGAACACTAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATTTTGATATGCACCAGTTACAGTGTAACCAGAACACTAAAGAT  850

seq1  AAATTTTGGAAGTCACAAATAAGCTGTTTTTAACTTAAATAAAAGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGAAGTCACAAATAAGCTGTTTTTAACTTAAATAAAAGAAAAT  900

seq1  TACCCTTTGTTTGGGGGTGACTGTCACCTCAAAAACATTTGTTTTAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTGTTTGGGGGTGACTGTCACCTCAAAAACATTTGTTTTAATTT  950

seq1  TAAAAGGAACTTTGTTTCAAAAGCTAACTGATTATTAAAAAAATGAGGCA  1000
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TAAAAGGAACTTTGTTTC-AAAGCTAACTGATTATTAAAAAAATGA-GCA  998

seq1  TGTTAGACTGTTGTACTTAAGAAATATCCATTTAAAGCATAGAGTTTTA-  1049
      |||||||||||||||||||  |||||| ||||||||||||||||||||| 
seq2  TGTTAGACTGTTGTACTTAGAAAATAT-CATTTAAAGCATAGAGTTTTAT  1047

seq1  TTTATTAAAACCTAGTAGTTTGCTTGTATGTACTAGTAATTACAGAAAAT  1099
      |||||||||  |||||||||||||||| ||||||||| |||| |||||||
seq2  TTTATTAAA--CTAGTAGTTTGCTTGTTTGTACTAGT-ATTAAAGAAAAT  1094

seq1  ACTAGTAAAATAAAAGGCATTTAATCATTTATTAACTAG-CAG-TGAAGA  1147
      |||||| ||||||| | |||||| |||||   ||||||| ||| ||||||
seq2  ACTAGT-AAATAAAGGCCATTTATTCATT--ATAACTAGCCAGTTGAAGA  1141

seq1  CTTTTAT  1154
      |||||||
seq2  CTTTTAT  1148


seq1: chr12_34782502_34783632
seq2: B6Ng01-206D03.g_66_1183 (reverse)

seq1  ATCCTAAGCTGAAATTCCCTTGGAAAACGCGTTCTGACAGATTAGGTAGA  50
      ||||| |||||||  | |||||   |||||||   |||||| ||| ||||
seq2  ATCCT-AGCTGAA--TACCTTG---AACGCGT--CGACAGA-TAGTTAGA  41

seq1  CTT-GAGTGAGCCACATTGCTCCTACACAAACTTTCCTTCCATACACTGC  99
      ||| ||||||| |||| |||| ||||||||||||||| ||||||||||||
seq2  CTTGGAGTGAGGCACA-TGCT-CTACACAAACTTTCC-TCCATACACTGC  88

seq1  TTTCTCAGAACCTAGAGAGAAATAATTTTTCATAGCAACAAAACGTTTCG  149
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGA--CTAGAGAGAAATAATTTTTCATAGCAACAAAACGTTTCG  136

seq1  AAAAACCACTTCATGTTAGAACTTATACGCAAGATTGGCACAATTAGTTC  199
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAACCACTTCATGTTAGAACTTATACGCAAGATGGGCACAATTAGTTC  186

seq1  TTTCAAAAAACCTTCCTGAGACTTCAGATAGAAAATGCTGATAAACAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAACCTTCCTGAGACTTCAGATAGAAAATGCTGATAAACAGAA  236

seq1  CTGTGTTGGATAGGGAGAGAAAGCTAGAGGCAGATTACAAATAAACGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGGATAGGGAGAGAAAGCTAGAGGCAGATTACAAATAAACGTAA  286

seq1  AAGCCCCGCTTCTGCAACTGGAGCGCCCTGAGGTCTGTGGGCTTGTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCGCTTCTGCAACTGGAGCGCCCTGAGGTCTGTGGGCTTGTTTTC  336

seq1  AAGTCCCGGGTAATATAGAAAGTATATGTGGTTCAGAATGTTGAGTATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCGGGTAATATAGAAAGTATATGTGGTTCAGAATGTTGAGTATGA  386

seq1  GAATACAAACACATATAAACCCACAATCTGGAGTCTTCAGTTAGATGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAACACATATAAACCCACAATCTGGAGTCTTCAGTTAGATGCCA  436

seq1  TGAAGTTGTACCTACTTGTAAAAGCAACTCGAGAATTAAGGAAATTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGTACCTACTTGTAAAAGCAACTCGAGAATTAAGGAAATTAAAT  486

seq1  TGATCATTTAAGCCTCTCAAACCATTTCCTCGCATGTTTTAGGTGAATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTAAGCCTCTCAAACCATTTCCTCGCATGTTTTAGGTGAATGT  536

seq1  CATTTGAGGGTTTAACCTTCAGTAAATTGCACCAATTTGTTTCATTTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGGGTTTAACCTTCAGTAAATTGCACCAATTTGTTTCATTTTGA  586

seq1  ATATGCTCGCACGGACAGGGCTGACTTCAGAGTGTGTGCACAATGTGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCGCACGGACAGGGCTGACTTCAGAGTGTGTGCACAATGTGGGC  636

seq1  TCTTTATTTTCACCCAGTAGCTCTGCAGAGACGGCAATGGGCAGGACTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTTCACCCAGTAGCTCTGCAGAGACGGCAATGGGCAGGACTCT  686

seq1  CTCCATTGGCAAGGAAGCAAACAGCATTTAGGGCTGTTTTCCTAAAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGCAAGGAAGCAAACAGCATTTAGGGCTGTTTTCCTAAAATTA  736

seq1  AAACCTTGTATGGAGGGACCACAGAATTGAGTTGTGTTCTTTAGAGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGTATGGAGGGACCACAGAATTGAGTTGTGTTCTTTAGAGAATT  786

seq1  TGTTGACTCAATCATTCAGAATTATGGGTACTAAAACCATCTGATTGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCAATCATTCAGAATTATGGGTACTAAAACCATCTGATTGAAG  836

seq1  CATCCACTTGATAAATATTTATGAATATTGGTCATTATTAGTAATCTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTGATAAATATTTATGAATATTGGTCATTATTAGTAATCTAAT  886

seq1  AACTAAGTAATGAAATAATACTAAGTAAATAGTAATTTTTAATAAATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTAATGAAATAATACTAAGTAAATAGTAATTTTTAATAAATTTG  936

seq1  GAGCCAACATGAGAATACACAGTAAAGCTATGTTAAGTAGTTTGACCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACATGAGAATACACAGTAAAGCTATGTTAAGTAGTTTGACCAAG  986

seq1  AAGATGTAGCCGAAATATTAGCTATTGAGACTGATCAGAATTAGTAAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGCCGAAATATTAGCTATTGAGACTGATCAGAATTAGTAAGAG  1036

seq1  ATAAAAACAAAATCTAACCGAACAGACCACTTTTGCATACAAACGTTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAAAATCTAACCGAACAGACCACTTTTGCATACAAACGTTTCA  1086

seq1  GAAAGATAAAACAGATCCAGATGTAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  GAAAGATAAAACAGATCCAGATGTAAGAATTC  1118


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