BAC Information

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BAC

Clone NameB6Ng01-206E22
Chromosome12 (Build37)
Map Location 55,186,327 - 55,334,103
singlet/doubletdoublet
Overlap geneEgln3
Upstream geneAkap6, Npas3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206E22.bB6Ng01-206E22.g
ACCGA025757GA025758
length5401,186
definitionB6Ng01-206E22.b B6Ng01-206E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,186,327 - 55,186,868)(55,332,928 - 55,334,103)
sequence
gaattcaggaggcactgataatatgttatggattccacacacagagaagt
taagcaggtaagttggctgagggaaagggtctccaggcctgacaggcaca
aggacacattggtagagaatgccttcttctactccttggaaaaagtaaca
ctttaactaatttgtccttgctattaaatataaaaatcacagctacctta
accacagatcttaacacacacatgtgtacatgtacacgcacatacacaca
cacccctaactattgatacaaacaatatatttagactaaatataggaggg
gaacttgatcgtcctattgggaagcaatcacccctgaatacaagggatgg
gaaatagacacatttaagagcgctctctctctctctctctctctctctct
ctctctctctctctctctctctgtgtgagatgctgctggtcatgctgacc
tctggggacttaactgtcttcactgtgggatggtgtgagtttggacgagg
tgacctttaggcctgcacaatagaattctctctgacctcc
gaattcaggtggtgggaggtggatataaaattggcataggaactgctggc
aaagactgggatgggagaggaaggccagtaaattacagcaaatcccagag
gcagagaattttaagaaagaatatataaagttgacaatcttaaaacctct
ttccttcacatcaccagagagcccgtaactctcagaaagtcttcatggcc
tttcagagattcacgcgagccattcgaagaccttagccttgcagtaaaac
tgcaccctgaacccctggcatggcttcgaagatgttgaaaatgaaaactt
tttggatttaggcaaaaccctttcacttttaacaaagcctggaattatct
tgctgtgaacttaagaaatttagtttgacacgctaagccgggtaatggct
ttgttctagttaggaattcagccttcccctggagtggtagaacccattga
ttcacagagagaggggtcatagggcaccaccacttacggggaatgaaaat
tactgtggcttaatatttcaagggtagcatgctgcttttatctttcattt
ggagctgggattaaactaactctgagttacagggctgagggactggcgag
atacagaaacagattttgatataagaaaagggagactgtgaaacaatggg
agactagcctcatggagccacatgtcacccgaggcctctgcctgctcaca
tctaagtaagactgactctcccacatgcccgtgtttctatcaagtaacca
tccagagctgtctctttgtggttaatactggaaccaggtgtctggtacat
cacatttattggtcatccttggcatataaattcttttctttttatactga
aaatattttcttcataaacaatgtattctgatcacagttttcccctccct
catctccttcaaggtcctccccacttctccacctcatccaactctatgcc
ttttctttctctcttctttagaaaaacaaacaggcatgttaaaacaaaac
aaaaacaaaacaatccagaatttttttttagacaaaagaaaaagaaaaac
atattacatgcagaaccccccacacattacacacatacacataccataca
cagctattaaatacccaaaattgatcggccgtgttggtgcatgcctttaa
tcttagcactcagagctaaaggcaggtgatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55186327_55186868
seq2: B6Ng01-206E22.b_46_585

seq1  GAATTCAGGAGGCACTGATAATATGTTATGGATTCCACACACAGAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGCACTGATAATATGTTATGGATTCCACACACAGAGAAGT  50

seq1  TAAGCAGGTAAGTTGGCTGAGGGAAAGGGTCTCCAGGCCTGACAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGTAAGTTGGCTGAGGGAAAGGGTCTCCAGGCCTGACAGGCACA  100

seq1  AGGACACATTGGTAGAGAATGCCTTCTTCTACTCCTTGGAAAAAGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACATTGGTAGAGAATGCCTTCTTCTACTCCTTGGAAAAAGTAACA  150

seq1  CTTTAACTAATTTGTCCTTGCTATTAAATATAAAAATCACAGCTACCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTAATTTGTCCTTGCTATTAAATATAAAAATCACAGCTACCTTA  200

seq1  ACCACAGATCTTAACACACACATGTGTACATGTACACGCACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGATCTTAACACACACATGTGTACATGTACACGCACATACACACA  250

seq1  CACCCCTAACTATTGATACAAACAATATATTTAGACTAAATATAGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAACTATTGATACAAACAATATATTTAGACTAAATATAGGAGGG  300

seq1  GAACTTGATCGTCCTATTGGGAAGCAATCACCCCTGAATACAAGGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGATCGTCCTATTGGGAAGCAATCACCCCTGAATACAAGGGATGG  350

seq1  GAAATAGACACATTTAAGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGACACATTTAAGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGTGACCTGCTGCAGGTCATCCTGACC  450
      |||||||||||||||||||||| |||||  |||||| |||||| ||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTGTGTGAGATGCTGCTGGTCATGCTGACC  450

seq1  TCTCTGGAGTTCAACTGTCTTAACTCTGGAATGAGCTGAGTTTGGACAAG  500
      |||  ||| || ||||||||| ||| ||| |||   ||||||||||| ||
seq2  TCTGGGGACTT-AACTGTCTTCACTGTGGGATGGTGTGAGTTTGGACGAG  499

seq1  GTGACCTTCAAGGCCTGCACAGAAGAATTCTCTCTGACCTCC  542
      ||||||||  |||||||||||  |||||||||||||||||||
seq2  GTGACCTT-TAGGCCTGCACAATAGAATTCTCTCTGACCTCC  540

seq1: chr12_55332928_55334103
seq2: B6Ng01-206E22.g_68_1253 (reverse)

seq1  TCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTAGGATTAAAGGCATGC  50
      |||||||| ||||||||| |  || |||||||||| ||||||||||||||
seq2  TCAGAAAT-CACCTGCCTTTAGCT-CTGAGTGCTAAGATTAAAGGCATGC  48

seq1  ACCACCACGCCCGGCTCTATTTTGTGTTATTTATAGGTTGTGTAT-GTAT  99
      |||| |||| || | || |||||| | ||||||   | ||||||| ||||
seq2  ACCAACACGGCC-GATCAATTTTG-GGTATTTAATAGCTGTGTATGGTAT  96

seq1  GTGTATTGTGTGT-ATGTGTGTGTG--TCTGCATGT-ATATGTTTTTCTT  145
      ||||| ||||||| ||||||| | |  ||||||||| |||||||||||||
seq2  GTGTA-TGTGTGTAATGTGTGGGGGGTTCTGCATGTAATATGTTTTTCTT  145

seq1  TTTCTTTTGTCTTAAAAAAAATTCTGGATTGTTT--GTTTTGTTTTGTTT  193
      |||||||||||| |||||||||||||||||||||   |||||||||||||
seq2  TTTCTTTTGTCTAAAAAAAAATTCTGGATTGTTTTGTTTTTGTTTTGTTT  195

seq1  TAACATGCCTGTTTG-TTTTCTAAAG-AGAGAGAA--GAAAGGCATAGAG  239
      ||||||||||||||| |||||||||| ||||||||   ||||||||||||
seq2  TAACATGCCTGTTTGTTTTTCTAAAGAAGAGAGAAAGAAAAGGCATAGAG  245

seq1  TTGGATGA-GTGGAGAAGTGGGGAGGACCTTGAAGGAGATGAGGGAGGGG  288
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGAGGTGGAGAAGTGGGGAGGACCTTGAAGGAGATGAGGGAGGGG  295

seq1  -AAACTGTGATCAGAATACATTG-TTATGAAG-AAATATTTTCAGTATAA  335
       |||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  AAAACTGTGATCAGAATACATTGTTTATGAAGAAAATATTTTCAGTATAA  345

seq1  AAAGAAAAGAATTTATATGCCAAGGATGACCAATAAATGTGATGTACCAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAATTTATATGCCAAGGATGACCAATAAATGTGATGTACCAG  395

seq1  ACACCTGGTTCCAGTATTAACCACAAAGAGACAGCTCTGGATGGTTACTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGTTCCAGTATTAACCACAAAGAGACAGCTCTGGATGGTTACTT  445

seq1  GATAGAAACACGGGCATGTGGGAGAGTCAGTCTTACTTAGATGTGAGCAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAACACGGGCATGTGGGAGAGTCAGTCTTACTTAGATGTGAGCAG  495

seq1  GCAGAGGCCTCGGGTGACATGTGGCTCCATGAGGCTAGTCTCCCATTGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCTCGGGTGACATGTGGCTCCATGAGGCTAGTCTCCCATTGTT  545

seq1  TCACAGTCTCCCTTTTCTTATATCAAAATCTGTTTCTGTATCTCGCCAGT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCTCCCTTTTCTTATATCAAAATCTGTTTCTGTATCTCGCCAGT  595

seq1  CCCTCAGCCCTGTAACTCAGAGTTAGTTTAATCCCAGCTCCAAATGAAAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCCCTGTAACTCAGAGTTAGTTTAATCCCAGCTCCAAATGAAAG  645

seq1  ATAAAAGCAGCATGCTACCCTTGAAATATTAAGCCACAGTAATTTTCATT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAGCATGCTACCCTTGAAATATTAAGCCACAGTAATTTTCATT  695

seq1  CCCCGTAAGTGGTGGTGCCCTATGACCCCTCTCTCTGTGAATCAATGGGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTAAGTGGTGGTGCCCTATGACCCCTCTCTCTGTGAATCAATGGGT  745

seq1  TCTACCACTCCAGGGGAAGGCTGAATTCCTAACTAGAACAAAGCCATTAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACTCCAGGGGAAGGCTGAATTCCTAACTAGAACAAAGCCATTAC  795

seq1  CCGGCTTAGCGTGTCAAACTAAATTTCTTAAGTTCACAGCAAGATAATTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTAGCGTGTCAAACTAAATTTCTTAAGTTCACAGCAAGATAATTC  845

seq1  CAGGCTTTGTTAAAAGTGAAAGGGTTTTGCCTAAATCCAAAAAGTTTTCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTGTTAAAAGTGAAAGGGTTTTGCCTAAATCCAAAAAGTTTTCA  895

seq1  TTTTCAACATCTTCGAAGCCATGCCAGGGGTTCAGGGTGCAGTTTTACTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACATCTTCGAAGCCATGCCAGGGGTTCAGGGTGCAGTTTTACTG  945

seq1  CAAGGCTAAGGTCTTCGAATGGCTCGCGTGAATCTCTGAAAGGCCATGAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAAGGTCTTCGAATGGCTCGCGTGAATCTCTGAAAGGCCATGAA  995

seq1  GACTTTCTGAGAGTTACGGGCTCTCTGGTGATGTGAAGGAAAGAGGTTTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGAGAGTTACGGGCTCTCTGGTGATGTGAAGGAAAGAGGTTTT  1045

seq1  AAGATTGTCAACTTTATATATTCTTTCTTAAAATTCTCTGCCTCTGGGAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTCAACTTTATATATTCTTTCTTAAAATTCTCTGCCTCTGGGAT  1095

seq1  TTGCTGTAATTTACTGGCCTTCCTCTCCCATCCCAGTCTTTGCCAGCAGT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAATTTACTGGCCTTCCTCTCCCATCCCAGTCTTTGCCAGCAGT  1145

seq1  TCCTATGCCAATTTTATATCCACCTCCCACCACCTGAATTC  1176
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCCAATTTTATATCCACCTCCCACCACCTGAATTC  1186