BAC Information

Click to search

BAC

Clone NameB6Ng01-207A10
Chromosome12 (Build37)
Map Location 57,148,015 - 57,314,735
singlet/doubletdoublet
Overlap geneLOC382600, LOC382601
Upstream gene2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
Downstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207A10.bB6Ng01-207A10.g
ACCGA026287GA026288
length592841
definitionB6Ng01-207A10.b B6Ng01-207A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,148,015 - 57,148,612)(57,313,891 - 57,314,735)
sequence
acttcttgcggctacctaggggatctcttttcatttttcatacatgggta
tcttttagttagctttccctgctttaaatagcaacatattcccactgtaa
aacatttaaacaatccagagatgaatgttaagttttaacaataggattag
attcccacaatcctgttcttcaggaatcctgctcaccatttgatgcatat
ttgcttattttatttaacaagcgcttgcacagcaattctatatactaagc
atttccccagacactttgcaattgtacttgatccagcgctcatgacctct
gtgtgaggaggtgtgattactcctctattcacagggagggagtactcaaa
aacattcatcagttgcacacagtcacacatttctactggcaatgttgaga
ttcaaacacaggccagctgacttcagacaccttgctgttaatcacaccaa
gaccaagacactctttcagttatctctttatacagcaaggccaccctctg
ctacatatgcagctgaagccatgggtccctccatgtgtacgccttggttg
gtggtttagtccctgggagctctggagggggggtctggttgg
gaattctgttcatgttgcttccttattttaggtttgttgaaaaattactt
tcttgctttttctagagcatagtttctctccttgtgttggagttttccct
ttattattctttgaagggctggattcatggaaaagatattgtgtaaaatt
ggttttgtcatggaatactttggtttctccatctatggtaattgagagtt
ttgctgggtatagtagcctaggctagcatttgtgttctcttaggatctat
atgacatcatctgcccagaatgttgtaagaggtgggagtgctccccgaac
tgagacaccttgtctggcctcagtggaggaggatgcacctattcacacag
agactcagtgagccagggtaagtggatgccaagggtgggcatctgcctct
cagaggagaaagagatggagagagggacttgttatgaggggcactctagg
ggcagtgattagcatataaatgaataaatcaatcaacaggaaaagaagca
ccatgatgacaactttgttattattgagtaacttgtctaaactaggaaaa
ggcattttctagactaactccaaaaacatttcaattgttaagtgcttttt
tttttacctactttaaaatgaaggagagtgctaaaaaacgtatttactaa
tacaacgttggaatttattagattacatttaatagtactgataatatagt
tataaacattgcataagcatccttataggttttatacatttctctcaact
atcctattcaatggcatatcataattttcactttcagtatcccaaggaac
tattatgataaagtattacataatttaagcatcctaacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57148015_57148612
seq2: B6Ng01-207A10.b_46_643

seq1  GAATTCACTTCTTGCGGCTACCTAGGGGATCTCTTTTCATTTTTCATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTGCGGCTACCTAGGGGATCTCTTTTCATTTTTCATACA  50

seq1  TGGGTATCTTTTAGTTAGCTTTCCCTGCTTTAAATAGCAACATATTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCTTTTAGTTAGCTTTCCCTGCTTTAAATAGCAACATATTCCCA  100

seq1  CTGTAAAACATTTAAACAATCCAGAGATGAATGTTAAGTTTTAACAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAACATTTAAACAATCCAGAGATGAATGTTAAGTTTTAACAATAG  150

seq1  GATTAGATTCCCACAATCCTGTTCTTCAGGAATCCTGCTCACCATTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGATTCCCACAATCCTGTTCTTCAGGAATCCTGCTCACCATTTGAT  200

seq1  GCATATTTGCTTATTTTATTTAACAAGCGCTTGCACAGCAATTCTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGCTTATTTTATTTAACAAGCGCTTGCACAGCAATTCTATATA  250

seq1  CTAAGCATTTCCCCAGACACTTTGCAATTGTACTTGATCCAGCGCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATTTCCCCAGACACTTTGCAATTGTACTTGATCCAGCGCTCATG  300

seq1  ACCTCTGTGTGAGGAGGTGTGATTACTCCTCTATTCACAGGGAGGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGTGAGGAGGTGTGATTACTCCTCTATTCACAGGGAGGGAGTA  350

seq1  CTCAAAAACATTCATCAGTTGCACACAGTCACACATTTCTACTGGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACATTCATCAGTTGCACACAGTCACACATTTCTACTGGCAATG  400

seq1  TTGAGATTCAAACACAGGCCAGCTGACTTCAGACACCTTGCTGTTAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCAAACACAGGCCAGCTGACTTCAGACACCTTGCTGTTAATCA  450

seq1  CACCAAGACCAAGACACTCTTTCAGTTATCTCTTTATACAGCAAGGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGACCAAGACACTCTTTCAGTTATCTCTTTATACAGCAAGGCCAC  500

seq1  CCTCTGCTACATATGCAGCTGAAGCCATGGGTCCCTCCATGTGTACGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTACATATGCAGCTGAAGCCATGGGTCCCTCCATGTGTACGCCT  550

seq1  TGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGAGGGGGGGTCTGGTTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGAGGGGGGGTCTGGTTGG  598

seq1: chr12_57313891_57314735
seq2: B6Ng01-207A10.g_67_907 (reverse)

seq1  CATGTTAAGAATGCTTAAATTTATGTTAATACTTTATCATAATAGTTCCT  50
      |||||| || ||||||||| ||||| ||||||||||||||||||||||||
seq2  CATGTT-AGGATGCTTAAA-TTATG-TAATACTTTATCATAATAGTTCCT  47

seq1  TGGGATACTGGAAAATGAAAAATTATGATATGCCATTGAATA-GATTGTT  99
      ||||||||| |||| || |||||||||||||||||||||||| ||| |||
seq2  TGGGATACT-GAAAGTG-AAAATTATGATATGCCATTGAATAGGATAGTT  95

seq1  GAGAGAAATGTATAAAACCTTATAAGGATGCTTATGCAATGTTTATAACT  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAGAAATGTATAAAACC-TATAAGGATGCTTATGCAATGTTTATAACT  144

seq1  ATATTATCAGTACTATTAAATGTAATCTAATAAATTCCAACGTTGTATTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCAGTACTATTAAATGTAATCTAATAAATTCCAACGTTGTATTA  194

seq1  GTAAATACG-TTTTTAGCACTCTCCTTCATTTTAAAGTAGGTAAAAAAAA  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACGTTTTTTAGCACTCTCCTTCATTTTAAAGTAGGTAAAAAAAA  244

seq1  AAGCACTTAACAATTGAAATGTTTTTGGAGTTAGTCTAGAAAATGCCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTAACAATTGAAATGTTTTTGGAGTTAGTCTAGAAAATGCCTTT  294

seq1  TCCTAGTTTAGACAAGTTACTCAATAATAACAAAGTTGTCATCATGGTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTTAGACAAGTTACTCAATAATAACAAAGTTGTCATCATGGTGC  344

seq1  TTCTTTTCCTGTTGATTGATTTATTCATTTATATGCTAATCACTGCCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTGTTGATTGATTTATTCATTTATATGCTAATCACTGCCCCT  394

seq1  AGAGTGCCCCTCATAACAAGTCCCTCTCTCCATCTCTTTCTCCTCTGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCCCTCATAACAAGTCCCTCTCTCCATCTCTTTCTCCTCTGAGA  444

seq1  GGCAGATGCCCACCCTTGGCATCCACTTACCCTGGCTCACTGAGTCTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGCCCACCCTTGGCATCCACTTACCCTGGCTCACTGAGTCTCTG  494

seq1  TGTGAATAGGTGCATCCTCCTCCACTGAGGCCAGACAAGGTGTCTCAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAGGTGCATCCTCCTCCACTGAGGCCAGACAAGGTGTCTCAGTT  544

seq1  CGGGGAGCACTCCCACCTCTTACAACATTCTGGGCAGATGATGTCATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGCACTCCCACCTCTTACAACATTCTGGGCAGATGATGTCATATA  594

seq1  GATCCTAAGAGAACACAAATGCTAGCCTAGGCTACTATACCCAGCAAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAAGAGAACACAAATGCTAGCCTAGGCTACTATACCCAGCAAAAC  644

seq1  TCTCAATTACCATAGATGGAGAAACCAAAGTATTCCATGACAAAACCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTACCATAGATGGAGAAACCAAAGTATTCCATGACAAAACCAAT  694

seq1  TTTACACAATATCTTTTCCATGAATCCAGCCCTTCAAAGAATAATAAAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATATCTTTTCCATGAATCCAGCCCTTCAAAGAATAATAAAGG  744

seq1  GAAAACTCCAACACAAGGAGAGAAACTATGCTCTAGAAAAAGCAAGAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCAACACAAGGAGAGAAACTATGCTCTAGAAAAAGCAAGAAAG  794

seq1  TAATTTTTCAACAAACCTAAAATAAGGAAGCAACATGAACAGAATTC  845
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCAACAAACCTAAAATAAGGAAGCAACATGAACAGAATTC  841